GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000767-TA|BGIBMGA000767-PA|IPR003191|Guanylate-binding
protein
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37041| Best HMM Match : GBP (HMM E-Value=0)                        437   e-122
SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)                   62   1e-09
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)                      40   0.004
SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22)                    40   0.004
SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6)                31   1.9  
SB_58520| Best HMM Match : RVT_1 (HMM E-Value=0.035)                   31   1.9  
SB_48376| Best HMM Match : HMG-CoA_red (HMM E-Value=6.8e-11)           31   1.9  
SB_46895| Best HMM Match : rve (HMM E-Value=1.6e-25)                   29   9.9  

>SB_37041| Best HMM Match : GBP (HMM E-Value=0)
          Length = 466

 Score =  437 bits (1076), Expect = e-122
 Identities = 218/447 (48%), Positives = 292/447 (65%), Gaps = 32/447 (7%)

Query: 94  DPLQGFSWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVF 153
           + L+GFSWRGGSERDTTGILMW++ +     DGE+V ++L+DTQGAFDS STV+DCAT+F
Sbjct: 12  EALEGFSWRGGSERDTTGILMWNKPYICKRPDGEEVVVLLMDTQGAFDSSSTVKDCATIF 71

Query: 154 ALSTMLSSVQIYNLSQNI--QEDDLQHLQLFTEYGRLAL-----------------EDGG 194
           ALSTM SS Q++     +  + ++++  Q+  E     L                 E+  
Sbjct: 72  ALSTMTSSTQLFTEYGKLAMENNEIKPFQVNNEIKPFLLNNEIKPFQVNNEIKPFQENKE 131

Query: 195 RTPFQRLQFLVRDWSFPYEAPYGADGGMQILSRRLKVSDKQHPELQSLRKHITACFSELA 254
             PFQRL FLVRDWSFPYEA YG  GG QIL RRLK +++QH EL  +RKHI  CF ++ 
Sbjct: 132 IKPFQRLLFLVRDWSFPYEANYGEAGGSQILERRLKTTERQHSELLQVRKHIKECFEKIG 191

Query: 255 CFLMPHPGLKVATNPQFDGRLADIESEFKRSLQQFVPMLLAPENLVPKLINGQKVKAKDL 314
           CFLMPHPGL+VATNP FDGRL DI+ EFK +L++ +P LLAPENL  K ING++V  + L
Sbjct: 192 CFLMPHPGLRVATNPTFDGRLVDIDDEFKENLRKLIPSLLAPENLELKGINGEEVTCRGL 251

Query: 315 VQYFKSYMNIYKGNELPEPKSMLVATAEANNLTAVAEAKEVYTRLMEEVCGGGRPYLHAD 374
           ++YFK+YM I++G+ELP+PKSML+ATAEANNL A+A AK+ Y++ ME V GG  PYL  +
Sbjct: 252 LEYFKAYMKIFQGDELPQPKSMLLATAEANNLAALATAKDTYSKAMESVVGGDMPYLSPN 311

Query: 375 LLLTEHQRVRDKAMYAFNAKRKMGGRDFSQAYFDQLAQPRXXXXXXXXXXXXLEEQFLQF 434
            L  +H   RD A+  F+  RKMGG++FS+ Y +QL +              ++E F  F
Sbjct: 312 ELERKHLETRDSALSHFHGTRKMGGKEFSEKYVEQLLK-------------EIDETFENF 358

Query: 435 KAHNESKNIFKAARTPSXXXXXXXXXXXXSGVFGLLGLYPLANVANFAMGLALLTLVLWA 494
              N+SKNIF AARTP+            S VF  +G+     + N  + + LL +++W+
Sbjct: 359 VKLNDSKNIFNAARTPAVFFTIVVLSYILSSVFNSIGILSFTRMCNLTIWMGLLGILVWS 418

Query: 495 YIRYSGEMREFGVTIDDTATVMWDNVL 521
           YIR+SGE REFG  +D  A ++WD  L
Sbjct: 419 YIRFSGEFREFGAKLDHLAELIWDEEL 445


>SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)
          Length = 368

 Score = 62.1 bits (144), Expect = 1e-09
 Identities = 31/81 (38%), Positives = 50/81 (61%)

Query: 108 DTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNL 167
           +T GI MW +  K  L DG++VA++ LDT+G   +  +    A VFA++T+LSS  IYN 
Sbjct: 154 ETMGIWMWGKPLKIKLQDGQEVALVFLDTEGFAATNVSESYDAKVFAVATLLSSYLIYNS 213

Query: 168 SQNIQEDDLQHLQLFTEYGRL 188
            + I + D+ +L+L +   +L
Sbjct: 214 VKIIDQGDIDYLELLSRRTQL 234


>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
          Length = 708

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 108 DTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYN 166
           +T GI ++    K    +G +V ++LLD++G   + +   D  +VF LS +LSSV IYN
Sbjct: 86  ETMGIWLYVVDQKFKDANGREVTVVLLDSEGINATGAQKSDDHSVFTLSVLLSSVMIYN 144


>SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22)
          Length = 621

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 104 GSERD--TTGILMWSEIFKATLDDGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSS 161
           G E D  T G+ +W    +   D G+   ++L+D++G   S+S  ++   +  L+ +LSS
Sbjct: 178 GDELDPKTMGLWLWVVPKQFRDDKGQPFTVVLVDSEGTKASQSQQKEDDVIVTLTLLLSS 237

Query: 162 VQIYNLSQNIQEDDLQHL 179
           V IYN        DL+ L
Sbjct: 238 VLIYNSEGVPTASDLEQL 255


>SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6)
          Length = 526

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 100 SWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDS 142
           +++ G   +T    + ++I +A +DDG+ V ++LLD   AFD+
Sbjct: 446 AYKKGHSTETALTRIQNDILRA-IDDGQSVILVLLDLSAAFDT 487


>SB_58520| Best HMM Match : RVT_1 (HMM E-Value=0.035)
          Length = 556

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 100 SWRGGSERDTTGILMWSEIFKATLDDGEKVAIILLDTQGAFDS 142
           +++ G   +T    + ++I +A +DDG+ V ++LLD   AFD+
Sbjct: 367 AYKKGHSTETALTRIQNDILRA-IDDGQSVILVLLDLSAAFDT 408


>SB_48376| Best HMM Match : HMG-CoA_red (HMM E-Value=6.8e-11)
          Length = 135

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 125 DGEKVAIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLSQNI 171
           DG++  + +  T+G   + ST R C+ +  L T +SS+   N+S+N+
Sbjct: 52  DGQQFFVPMATTEGCLVA-STNRGCSALMVLKTTVSSLSELNISKNL 97


>SB_46895| Best HMM Match : rve (HMM E-Value=1.6e-25)
          Length = 329

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 9/80 (11%)

Query: 259 PHPGL-KVATNPQFDGRLADIESEFKRSLQQFVPMLLAPENLVPKLINGQKVKAKDLVQY 317
           P+ GL    T+P  +G LA  E    R L+  +P L  PE L PKL   + VK K   + 
Sbjct: 151 PYLGLLSYRTSPLQNG-LAPCELLMSRQLRTQLPTL--PETLQPKLKMNELVKLKAKEEA 207

Query: 318 FKSYMNI-----YKGNELPE 332
           ++S   +     Y+  ELP+
Sbjct: 208 YRSNQKLSHDTRYQVKELPQ 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,417,927
Number of Sequences: 59808
Number of extensions: 607947
Number of successful extensions: 1305
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 14
length of query: 564
length of database: 16,821,457
effective HSP length: 86
effective length of query: 478
effective length of database: 11,677,969
effective search space: 5582069182
effective search space used: 5582069182
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)