GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000768-TA|BGIBMGA000768-PA|IPR007000|Laminin A
         (978 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32981| Best HMM Match : Laminin_A (HMM E-Value=6.6e-25)            119   1e-26
SB_1927| Best HMM Match : Laminin_A (HMM E-Value=0.00021)             113   9e-25
SB_43319| Best HMM Match : Laminin_A (HMM E-Value=0.0086)             109   1e-23
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   31   6.0  

>SB_32981| Best HMM Match : Laminin_A (HMM E-Value=6.6e-25)
          Length = 432

 Score =  119 bits (286), Expect = 1e-26
 Identities = 72/203 (35%), Positives = 108/203 (53%), Gaps = 28/203 (13%)

Query: 748 SGLVAAETTIGNSNRTLYEHVRPEGQILEFVRAMVANRLATDGARWVRLFRDHNS----- 802
           S LV  +TT    N++LYE V PE  +  + R  +AN +A+ G +W  +   +NS     
Sbjct: 187 SKLVMLQTTNNVFNKSLYEQVVPES-LFSWQRVRLANLVASSGRQWADIVGQYNSELCVI 245

Query: 803 ----------------GTYNNQWYVVDYNKFTPAVGKMKGSVRPGLLWVVEQLPGYTEAA 846
                           GTYNNQ+ V+D         ++  +++   LWVVEQ+P    + 
Sbjct: 246 FVLEIEDLQRIVCMCLGTYNNQYMVLDLKLI-----QLNNTIQDNALWVVEQIPTLVASG 300

Query: 847 DITEELKQTSYFPSYNIAYFPSVFNLSGGNERVNTYGDWFGYHTNPRAKIFKQKQSEIHN 906
           D T  L+   Y+PSYN+ ++  V+NLSG  + V  +G  F +   PRAKIF++ QS +H+
Sbjct: 301 DQTAILR-AGYWPSYNVPFYELVYNLSGYPDFVARHGVQFSHELAPRAKIFRRDQSMVHD 359

Query: 907 LRDMYRTMRYNDYRHDPLSRCAP 929
           L  M   MRYND++HDP S+  P
Sbjct: 360 LDSMKHIMRYNDFQHDPYSQGNP 382


>SB_1927| Best HMM Match : Laminin_A (HMM E-Value=0.00021)
          Length = 188

 Score =  113 bits (271), Expect = 9e-25
 Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 5/113 (4%)

Query: 803 GTYNNQWYVVDYNKFTPAVGKMKGSVRPGLLWVVEQLPGYTEAADITEELKQTSYFPSYN 862
           GT    W V+DY  FTP        ++PG L V+EQ+PG TE AD++  L++  Y+ SYN
Sbjct: 23  GTLLEWWMVLDYKLFTPGQ-----PIQPGTLSVLEQIPGMTETADMSVYLQENGYWASYN 77

Query: 863 IAYFPSVFNLSGGNERVNTYGDWFGYHTNPRAKIFKQKQSEIHNLRDMYRTMR 915
           + YFP+++N+SG       YG WF YH NPRA+IFK+ QS++ +L  M + MR
Sbjct: 78  LPYFPTIYNMSGQEASREAYGSWFDYHLNPRAQIFKRDQSKVVDLETMMKLMR 130



 Score = 36.7 bits (81), Expect = 0.091
 Identities = 14/28 (50%), Positives = 23/28 (82%)

Query: 750 LVAAETTIGNSNRTLYEHVRPEGQILEF 777
           +V+ ETTIGN+N  L+++V P+G +LE+
Sbjct: 1   MVSIETTIGNTNEDLWKYVTPQGTLLEW 28


>SB_43319| Best HMM Match : Laminin_A (HMM E-Value=0.0086)
          Length = 375

 Score =  109 bits (262), Expect = 1e-23
 Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 8/127 (6%)

Query: 726 RKMSLSSYPAFVQSTDDFYVMSSGLVAAETTIGNSNRTLYEHVRPEGQILEFVRAMVANR 785
           RKMS SSYP  ++S DDFY+M S L+  +TT G  N+TLYEHV PE  +L + R  +AN 
Sbjct: 29  RKMSFSSYPGCLESLDDFYIMDSKLMMLQTTNGILNKTLYEHVTPE-SLLSWHRVRLANV 87

Query: 786 LATDGARWVRLFRDHNSGTYNNQWYVVDYNKFTPAVGKMKGSVRPGLLWVVEQLPGY--T 843
           +A+ G +W  +   +NSGTYNNQ+ V+D  +      ++  ++    LWVVEQ+P +   
Sbjct: 88  MASGGRQWADIVGQYNSGTYNNQYMVLDLKRI-----QLNKTIEDNALWVVEQIPSFYRR 142

Query: 844 EAADITE 850
           E  D+ E
Sbjct: 143 EIVDVME 149


>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 857  YFPSYNIAYFPSVFNLSGGNERVNTYGDWFGYH--TNP 892
            +FPS +    PSVF   G   R N  G  FGYH  +NP
Sbjct: 1985 FFPSGDKIDVPSVFLKGGSFPRANRNGKIFGYHVISNP 2022


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,460,253
Number of Sequences: 59808
Number of extensions: 1344369
Number of successful extensions: 2531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2515
Number of HSP's gapped (non-prelim): 10
length of query: 978
length of database: 16,821,457
effective HSP length: 89
effective length of query: 889
effective length of database: 11,498,545
effective search space: 10222206505
effective search space used: 10222206505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)