Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000768-TA|BGIBMGA000768-PA|IPR007000|Laminin A
(978 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 36 0.021
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 32 0.34
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 30 1.4
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 29 3.1
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 29 4.2
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 29 4.2
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 29 4.2
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 28 7.3
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 28 7.3
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 28 7.3
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 9.6
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 36.3 bits (80), Expect = 0.021
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 645 LWINMLGDLDDLAFALSMPRETPEGLMFGEHCSGLVKLLPDLSDLYTAQVTWNSYQSMLR 704
LW ++D+ L+ + P +M G + L+K+ + WN Y +
Sbjct: 247 LWQEAFRSIEDIHSLLTFSKRAPAAVMLGNYYRKLIKIFLVCDNYLLHAAAWNRYFTFTN 306
Query: 705 IQKMYVMNYMTSPGSGV-LIPGRKMSLSSYPA 735
+QK N++ + +I K+S S A
Sbjct: 307 VQKPATANFVILSALSIPIIDANKLSGPSIEA 338
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 167 HHNLPDRCINNVVAGLLLHDQDPASARSIVMYLSYVNCTEEVYPTRANLLKGCFSVLAEN 226
H + D IN V+ GL HD D + ++ + +E + NLLK + L +
Sbjct: 512 HSDYLDSLINTVIHGLANHDDDVRAVSALTLLPIADKLVQEKLSSCKNLLKVLWDCLDDV 571
Query: 227 MDDL 230
DDL
Sbjct: 572 KDDL 575
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 816 KFTPAVGKMKGSVRPGLLWVVEQLPGYTEAADITEELKQTSYFPSYNIAYFPSVFNLSGG 875
K P GK+ + R + + +++LP ++ A E LK +++ VF SG
Sbjct: 956 KVMPGTGKVGKAARESIAYFMKKLPKSSKEAAYLENLKDGEIVAPISVSRLKMVFGSSGN 1015
Query: 876 NER 878
++
Sbjct: 1016 TKK 1018
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 686 LSDLYTAQVTWNSYQSMLRIQKMYVMNYMTSPGSGVLIPGRKMSLSSYPAFVQSTDDFYV 745
LSDL + VT + + +Q N +T P + +P ++ PA V DD +
Sbjct: 179 LSDLPSTNVTPKKTTTQIDVQT----NIVTPPITVTAVPDSPNPPAATPATVADNDDLSI 234
Query: 746 MSSGLVAAETTIGNSNRTLY 765
+SS + TT NR Y
Sbjct: 235 VSSD--SGNTTAPRKNRHRY 252
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 538 VGINVSQWLNSPGHERTPYLMRE 560
+ +NV + LNS GH+ Y+MRE
Sbjct: 732 IRLNVYKHLNSDGHQPIRYMMRE 754
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 859 PSYNIAYFPSVFNLSGGNERVNTYGDWFGYHTNPRAKIFKQKQSEIHNLRDMYRTMRYND 918
P +A +F S N+ N Y WF H N R ++ + + H D ++++ N
Sbjct: 50 PKLQVAVRECLFLFSFQND--NEYLVWFKKHLNERLQLCPKCIVKYHQSLDDFKSLCLNI 107
Query: 919 YRHDP 923
+ DP
Sbjct: 108 FHFDP 112
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 836 VEQLPGYTEAADITEELKQTSYFPSYNIAYFPSVFNLSGGNERVNTYGDWFGYHTNPRAK 895
+ ++ + + + E+ + ++F N+++ P + ++ +N Y DW Y+ NP+
Sbjct: 7 IARIQAFRKQVPLVEKNENITFF---NLSFQPPMNSIVANT--INEYVDWGLYNPNPK-P 60
Query: 896 IFKQKQSEIHNLRDMYRTMRYND 918
+++QK E L Y +D
Sbjct: 61 LWQQKAEETRELVAKYLNASSSD 83
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 689 LYTAQVTWNSYQSMLRIQKMYVMNYMTSPGSGVLIPGRKMSLSSYP 734
LY + W YQ +L +Q++ M + G G P + L P
Sbjct: 155 LYMLKQQWEDYQKLLLLQRLEQMKVIKDSGIGSFSPSVDVQLGFNP 200
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 793 WVRLFRDHNSGTYNNQWYVVDYNKFTPAVGKMKGSVRPGLLWVVEQLPGYTEAADITEEL 852
W R + N G ++WY + P+ ++ G RP L E L E + EL
Sbjct: 44 WRRFVKRWNDGKMKSKWYSLGKRISQPSYARLVGPSRPTL----ENLQDRRELQEQLNEL 99
Query: 853 KQTS 856
++ S
Sbjct: 100 RKLS 103
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 723 IPGRKMSLSSYPAFVQSTDDFYVMSSGLVAAETTIGNSNRTLYEHV 768
I G+K S+ P V F M + +A+ +GN +RT +HV
Sbjct: 654 IKGKKGSMHLQPRDVNRKVPFKSMHTKSKSADPVVGNEDRTQCDHV 699
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 272 GFEKALLIARIFSRIAHTHLGLVQYLCELAASSPTTLSEARTNILFGFINCLSNMN 327
G KA + I R+AH G + + +PT E ++ + G + LSN++
Sbjct: 343 GSHKAKVNLEILQRLAHRRDG---HYVVVTGITPTPFGEGKSTLTAGLVQALSNLD 395
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 9.6
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 206 EEVYPTRANLLKGCFSVLAENMDDLQYNEVVKVASRVKSRILDKH-----PEFYHEQMLD 260
E +Y + NL+ C VL ++DD + + ++ +R+ ++ D+ E E++++
Sbjct: 467 ENMYREKRNLVLDCLEVLQISVDDT--SNIPEIIARLSEKLKDREESEAVTEDLIEEVVN 524
Query: 261 AMGDYVIKHKVGFEKALLIARIFSRIAHTHLGLVQYL 297
+ D I HK EK RI +I + ++YL
Sbjct: 525 RLRDKAI-HKKAEEKRADERRIRRKIDNLR-SAIKYL 559
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,549,417
Number of Sequences: 5004
Number of extensions: 197951
Number of successful extensions: 444
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 14
length of query: 978
length of database: 2,362,478
effective HSP length: 80
effective length of query: 898
effective length of database: 1,962,158
effective search space: 1762017884
effective search space used: 1762017884
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -