Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000766-TA|BGIBMGA000766-PA|undefined
         (1690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    30   3.2  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    29   4.2  

>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 1652 QEYAAALLAAVFDLGVRGRLNVETHLAKTIQTLNL--HRAC 1690
            Q+Y    L A+ D    G L  E  L KTIQT+ L  H AC
Sbjct: 451  QQYGLEWLTALHDSNTNGILADEMGLGKTIQTIALLAHLAC 491


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 622 LPPEDNPLQVDKLEIADLIFQLCQFNPPDNITLPQGYSPPPLAITSLYWRGWL 674
           L P+D  L +    + + +FQ   FN PD +  P   S    A+ S+    WL
Sbjct: 88  LSPQDQLLSLQLNNVQESVFQQSTFNLPDALLDPGPASKEKQAVLSIGRPSWL 140


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,498,508
Number of Sequences: 5004
Number of extensions: 238371
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 2
length of query: 1690
length of database: 2,362,478
effective HSP length: 83
effective length of query: 1607
effective length of database: 1,947,146
effective search space: 3129063622
effective search space used: 3129063622
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)