Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000767-TA|BGIBMGA000767-PA|IPR003191|Guanylate-binding
protein
         (564 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   6.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   8.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   8.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 153 FALSTMLSSVQIYN-LSQNIQEDDLQ---HLQLFTEYGRLALEDGGRTPFQRLQFLVRD 207
           F+L+++L +V  Y   S   Q   L    H+ + T    L   + GR  F  +QFLV D
Sbjct: 296 FSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLD 354


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 233 DKQHPELQSLRK--HITACFSELACFLMPHP 261
           DK  P L   R+  + TAC   LAC L P+P
Sbjct: 195 DKVAPILVRARETPNYTACPPTLACPLNPNP 225


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 217 GADGGMQILSRRLKVSDKQHPELQSLRKHITACFSELAC 255
           G +    +L  RL  +    P L S   H+++     AC
Sbjct: 261 GNEDANLLLKARLNPNSSLQPSLASHHSHLSSALGRSAC 299


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,459
Number of Sequences: 429
Number of extensions: 5472
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 564
length of database: 140,377
effective HSP length: 61
effective length of query: 503
effective length of database: 114,208
effective search space: 57446624
effective search space used: 57446624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)