GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000768-TA|BGIBMGA000768-PA|IPR007000|Laminin A
         (978 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   4.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   6.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   6.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   6.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   9.1  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 222 VLAENMDDLQYNEVVKVASRVKSRILDKHPEFY 254
           ++A+N D LQ+   +K+  ++ S I ++    Y
Sbjct: 340 IVAKNNDTLQFISGIKIIKQISSNIYERQNNEY 372


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 6.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 669 GLMFGEHCSGLVKLLPDLSDLYTAQVTWNSYQSMLRI 705
           G++F   C+G V+L       +  ++ W S +  L I
Sbjct: 780 GILFWYLCAGHVRLPYTFEQFHNKELLWTSVKKALMI 816


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 6.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 669 GLMFGEHCSGLVKLLPDLSDLYTAQVTWNSYQSMLRI 705
           G++F   C+G V+L       +  ++ W S +  L I
Sbjct: 818 GILFWYLCAGHVRLPYTFEQFHNKELLWTSVKKALMI 854


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 6.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 3/26 (11%)

Query: 415 EYELSTDVMKETIAMY---PVSALTD 437
           EY +ST  MKE I  +   P+S L D
Sbjct: 407 EYRMSTGEMKEAITQWQGNPISPLND 432


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 800 HNSGTYNNQWYVVDYNKF 817
           HN+  YNN  Y  +YN +
Sbjct: 324 HNNNNYNNNNYNNNYNNY 341


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 285,542
Number of Sequences: 429
Number of extensions: 12428
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 5
length of query: 978
length of database: 140,377
effective HSP length: 64
effective length of query: 914
effective length of database: 112,921
effective search space: 103209794
effective search space used: 103209794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)