GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000768-TA|BGIBMGA000768-PA|IPR007000|Laminin A
         (978 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase fa...    33   1.2  
At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase fa...    33   1.2  
At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR ...    31   2.8  
At5g51670.1 68418.m06406 expressed protein contains Pfam domain ...    31   3.7  
At4g17710.1 68417.m02645 homeobox-leucine zipper family protein ...    30   6.5  
At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein ...    30   8.6  

>At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase
           family protein / ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 566

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 710 VMNYMTSPGSGVLIPGRKM---SLSSYPAFVQSTDDFYVMSSGLVAAETTIGNSNRTLYE 766
           +M Y+T PGS  +IP R +   S+ S    +QS   F V +  LV     +  SN  + +
Sbjct: 35  IMIYLTLPGS--VIPMRVLESDSIESVKLRIQSYRGFVVRNQKLVFGGRELARSNSNMRD 92

Query: 767 HVRPEGQILEFV 778
           +   EG IL  V
Sbjct: 93  YGVSEGNILHLV 104


>At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase
           family protein / ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 566

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 710 VMNYMTSPGSGVLIPGRKM---SLSSYPAFVQSTDDFYVMSSGLVAAETTIGNSNRTLYE 766
           +M Y+T PGS  +IP R +   S+ S    +QS   F V +  LV     +  SN  + +
Sbjct: 35  IMIYLTLPGS--VIPMRVLESDSIESVKLRIQSYRGFVVRNQKLVFGGRELARSNSNMRD 92

Query: 767 HVRPEGQILEFV 778
           +   EG IL  V
Sbjct: 93  YGVSEGNILHLV 104


>At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 857

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 676 CSGLVKLLPDLSDLYTAQVTWNSYQSMLRIQKMYVMNYMTSPGSGVLIPGRKMSLS 731
           C GL   +  L  L   + TWN +Q +    K YV N  +S GS  ++    + LS
Sbjct: 362 CGGLPLAITVLGGLLATKSTWNEWQRVCENIKSYVSNGGSSNGSKNMLVADVLCLS 417


>At5g51670.1 68418.m06406 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 474

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 20/97 (20%), Positives = 47/97 (48%)

Query: 279 IARIFSRIAHTHLGLVQYLCELAASSPTTLSEARTNILFGFINCLSNMNYIPPPPQWQEI 338
           +  I +R   T L  ++ +   AA++   +    +++     +  S+MN + P P  +E 
Sbjct: 232 VVLILARSVFTALARLKSVFSSAAATGYMVPTVVSSLPRSLSSSSSSMNLVHPSPNDEER 291

Query: 339 QRQITTNAVLDSNNSILPWPKVCLELASLGIYKDKVI 375
            +  T++A L+ ++ +L  P+  L  A + ++   +I
Sbjct: 292 DKTTTSSAFLEESSRLLKPPETTLGGAGVALHYANLI 328


>At4g17710.1 68417.m02645 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL4 protein (GI:8920425) [Zea
           mays]; contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 709

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 734 PAFVQSTDDFYVMSSGLVAAETTIGNSNRTLYEHVRPEGQIL--EFVRAMVANRLATDGA 791
           PA   +TD +    SG +      G S  T  EHV  E + +  E VR  V + +A    
Sbjct: 392 PASATTTDQYRRKPSGCIIQAMRNGYSQVTWVEHVEVEEKHVQDEVVREFVESGVAFGAE 451

Query: 792 RWVRLFR 798
           RW+ + +
Sbjct: 452 RWLSVLK 458


>At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 361

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 850 EELKQTSYFPSYNIAYFPSVFNLSGGNERVNTYGDWFGYHTNPRAKIFKQKQ 901
           EE K+ S+   Y    FPS   L GG+ R++T  +  GY+ N + ++  Q++
Sbjct: 2   EEGKENSFLCKYCYKTFPSGKAL-GGHIRIHTNENSVGYNGNKKKRLVDQRK 52


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,937,871
Number of Sequences: 28952
Number of extensions: 978741
Number of successful extensions: 2079
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2077
Number of HSP's gapped (non-prelim): 6
length of query: 978
length of database: 12,070,560
effective HSP length: 88
effective length of query: 890
effective length of database: 9,522,784
effective search space: 8475277760
effective search space used: 8475277760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)