Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000767-TA|BGIBMGA000767-PA|IPR003191|Guanylate-binding
protein
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    31   0.56 
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    29   1.3  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    29   2.3  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    28   4.0  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    27   5.3  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    27   5.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   7.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   9.2  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   9.2  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   9.2  

>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 164 IYNLSQNIQEDDLQHLQLFTEYGRLALEDGGRTPFQRLQ--FLVRDWSFPYEAPYGADGG 221
           + NL  NI  +  Q  +LF+++GR+        P   +   +    +S P+EA    +  
Sbjct: 423 VKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTL 482

Query: 222 MQILSRRLKVSDKQHPELQSLRKHITACFSELACFLMPHPGLKV--ATNPQ 270
             +L  + ++      + +  +K ++A FS+    ++P P L +  AT PQ
Sbjct: 483 NGVLFGKKRLFVNYAEKREDRKKRLSAIFSQSYPPVVPSPSLTIPMATEPQ 533


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 443 IFKAARTPSXXXXXXXXXXXXSGVFGLLG--LYPLANVANFAMGLALLTLVLWAYIRYSG 500
           IF  A+                G F  LG  L  +       + LALL ++ W Y RYS 
Sbjct: 214 IFSCAQQAVTSIVLDTENLRNRGNFTWLGETLVSILFACQLVLDLALLLILSWGYTRYST 273

Query: 501 EMRE 504
            MR+
Sbjct: 274 NMRD 277


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 125 DGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLSQNIQEDDL 176
           D  K + IL D +GAF ++  + D +T+    +  +SV++YN +  +++ D+
Sbjct: 317 DAIKASPILAD-EGAFYAKHLILDLSTLSPAVSGPNSVKVYNSAATLEKKDI 367


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 165 YNLSQNIQEDD----LQHLQLFTEYGRLALEDGGRTP-FQRLQFLVRDWSFPYEAPYGAD 219
           ++L  N+ ED     L  L+ + +   L L  G +   F+ + FL  +W+F  E  Y  +
Sbjct: 530 WSLPTNVDEDYDNVLLDSLKFYFKLLTLKLSSGNKNLYFKEIDFLENEWAFLNEHIYWIN 589

Query: 220 GG 221
           GG
Sbjct: 590 GG 591


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 318 FKSYMNIYKGNELPEPKSMLVATAEANNLTAVAEAKEVYTRLMEEVCGGGRPYLHADLLL 377
           F+S  NI KG   PE  + +V T  AN+L    +   + T L     GGG   +   +  
Sbjct: 248 FRSVWNIIKGWIKPEIAAKIVFTQSANDLEKYIDYSVIPTSL-----GGGNKKIFQYIEP 302

Query: 378 TEHQ 381
            EH+
Sbjct: 303 VEHE 306


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/42 (26%), Positives = 25/42 (59%)

Query: 332 EPKSMLVATAEANNLTAVAEAKEVYTRLMEEVCGGGRPYLHA 373
           +PK+ L+ T E N+ +++++ K+  T +  +  G  + +L A
Sbjct: 191 QPKNALMYTPETNHSSSLSQIKKQSTEIQADATGLSQSFLEA 232


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 297  ENLVPKLINGQKVKAKDLVQYFKSYMNIYKGNELPEPKSMLVATAEANNLTAVAEAK--E 354
            + L  + I    +  K L+Q+F S ++++ G EL    S ++A          AE K  +
Sbjct: 2347 KTLKKQTIEEYSINKKYLMQWFASVIHVFSGEELQPVLSEIIAALYRYTELQEAERKSQQ 2406

Query: 355  VYTRLMEEVCGGGRPYLHADLLLTEHQRVRDKAMYAFNAKRK 396
                L+ E     +  + A +    +Q VR+ A+     +R+
Sbjct: 2407 ELADLVTESLQVLQEKVGATVFARAYQEVRNAAIEVRRERRE 2448


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/68 (26%), Positives = 30/68 (44%)

Query: 330  LPEPKSMLVATAEANNLTAVAEAKEVYTRLMEEVCGGGRPYLHADLLLTEHQRVRDKAMY 389
            LP P  + V    A  L A     + Y+R+++E C     Y+   +L  E +   D A +
Sbjct: 1466 LPNPSIITVTDDVATILHAAFIQFDHYSRIVQEQCQQIFQYVVRKVLAMEGRLDYDDAYF 1525

Query: 390  AFNAKRKM 397
             FN +  +
Sbjct: 1526 DFNVESSL 1533


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 290 VPMLLAPE-----NLVPKLINGQKVKAKDLVQYFKSYMNIYKGNELPEPKS 335
           +P LLAP      N+V +++ G+  + +    Y  S+ NIY   E P+ +S
Sbjct: 404 IPPLLAPIQERLLNMVSQILTGKNFEIRTNDTYTPSFTNIYSARE-PDQRS 453


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 158 MLSSVQIYNLSQNIQEDDLQHLQLFTEYGR 187
           +LS ++++ +  +I  +DL HL L  +Y R
Sbjct: 207 LLSPLEVHTIFTHISSEDLAHLGLNEQYAR 236


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,632
Number of Sequences: 5004
Number of extensions: 85776
Number of successful extensions: 207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 12
length of query: 564
length of database: 2,362,478
effective HSP length: 76
effective length of query: 488
effective length of database: 1,982,174
effective search space: 967300912
effective search space used: 967300912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)