GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000768-TA|BGIBMGA000768-PA|IPR007000|Laminin A
         (978 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83104-4|CAB05478.2|  582|Caenorhabditis elegans Hypothetical pr...   278   2e-74
AL032626-2|CAA21539.1|  571|Caenorhabditis elegans Hypothetical ...   264   2e-70
AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical ...   251   2e-66
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    35   0.25 
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    35   0.25 
AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ...    32   1.7  
U97403-5|AAO21397.1|  268|Caenorhabditis elegans Hypothetical pr...    31   4.0  
U97403-4|AAB52474.2|  445|Caenorhabditis elegans Hypothetical pr...    31   4.0  

>Z83104-4|CAB05478.2|  582|Caenorhabditis elegans Hypothetical
           protein F09B12.3 protein.
          Length = 582

 Score =  278 bits (681), Expect = 2e-74
 Identities = 146/377 (38%), Positives = 213/377 (56%), Gaps = 12/377 (3%)

Query: 576 YCFNKTDVCALIEDYLDKNEDYIASMVQEHY-EDPYWYQIKLYYIQLEGLAAGYNDATKS 634
           YC N T  C+ + D+L +N+ +I S ++    +D YW  +   Y Q+ GL   Y      
Sbjct: 138 YCKNFTGYCSRLSDFLTENQKWIQSSLETVAPDDLYWGAVNRTYHQVSGLIDAYEGREFK 197

Query: 635 MYEWLTVRDILWINMLGDLDDLAFALSMPRETPEGLMFGEHCSGLVKLLPDLSDLYTAQV 694
                 +  IL++N+ GD  DL   L+  R+ P     G  CSGL+K+ P  +DL+ +QV
Sbjct: 198 PRITYELHPILYLNLNGDFYDLEKKLNKTRD-PAFEQTGGKCSGLIKVAPGNADLFISQV 256

Query: 695 TWNSYQSMLRIQKMYVMNYMTSPGSGVLIPGRKMSLSSYPAFVQSTDDFYVMSSGLVAAE 754
           T + +Q+MLR+ K+Y   Y          PG   S SSYP  + S+DDF + +SGL   E
Sbjct: 257 TMSGFQNMLRVIKLYKFGYDRQ-----FYPGYASSFSSYPGLLYSSDDFALQTSGLAVIE 311

Query: 755 TTIGNSNRTLYEHVRPEGQILEFVRAMVANRLATDGARWVRLFRDHNSGTYNNQWYVVDY 814
           TTI   N +L+E+ +P GQ+  ++RA+V+N+LA D   W +L+  +NSGTYNNQW V+DY
Sbjct: 312 TTISVFNTSLFENTKPVGQLPTWIRAIVSNQLARDAREWCKLYSLYNSGTYNNQWAVLDY 371

Query: 815 NKFTPAVGKMKGSVRPGLLWVVEQLPGYTEAADITEELKQTSYFPSYNIAYFPSVFNLSG 874
            KF P     K     GL +V+EQ+PG    +D+T  +++ SYFPSYNI +F  +  +SG
Sbjct: 372 KKFKPNQPLPKN----GLFYVLEQMPGKIVYSDLTWFVEKYSYFPSYNIPFFKEITEISG 427

Query: 875 GNERVNTYGDWFGYHTNPRAKIFKQKQSEIHNLRDMYRTMRYNDYRHDPLSRCAPCXXXX 934
              +    GDWF +  +PRAKIF++    +H+L  +   MRYNDY++D  S+C  C    
Sbjct: 428 FIGQAAKMGDWFKWGASPRAKIFERDHGNVHDLDSLTALMRYNDYKNDEFSKC-KCNPPY 486

Query: 935 XXXXXXXXRNDLNPANG 951
                   R DLNPANG
Sbjct: 487 SAEAGISARGDLNPANG 503


>AL032626-2|CAA21539.1|  571|Caenorhabditis elegans Hypothetical
           protein Y37D8A.2 protein.
          Length = 571

 Score =  264 bits (647), Expect = 2e-70
 Identities = 147/381 (38%), Positives = 210/381 (55%), Gaps = 21/381 (5%)

Query: 576 YCFNKTDVCALIEDYLDKNEDYIASMVQEHYEDPYWYQIKLYYIQLEGLAAGYND--ATK 633
           YC      C  + +++  N  ++   ++E+ ED YW Q+ L   QL GL  GY +    +
Sbjct: 110 YCDGAKHFCDELGEFMVDNLKWMEQEIRENPEDEYWQQVNLTVNQLFGLIHGYENQLGAE 169

Query: 634 SMYEWLTVRDILWINMLGDLDDLAFALSMPRETPEGLMFGE-HCSGLVKLLPDLSDLYTA 692
             ++ + V  I  I + GDL+DLA     P E P+ +  G  HCS LVKLLP   D+  +
Sbjct: 170 IDFKQIAVHPIFMIQIAGDLEDLAMKFKKP-ENPKKVFSGPGHCSALVKLLPKNEDILFS 228

Query: 693 QVTWNSYQSMLRIQKMYVMNYMTSPGSGVLIPGRKMSLSSYPAFVQSTDDFYVMSSGLVA 752
            VTW+SY +MLRI K Y  ++ T        PG+  S SSYPA + STDDF + S+ L  
Sbjct: 229 HVTWSSYGTMLRINKKY--SFKTGD------PGQIYSFSSYPASITSTDDFVLTSAKLAI 280

Query: 753 AETTIGNSNRTLYEHVRPEGQILEFVRAMVANRLATDGARWVRLFRDHNSGTYNNQWYVV 812
            ETTIGN N    + + P   +L ++RA +A+R A+ G +W   F  HNSGTYNN+W VV
Sbjct: 281 LETTIGNYNEKSLDLITPN-TVLTWIRAEIAHRTASSGLQWAEAFGRHNSGTYNNEWVVV 339

Query: 813 DYNKFTPAVGKMKGSVRP--GLLWVVEQLPGYTEAADITEELKQTSYFPSYNIAYFPSVF 870
           DY +F    GK    V+P  G++ VVEQ+PG+   +D T  L + +Y+P YN  Y+  + 
Sbjct: 340 DYKQFHR--GK---EVQPETGIIHVVEQMPGHIVHSDKTAHLFRETYWPGYNQPYYKQII 394

Query: 871 NLSGGNERVNTYGDWFGYHTNPRAKIFKQKQSEIHNLRDMYRTMRYNDYRHDPLSRCAPC 930
             S  ++ V  +GDW+ Y   PRA IFK+  + + ++  M   MR N+Y  DPLS+C  C
Sbjct: 395 RFSDTDKMVEKFGDWYSYDKTPRALIFKRDHNTVTDMSSMIALMRSNNYTKDPLSKC-DC 453

Query: 931 XXXXXXXXXXXXRNDLNPANG 951
                       R+DLNP NG
Sbjct: 454 NPPYSAENAIACRSDLNPLNG 474


>AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.8 protein.
          Length = 581

 Score =  251 bits (615), Expect = 2e-66
 Identities = 139/383 (36%), Positives = 209/383 (54%), Gaps = 20/383 (5%)

Query: 575 TYCFNKTDVCALIEDYLDKNEDYIASMVQEHYE-DPYWYQIKLYYIQLEGLAAGYNDATK 633
           T C N T  C  +  YL +N D++ S VQ +   DP+W Q+ L + QL G+   Y+    
Sbjct: 128 TMCNNHTLFCKRLYIYLQQNLDWMRSQVQANPPTDPFWRQVNLTFAQLTGIYDAYSKRNL 187

Query: 634 SMYEWLTVRDILWINMLGDLDDLAFALSM---PRETPEGLMFGEHCSGLVKLLPDLSDLY 690
           +      +  I  + + GD+ DL   L+    P E PEG      CSG VKL P   D++
Sbjct: 188 TPEIGFDLHPIYMMQLAGDMFDLNKLLNKTADPMEYPEG----GRCSGFVKLAPGNKDMF 243

Query: 691 TAQVTWNSYQSMLRIQKMYVMNYMTSPGSGVLIPGRKMSLSSYPAFVQSTDDFYVMSSGL 750
            A V+ +S   M R+ K+Y   Y  +      +PG  ++ S YP  + STDD+ + S+GL
Sbjct: 244 MAHVSMSSLSWMQRVLKIYKFGYDVNE-----VPGHIVTFSGYPGVLISTDDYTITSAGL 298

Query: 751 VAAETTIGNSNRTLY--EHVRPEGQILEFVRAMVANRLATDGARWVRLFRDHNSGTYNNQ 808
            + ETTI   N+TLY  + ++PEGQ+  ++R+M++N L+  G +WV +F  +NSGTYNNQ
Sbjct: 299 TSIETTIAIFNQTLYTDKFMKPEGQVHCWIRSMISNLLSRTGKQWVDMFGRYNSGTYNNQ 358

Query: 809 WYVVDYNKFTPAVGKMKGSVRPGLLWVVEQLPGYTEAADITEELKQTSYFPSYNIAYFPS 868
           W V+D+ +FTP     K      +LW+ EQ PGY E  D+T  LK+ +YF SYNI + P 
Sbjct: 359 WTVLDWKQFTPE----KELPDKDVLWISEQTPGYYETRDMTWYLKKYTYFASYNIPFLPK 414

Query: 869 VFNLSGGNERVNTYGDWFGYHTNPRAKIFKQKQSEIHNLRDMYRTMRYNDYRHDPLSRCA 928
           V  +SG + +   +  WF +  +PRA+IF +  S++ ++  + + MRYNDY H+  +RC 
Sbjct: 415 VSEISGFDNKARQFA-WFDWGGSPRARIFDRDHSKVTDIDSLTKLMRYNDYTHEEFARCK 473

Query: 929 PCXXXXXXXXXXXXRNDLNPANG 951
                         R DLN   G
Sbjct: 474 CTPNPYTGEGGISARGDLNTPGG 496


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 572 LSATYCFNKTDVCALIEDYLDKNEDYIASMVQEHYEDPYWYQIKLYYIQLEGLAAGYNDA 631
           +S+  C +K D+ A   D    + D   + V+ HY+DP+W     Y++    L       
Sbjct: 513 MSSAICGSKLDIHAGGFDLKFPHHDNEIAQVEAHYDDPHWVN---YFLHCGTLRIQGMKM 569

Query: 632 TKSMYEWLTVRDIL 645
           +KS+  ++T+R  L
Sbjct: 570 SKSLKNFITIRKAL 583


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 572 LSATYCFNKTDVCALIEDYLDKNEDYIASMVQEHYEDPYWYQIKLYYIQLEGLAAGYNDA 631
           +S+  C +K D+ A   D    + D   + V+ HY+DP+W     Y++    L       
Sbjct: 512 MSSAICGSKLDIHAGGFDLKFPHHDNEIAQVEAHYDDPHWVN---YFLHCGTLRIQGMKM 568

Query: 632 TKSMYEWLTVRDIL 645
           +KS+  ++T+R  L
Sbjct: 569 SKSLKNFITIRKAL 582


>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
           protein F40E12.2 protein.
          Length = 1251

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 334 QWQEIQRQITTNAVLDSNNSILPWPKVCLELASLGIYKDKVIKHVFS--EEFLNDYFSRD 391
           QW+++++ +   A+LD  N +    K CL +A   ++K+ +   + S  +++ +DY+  D
Sbjct: 818 QWEKVEKMVKAGALLDVCNGL--DGKTCLHVAIENLHKETIELMIQSGADKYAHDYYGND 875


>U97403-5|AAO21397.1|  268|Caenorhabditis elegans Hypothetical
           protein T10E9.7b protein.
          Length = 268

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 877 ERVNTYGDWFGYHTNPRAKIFKQKQSEIHNLRDMYRTMRYNDYRHDP 923
           E  + YG WF  H + R +I      E H  R  Y    YN+ R+DP
Sbjct: 166 EVYDMYGVWFNNHPDLR-RILTDYGFEGHPFRKDYPLSGYNEVRYDP 211


>U97403-4|AAB52474.2|  445|Caenorhabditis elegans Hypothetical
           protein T10E9.7a protein.
          Length = 445

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 877 ERVNTYGDWFGYHTNPRAKIFKQKQSEIHNLRDMYRTMRYNDYRHDP 923
           E  + YG WF  H + R +I      E H  R  Y    YN+ R+DP
Sbjct: 343 EVYDMYGVWFNNHPDLR-RILTDYGFEGHPFRKDYPLSGYNEVRYDP 388


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,233,314
Number of Sequences: 27539
Number of extensions: 1043587
Number of successful extensions: 2269
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2248
Number of HSP's gapped (non-prelim): 10
length of query: 978
length of database: 12,573,161
effective HSP length: 88
effective length of query: 890
effective length of database: 10,149,729
effective search space: 9033258810
effective search space used: 9033258810
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)