GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000767-TA|BGIBMGA000767-PA|IPR003191|Guanylate-binding
protein
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0300 + 32967935-32968029,32968975-32969077,32969175-329692...    69   1e-11
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869...    62   9e-10
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434...    57   3e-08
12_02_1191 + 26826884-26827345                                         34   0.26 
05_06_0215 + 26444752-26444803,26444899-26445044,26445368-264455...    33   0.46 
04_04_1332 + 32718584-32718706,32718892-32718960,32719069-327191...    31   3.2  
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559...    30   4.3  
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008     29   7.5  
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081...    29   7.5  
11_01_0380 + 2887962-2888684                                           29   7.5  
08_02_0260 + 14990324-14990916,14991055-14991245,14997427-149974...    29   9.9  

>03_06_0300 +
           32967935-32968029,32968975-32969077,32969175-32969244,
           32969464-32969581,32969687-32969744,32969831-32969895,
           32969990-32969996,32970087-32970147,32970757-32970776,
           32970858-32970923,32971126-32971293,32971372-32971629,
           32972098-32972310,32972824-32973099
          Length = 525

 Score = 68.9 bits (161), Expect = 1e-11
 Identities = 78/303 (25%), Positives = 132/303 (43%), Gaps = 47/303 (15%)

Query: 111 GILMWSEIFKATLDDGEKVAIILLDTQGAFDS--ESTVRDCATVFALSTMLSSVQIYNLS 168
           GI +W    +  +D G KV+++ LDT+G F+S  +S V D   +FAL+T+LSSV IYNL 
Sbjct: 90  GIWIWGTPVEMDID-GSKVSVLYLDTEG-FESVGKSNVYD-DRIFALATVLSSVLIYNLP 146

Query: 169 QNIQEDDLQHLQLFTE-----YGRLALEDGGRTPFQRLQFLVRDWSFPYEAPYGADGGMQ 223
           + ++E D+  L    E     YGR+  +D    P + L  + RD+               
Sbjct: 147 ETVREADISRLSFAVEIAEEFYGRVKGQDVAFEPAKLLWLIQRDF--------------- 191

Query: 224 ILSRRLKVSDKQHPELQSLRKHITACFSELACFLMPHPGLKVATNPQFDGRLAD-IESEF 282
                  + DK   E+  +R  +    +    F +P P L+       D R  D +  + 
Sbjct: 192 -------LRDKYIDEVNQIRDSLAVMGNNSTAFSLPQPHLQRTKLCDMDDRELDPLYVKR 244

Query: 283 KRSLQQFVPMLLAPENLVPKLINGQKVKAKDLVQYFKSYMNIYKGNELPEPKSMLVATAE 342
           +  L+Q V  +       PK++ G+ +  K+ V + +  +      E+P   S++    E
Sbjct: 245 RDELKQVVASITR-----PKIVQGKTLNGKEFVSFLQQILEALNKGEIPSTGSLV----E 295

Query: 343 ANNLTAVAEAKEVYTRLMEEVCGGGRPYLHADLLLTEHQRVRDKAMYAFNAKRKMGGRDF 402
             N   +    +VY   M+    G R  +  D L   H+   D+A   F+ K+  G    
Sbjct: 296 IFNKAILDRCLKVYRDKMD----GLRLPVPVDRLQQVHETAIDQARMLFD-KQHFGKHHA 350

Query: 403 SQA 405
           +Q+
Sbjct: 351 AQS 353


>05_07_0116 -
           27785083-27786123,27786201-27786278,27786364-27786976,
           27787128-27787213,27787316-27787438,27787600-27787734,
           27787930-27788019,27788796-27788981,27789560-27789661,
           27789787-27789900,27790010-27790153,27790260-27790325,
           27790895-27791056,27791668-27791916
          Length = 1062

 Score = 62.5 bits (145), Expect = 9e-10
 Identities = 92/396 (23%), Positives = 150/396 (37%), Gaps = 47/396 (11%)

Query: 30  FTLDEEALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDFFLRYMHYKYXXXXXXXXXX 89
           F +D EA+ +L L +      V V+SV G  R+GKSF+L+  L                 
Sbjct: 47  FVMDPEAVAALQLVKG----PVGVVSVCGRARQGKSFVLNQLLGRS-------------- 88

Query: 90  XXXXDPLQGFSWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDC 149
                   GF         T G+ MWS   K T  DG +  ++LLDT+G    + T    
Sbjct: 89  -------SGFQVAPTHRPCTKGLWMWSAPLKRTGLDGTEYNLVLLDTEGIDAYDQTGTYS 141

Query: 150 ATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGR--LALEDGGRTPFQRL------ 201
             +F+L+ +LSS+ IYN    I E  L  L L TE  +       GGR+    L      
Sbjct: 142 IQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTEMTKHIRVRASGGRSTASELGHFSPV 201

Query: 202 -QFLVRDWSFPY---EAPYGADGGMQILSRRLKVSDKQHPELQSLRKHITACFSELACFL 257
             +L+RD+                +++  R ++   +      ++R+ I A F +  C  
Sbjct: 202 FVWLLRDFYLDLTEDNRKITPRDYLELALRPVQGGGRDVSSKNAIRESIRALFPDRECIT 261

Query: 258 MPHPGLKVATNPQFDG-RLADIESEFKRSLQQFVPMLLAPENLVPKLINGQKVKAKDLVQ 316
           +  P        + D   L +   EF+  L      +   +   PK +    +    L  
Sbjct: 262 LVRPVNNEKDLQRLDQLPLNNFRPEFRSGLDALTKFVF--DRTRPKQLGASTLTGPVLSG 319

Query: 317 YFKSYMNIYKGNELPEPKSMLVATAEANNLTAVAEAKEVYTRLMEEVCGGGRPYLHADLL 376
             +S+++      +P   S   +  EA    A   A + Y    +      R     D +
Sbjct: 320 LTQSFLDAINTGAVPTISSSWQSVEEAECRRAYDSAIDTYNSSFDR-----RKPAEEDAM 374

Query: 377 LTEHQRVRDKAMYAFNAKRKMGGRDFSQAYFDQLAQ 412
              H+    KA+  FNA     G   +++ F++L Q
Sbjct: 375 REAHEDALKKAVSVFNASAV--GAGLARSKFEKLLQ 408


>07_01_0584 +
           4345134-4345237,4346165-4346267,4346397-4346466,
           4346552-4346590,4346684-4346801,4346894-4346951,
           4347031-4347095,4347281-4347341,4347678-4347779,
           4348005-4348070,4348399-4348443,4348540-4348797,
           4349289-4349501,4350103-4350411,4350461-4350613
          Length = 587

 Score = 57.2 bits (132), Expect = 3e-08
 Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 25/161 (15%)

Query: 26  PDHTFTLDEEALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDFFLRYMHYKYXXXXXX 85
           PDH  T    A + L   + + +  +  ++V G +R GKSFLL+  L     K       
Sbjct: 41  PDHGHTKLRLAKEGLEAIKRI-ETPIAAVAVIGPYRSGKSFLLNQLLSLTCNK------- 92

Query: 86  XXXXXXXXDPLQGFSWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDS--E 143
                       GF      +  T GI +W    +  ++ G KV+++ LDT+G F+S  +
Sbjct: 93  ------------GFGVGHMRDTKTKGIWVWGTPIELDVN-GSKVSVLYLDTEG-FESIGK 138

Query: 144 STVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTE 184
           S V D   +FAL+T+LSS+ IYNL + I+E D+  L    E
Sbjct: 139 SNVYD-DRIFALATVLSSILIYNLPETIREADISRLSFAVE 178


>12_02_1191 + 26826884-26827345
          Length = 153

 Score = 34.3 bits (75), Expect = 0.26
 Identities = 20/49 (40%), Positives = 25/49 (51%)

Query: 351 EAKEVYTRLMEEVCGGGRPYLHADLLLTEHQRVRDKAMYAFNAKRKMGG 399
           E K   T LM++V GG    L AD++ T     R  A  A NA R+ GG
Sbjct: 84  ENKATTTTLMKDVVGGAAEALPADMVATREDADRVAAAAARNAARRGGG 132


>05_06_0215 +
           26444752-26444803,26444899-26445044,26445368-26445517,
           26445595-26445739,26446550-26446735,26446813-26446886,
           26446966-26447047,26447470-26447858
          Length = 407

 Score = 33.5 bits (73), Expect = 0.46
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 204 LVRDWSFPYEAPYGADGG--MQILSRRLKVSDKQHPELQSLRKHITACFSELACFLMPHP 261
           +V+ W   Y++P+  DG   + IL+   K S  +   +Q  +        +L   L PHP
Sbjct: 235 MVQTWEEKYDSPFSYDGDHLLTILNADAKPSSSEAEGMQKQKAEGQVPAQDLKSLLTPHP 294

Query: 262 GLKVATNPQFDGRLADIESEFKRSLQQFVPMLLAP 296
             K+   P+       +E      L    P+LL P
Sbjct: 295 --KLRRTPRVP---VPLEEHVPLQLHVVAPLLLVP 324


>04_04_1332 +
           32718584-32718706,32718892-32718960,32719069-32719155,
           32719865-32719971,32720066-32720187,32720462-32720535,
           32720833-32720946,32721100-32721213
          Length = 269

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 241 SLRKHITACFSELACFLMP--HPGLKVATNPQFDGRLA-DIESEFKRSLQQFVPMLLAPE 297
           SL K   A    + C LM   HPG+       FD +   D+   +K     F  + L+  
Sbjct: 35  SLAKVEEAASGAVQCQLMDMVHPGVVPMHKVNFDAKTEYDMIQNYKILQDVFNKLRLSKN 94

Query: 298 NLVPKLINGQKVKAKDLVQYFKSYMNIYKGNELPE 332
             V KL+ G+ +   + +Q+ K Y +   G  + E
Sbjct: 95  IEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNE 129


>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
            28256701-28256800,28256887-28256972,28257078-28257239,
            28257965-28258101,28258233-28258281,28258688-28258746,
            28258862-28258896,28259384-28259433,28260173-28260332,
            28260898-28260963,28261065-28261162,28261649-28261696,
            28262114-28262242,28262667-28262769,28262858-28262954,
            28263181-28263241,28263659-28263740,28263845-28263962,
            28264039-28266325
          Length = 1481

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 219  DGGMQILSRRLKVSDKQHPELQSLRKHITACFSELACFLM 258
            DG +QI SR++K S  + P+L  + K +  C  E++ F++
Sbjct: 1043 DGSVQIFSRQMKESTSRFPDLVGMIKEL--CSIEVSSFIL 1080


>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
          Length = 1058

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 105 SERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQI 164
           +E +  G+  + ++FK  LDDG  VAI +L+ Q      S   +C  V  ++   + ++I
Sbjct: 750 NEDNLLGVGSFGKVFKGRLDDGLVVAIKILNMQVERAIRSFDAEC-HVLRMARHRNLIKI 808

Query: 165 YNLSQNI 171
            N   N+
Sbjct: 809 LNTCSNL 815


>11_08_0032 -
           27807489-27807497,27807641-27807684,27808046-27808168,
           27810770-27810983,27811382-27811530,27811719-27812618,
           27812964-27814659
          Length = 1044

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 105 SERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQI 164
           +E +  G+  + ++FK  LDDG  VAI +L+ Q      S   +C  V  ++   + ++I
Sbjct: 695 NEDNLLGVGSFGKVFKGRLDDGLVVAIKILNMQVERAIRSFDAEC-HVLRMARHRNLIKI 753

Query: 165 YNLSQNI 171
            N   N+
Sbjct: 754 LNTCSNL 760


>11_01_0380 + 2887962-2888684
          Length = 240

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 318 FKSYMNIYKGNELPEPKSMLVATAEANNLTAV-AEAKEVYTRLMEEVCG 365
           F+S++ I +  + P  K+   ATAE  NL  + AEA+E+   L++   G
Sbjct: 125 FESFVRIARKAQKPFKKTGSKATAECCNLVRIMAEAREMAVSLLDTTSG 173


>08_02_0260 +
           14990324-14990916,14991055-14991245,14997427-14997495,
           14998134-14999221
          Length = 646

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 6/112 (5%)

Query: 115 WSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLSQNIQED 174
           +  ++K +L DG  +A+ +L+     D E  + + +++  +S  ++ V +  L Q+  + 
Sbjct: 357 YGTVYKGSLSDGSTIAVKILEDSNN-DGEDFINEVSSIGRIS-HINVVTLLGLCQHGSKR 414

Query: 175 DLQHLQLFTEYGRL-ALEDGGRTPFQRLQFLVRDWSFPYEAPYGADGGMQIL 225
            L  +  +   G L     GG    Q+ +FL+  W   Y+   G   G+  L
Sbjct: 415 AL--IYEYMPNGSLDKFAVGGNDTMQQEKFLI-SWEKLYDILVGVAQGLDYL 463


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,899,922
Number of Sequences: 37544
Number of extensions: 584460
Number of successful extensions: 1405
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1393
Number of HSP's gapped (non-prelim): 17
length of query: 564
length of database: 14,793,348
effective HSP length: 86
effective length of query: 478
effective length of database: 11,564,564
effective search space: 5527861592
effective search space used: 5527861592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)