Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000767-TA|BGIBMGA000767-PA|IPR003191|Guanylate-binding
protein
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38840.1 68415.m04772 guanylate-binding family protein simila...    52   1e-06
At5g46070.1 68418.m05665 guanylate-binding family protein contai...    42   0.001
At5g44270.1 68418.m05418 hypothetical protein                          31   2.7  
At4g13460.1 68417.m02102 SET domain-containing protein (SUVH9) i...    31   2.7  
At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containi...    30   3.6  
At4g20400.1 68417.m02978 transcription factor jumonji (jmj) fami...    30   4.7  
At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative i...    30   4.7  
At5g67270.1 68418.m08480 microtubule-associated EB1 family prote...    29   6.2  
At5g57035.1 68418.m07119 protein kinase family protein contains ...    29   6.2  
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my...    29   8.2  

>At2g38840.1 68415.m04772 guanylate-binding family protein similar
           to SP|Q01514 Interferon-induced guanylate-binding
           protein 1 (Guanine nucleotide-binding protein 1)
           (Interferon-gamma inducible protein MAG-1) {Mus
           musculus}; contains Pfam profile PF02263:
           Guanylate-binding protein, N-terminal domain
          Length = 679

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 29/154 (18%)

Query: 21  VVDTGPDHT-FTLDEEALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDFFLRYMHYKY 79
           +V+  P HT   L  E L+++          +  ++V G +R GKSFLL+  L    Y  
Sbjct: 33  IVEPAPGHTKLQLSREGLEAI----SRITTPISAVAVIGPYRSGKSFLLNQLLSLSCY-- 86

Query: 80  XXXXXXXXXXXXXXDPLQGFSWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGA 139
                            +GF      +  T GI +W    +  +D G K ++I LDT+G 
Sbjct: 87  -----------------EGFGVGHMRDTKTKGIWVWGTPLELEID-GVKTSVIYLDTEG- 127

Query: 140 FDS--ESTVRDCATVFALSTMLSSVQIYNLSQNI 171
           F+S  +S V D   +FAL+T++SSV IYNL + +
Sbjct: 128 FESVGKSNVYD-DRIFALATVMSSVLIYNLPETV 160



 Score = 35.9 bits (79), Expect = 0.071
 Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 14/173 (8%)

Query: 238 ELQSLRKHITACFSELACFLMPHPGLKVATNPQFDGRLADIESEFKRSLQQFVPMLLAPE 297
           ++  +R  +         F +P P L        D +  D++S +     Q   ++ +  
Sbjct: 307 QVNQIRDSLAIMGDNSTAFSLPQPHLM--RTKLCDLKDEDLDSTYVARRDQLKKLVASI- 363

Query: 298 NLVPKLINGQKVKAKDLVQYFKSYMNIYKGNELPEPKSMLVATAEANNLTAVAEAKEVYT 357
            + PK++ G+ +  K+ + + +  ++     E+P   S++    E  N   V    ++Y 
Sbjct: 364 -IRPKIVQGKTLNGKEFISFLEQILDALNKGEIPSTGSLV----EVFNKDIVERCVKLYN 418

Query: 358 RLMEEVCGGGRPYLHADLLLTEHQRVRDKAMYAFNAKRKMGGRDFSQAYFDQL 410
             M  V    R  +  + L + H+   ++A+ AF+A+    GR  ++   DQL
Sbjct: 419 EKMVRV----RLPMSEESLQSAHEMAHNEAIKAFDAQH--FGRQHAKKSVDQL 465


>At5g46070.1 68418.m05665 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 1060

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 85/381 (22%), Positives = 137/381 (35%), Gaps = 47/381 (12%)

Query: 16  PHGVQVVDTGPDHTFTLDEEALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDFFLRYM 75
           P  +++V       F +D EA+ +L L ++     + V+SV G  R+GKSF+L+  L   
Sbjct: 39  PRPIRLVYCDEKGKFRMDPEAVATLQLVKE----PIGVVSVCGRARQGKSFILNQLLGRS 94

Query: 76  HYKYXXXXXXXXXXXXXXDPLQGFSWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLD 135
           +                     GF      +  T G+ +WS   K T  DG +  ++LLD
Sbjct: 95  N---------------------GFQVASTHKPCTKGLWLWSSPIKRTALDGTEYNLLLLD 133

Query: 136 TQG--AFDSESTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALEDG 193
           ++G  A+D      D A++  LS +    +   +  +        L  F+      L D 
Sbjct: 134 SEGIDAYDQTMGGIDEASLDRLSLVTQMTKHIRVKASGGTSSRSELGQFSPIFVWLLRD- 192

Query: 194 GRTPFQRLQFLVRDWSFPYEAPYGADGGMQILSRRLKVSDKQHPELQSLRKHITACFSEL 253
                     LV D        Y     ++I  R ++ S         +R  I A F + 
Sbjct: 193 ------FYLDLVEDNRKISPRDY-----LEIALRPVQGSGGDIGAKNEIRDSIRALFPDR 241

Query: 254 ACFLMPHPGLKVATNPQFDG-RLADIESEFKRSLQQFVPMLLAPENLVPKLINGQKVKAK 312
            CF +  P        + D   L  +  EF   L  F   +   E   PK + G  +   
Sbjct: 242 ECFTLVRPLNNEKDLQRLDQISLEKLRPEFGAGLDAFTKFVF--EKTRPKQLGGTVMTGP 299

Query: 313 DLVQYFKSYMNIYKGNELPEPKSMLVATAEANNLTAVAEAKEVYTRLMEEVCGGGRPYLH 372
            LV   +SY++      +P   S   +  E     A     E Y    ++      P   
Sbjct: 300 ILVGITQSYLDALNNGAVPTITSSWQSVEETECRRAYDSGVEAYMAAFDQ---SKAP--E 354

Query: 373 ADLLLTEHQRVRDKAMYAFNA 393
              L  EH+    KA+  FN+
Sbjct: 355 EGALREEHEEAVRKALAIFNS 375


>At5g44270.1 68418.m05418 hypothetical protein
          Length = 309

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 224 ILSRRLKVSDKQHPELQSLR-KH-ITACFSE-LACFLMPHPGLKVATNPQFDGRLADIES 280
           + S+R++   +   E++ L+ KH +  CF++ LA   MP P       P+F     D  +
Sbjct: 119 VTSQRVRPKQQSCTEMRKLKTKHALPLCFTKILAAPAMPTPQRSTPHPPEFQVNHTDQTT 178

Query: 281 EFKRSLQQF 289
            FKRS  ++
Sbjct: 179 RFKRSYPKY 187


>At4g13460.1 68417.m02102 SET domain-containing protein (SUVH9)
           identical to SUVH9 [Arabidopsis thaliana] GI:13517759;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH9 (SUVH9) GI:13517758
          Length = 650

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 6   TEKPAPAPRGPHGVQVVDTGPDHTFTLDEEALKSLLLKEDVR 47
           T++P P PR    V++ D GP+      E   K+ ++ + +R
Sbjct: 118 TQRPRPQPRSSELVRITDVGPESERQFREHVRKTRMIYDSLR 159


>At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 650

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 10/102 (9%)

Query: 306 GQKVKAKDLVQYFKSYMNIYKGNELPEPKSMLVATAEANNLTA------VAEAKEVYTRL 359
           GQ V+   +V+  K YM     + L    S L   +EA+ L        V   ++ Y  +
Sbjct: 354 GQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSM 413

Query: 360 MEEVCGGGRPYLHADLLLTEHQR--VRDKAMY--AFNAKRKM 397
           +E +CG G+     ++L   H++  V D  MY   F+A  K+
Sbjct: 414 LESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKL 455


>At4g20400.1 68417.m02978 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 954

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 260 HPGLKVATNPQFDGRLADIESEFKRSLQQ 288
           HPG K + N +F  ++ D+E E+ R ++Q
Sbjct: 199 HPGSKASENKKFKPKVKDLEGEYWRIVEQ 227


>At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 302

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 234 KQHPELQSLRKHITACFSELA-CFLMPHPGLKVA 266
           + HPE++S+  +++    E A CF+ PHP + V+
Sbjct: 269 RMHPEVRSIYINLSYALWETALCFVFPHPNIYVS 302


>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profiles PF00307: Calponin homology (CH)
           domain, PF03271: EB1 protein
          Length = 329

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 241 SLRKHITACFSELACFLMP--HPGLKVATNPQFDGRLA-DIESEFKRSLQQFVPMLLAPE 297
           +L K   AC   + C LM   HPG        FD +   ++   +K     F  + +   
Sbjct: 30  NLSKVEEACSGAVHCQLMDSVHPGTVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKH 89

Query: 298 NLVPKLINGQKVKAKDLVQYFKSYMNIYKGNE 329
             V KL+ G+ +   + +Q+ K Y +   G +
Sbjct: 90  IEVSKLVKGRPLDNLEFMQWMKKYCDSVNGGQ 121


>At5g57035.1 68418.m07119 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 786

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 15/202 (7%)

Query: 206 RDWSFPYEAPYG-ADGGMQILSRRLKVSDKQHPELQSLRKHITACFSELACFLMPHPGLK 264
           R  S P+  P        Q  S  + + D +H   +S+ +H T   S++   + P P LK
Sbjct: 230 RPGSLPHSHPTSRVYSDAQSSSTDIVLVDDEH--CRSILRHSTVSTSKIQ--MDPRPHLK 285

Query: 265 VATNPQFDGRLADIESEFKRSLQQFVPMLL-APENLVPKLINGQKVKAKDLVQYFKSYMN 323
              +    G  A++E + ++ +Q  + M   A E LV K    Q + ++ +    K    
Sbjct: 286 TPKS----GVRAEVE-QLRKEVQTTLSMYKQACEELVHKQTQVQSLSSECI----KETER 336

Query: 324 IYKGNELPEPKSMLVATAEANNLTAVAEAKEVYTRLMEEVCGGGRPYLHADLLLTEHQRV 383
           +    E  E +    A  +  +L AV E +E  + L +E C      L A     E Q+V
Sbjct: 337 VITALEKEEMRRKAAAEEKEKHLKAVKEVEEAKSMLAKEFCERQLAELDALKQSIEKQKV 396

Query: 384 RDKAMYAFNAKRKMGGRDFSQA 405
            ++        RK    + + A
Sbjct: 397 IEQLFLRDGRYRKYTKEEIAAA 418


>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
           myosin II heavy chain (GI:19879404) [Loligo pealei];
           ESTs gb|AA042402,gb|ATTS1380 come from this gene
          Length = 828

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 275 LADIESEFKRSLQQFVPMLLAPENLVPKLINGQKVKAKDLVQYFKSYMNI 324
           LAD  ++ K  +Q+    L + +    + +N +  +AKDL+   KS+ N+
Sbjct: 392 LADTNNQLKIKIQELEGYLDSEKETAIEKLNQKDTEAKDLITKLKSHENV 441


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,850,056
Number of Sequences: 28952
Number of extensions: 456037
Number of successful extensions: 968
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 13
length of query: 564
length of database: 12,070,560
effective HSP length: 85
effective length of query: 479
effective length of database: 9,609,640
effective search space: 4603017560
effective search space used: 4603017560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)