Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000766-TA|BGIBMGA000766-PA|undefined
(1690 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34419| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 3e-46
SB_58359| Best HMM Match : DUF554 (HMM E-Value=5) 98 5e-20
SB_12325| Best HMM Match : Arf (HMM E-Value=8.4) 46 3e-04
SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 0.001
SB_52312| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 1.1
SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 2.0
SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 4.6
SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12) 32 4.6
SB_15386| Best HMM Match : CSE2 (HMM E-Value=0.18) 32 4.6
SB_45959| Best HMM Match : DUF1091 (HMM E-Value=3.6) 31 6.0
>SB_34419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 185 bits (450), Expect = 3e-46
Identities = 115/344 (33%), Positives = 179/344 (52%), Gaps = 22/344 (6%)
Query: 136 PNMFAHDTVTQSLCTLLKREQGAAFK-NKGNP-LVFVLACNMLYAGHRDSTNWPDIFIKV 193
P + +H + +L ++LKR+ K NK LV V+A N+L +++ WP+ F+KV
Sbjct: 378 PLLISH--LLMALTSILKRDISINIKTNKTTAALVPVMAANILLYIYQEEDEWPESFVKV 435
Query: 194 YIEDALNERWWVECSWCKCLVENILTAFGTKHPPASL--KPTEXXXXXXXXXXXXXXXXX 251
YIED+L +R WV+ C+ V+NILTAFGTK P + + ++
Sbjct: 436 YIEDSLGDRVWVDNEACQSFVDNILTAFGTKTTPRGITRQGSDPVSTSVITPTAGKEDEE 495
Query: 252 XTEDDVDNTELE---YTVFPRY--SSSYEAVEGLVMEAIKDQIQRRSGAPDAIGKGFLKL 306
E+ ++ LE V PR+ +S + + +ME + DQ+ RR+ D+I + L++
Sbjct: 496 LLEEVGMSSSLEDDIIPVIPRFLATSVEQNISSYIMELVHDQLSRRTPV-DSIPRNLLRV 554
Query: 307 LSATCGFPEIRMVAASRLEAWLHSGKLWKVAQELLAYVCCNCEPTAPRDHEVLAQLVRMR 366
L+ATCG+ ++R++ + R+E WL + KL + AQELL + NC + D EV++ L+RMR
Sbjct: 555 LTATCGYSQVRLLVSQRIEVWLQNPKLTRPAQELLMSLAQNCNSHSHEDVEVISNLIRMR 614
Query: 367 LKTKQLQLAYQACLREMVSESPALLRSVVTHTVYNELSNVRSPNNXX----------XXX 416
LKTK L Y C+RE++ L +V+ H +YNELS R+PNN
Sbjct: 615 LKTKPLANHYVTCIRELIGHHTENLGTVLKHVIYNELSTTRNPNNMSLLGMMYLHKPDTV 674
Query: 417 XXXXXXXXXXXXXXXDTFQELLVRSEDYLRPLRALTRECVRAAR 460
L + +DYLR RAL RE +R+ R
Sbjct: 675 AKGLLFESMLSVMAYHLHIMLNMNRDDYLRACRALLREVMRSLR 718
>SB_58359| Best HMM Match : DUF554 (HMM E-Value=5)
Length = 429
Score = 98.3 bits (234), Expect = 5e-20
Identities = 55/141 (39%), Positives = 81/141 (57%), Gaps = 5/141 (3%)
Query: 629 LQVDKLEIADLIFQLCQFNPPDNITLPQGYSPPPLAITSLYWRGWLLLTMIAAHNPQQFA 688
L V++LE+ D + LC ++ P+ I LP GY PP LAI +LYW+ W LL ++A+ NP
Sbjct: 102 LSVNRLELLDAVLNLCAYHYPNEIQLPAGYVPPKLAIANLYWKAWTLLAIVASLNPSSIG 161
Query: 689 ERAATTYPTL-RALI-EMCITNKPS-IEWGSGTGVDXXXXXXXXXXILQLETHLAAASNA 745
+ + T +P + + LI C K S E G IL+ ETHLAAA+
Sbjct: 162 KSSITCHPGISKTLINRSCRLGKFSHAEMYDGDD-SNKIAQLEKEDILEFETHLAAATTG 220
Query: 746 KLPVTEHNSRLLSQLTTLEPL 766
+ +TE NS LL+QLT+++P+
Sbjct: 221 -VTITESNSLLLAQLTSMDPV 240
Score = 45.2 bits (102), Expect = 5e-04
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 575 LHRLCCEAPLPQTTLLRLIFIGLAKEVPVAPAEVFELVEQLVRRACAL 622
L+ L + P+ + TL+R++ IGL+ E+PV E ++ ++L RRA +L
Sbjct: 3 LYSLASDVPVQEDTLMRVVIIGLSAELPVTAPEALDIADRLTRRAASL 50
>SB_12325| Best HMM Match : Arf (HMM E-Value=8.4)
Length = 154
Score = 46.0 bits (104), Expect = 3e-04
Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 19/150 (12%)
Query: 442 EDYLRPLRALTRECVRAARADSHXXXX---XXXXXXXXXXXXXXXEVRERAFASLADLFC 498
+DYLR RAL RE +R+ R + + +RER SL DL
Sbjct: 4 DDYLRACRALLREVMRSLRYEVNCVVLCRGFMSERTESQFKDLDSPLRERMLISLTDLIA 63
Query: 499 CCCL---------VTASHSKHQP-------EYRQQLCGIQAAALGWLQDTAVPVYRPSRH 542
+ V A+ ++ ++++ + IQ A+ WL ++ +
Sbjct: 64 MTTMLSVTPAVKDVAAAFARGDKKDLSVLHQFQKNVSTIQRDAVWWLHTVVPKMFNLTAK 123
Query: 543 DCQLALNKIMFVESADAYSKADNWPPEPER 572
+ L K++F+E + YS DNWP E ++
Sbjct: 124 EYNACLQKVLFLEPVENYSGKDNWPSEADK 153
>SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 43.6 bits (98), Expect = 0.001
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 852 RAACLVECIPRHVAAYIDFLASYAAKTPHKLHTEIVLDLCQVLMERSTVMNSVLGGASGP 911
+ C VE P + AY+ FLA + ++ +L++ Q+++ER T++N VL +S
Sbjct: 230 KMCCQVEIAPLRLQAYLVFLAEHTGGPLEMDFSDTLLEISQLVIERPTILNQVL--SSSN 287
Query: 912 SHPEQHRTLLAL 923
S E H+ +L +
Sbjct: 288 SGEETHKAILGM 299
Score = 40.3 bits (90), Expect = 0.013
Identities = 19/35 (54%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Query: 732 ILQLETHLAAASNAKLPVTEHNSRLLSQLTTLEPL 766
IL+ ETHLAAA+ + +TE NS LL+QLT+++P+
Sbjct: 9 ILEFETHLAAATTG-VTITESNSLLLAQLTSMDPV 42
>SB_52312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 690
Score = 33.9 bits (74), Expect = 1.1
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 1340 LVTLLAHRASWRTLHTCLTMLLDHP---GDWAPGSVLNLLETLCSSPRLCQGRDK--AAP 1394
L+ + H++ + TL L +L + +PG+ L+ L T PRL QGRD+ A
Sbjct: 134 LLASMTHQSRYDTLQDSLDWILAQDMNNTNLSPGAALDFLWTCFHIPRLWQGRDQKSCAI 193
Query: 1395 KHHQPPDALRLTHRQVGVLVGYIVSE 1420
K L L QV + G +++E
Sbjct: 194 KAGVEGPVLSLASGQVSHMAGLLLAE 219
>SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 33.1 bits (72), Expect = 2.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 359 LAQLVRMRLKTKQLQLAYQACLREMVSESPALLRSVVTHTVYNELSNV 406
L QL R RL L L Y+AC+R V + + + + + NEL +
Sbjct: 152 LIQLKRARLPPSDLSLIYKACIRSAVDHAVPVFHNALPQYLKNELVRI 199
>SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 31.9 bits (69), Expect = 4.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 359 LAQLVRMRLKTKQLQLAYQACLREMVSESPALLRSVVTHTVYNELSNV 406
L QL R RL L L Y+AC+R V + + + + + NEL +
Sbjct: 586 LIQLKRARLPPSDLSLFYKACIRSAVDYAVPVFHNALPQYLKNELVRI 633
>SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)
Length = 642
Score = 31.9 bits (69), Expect = 4.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 359 LAQLVRMRLKTKQLQLAYQACLREMVSESPALLRSVVTHTVYNELSNV 406
L QL R RL L L Y+AC+R V + + + + + NEL +
Sbjct: 504 LIQLKRARLPPSDLSLFYKACIRSAVDYAVPVFHNALPQYLKNELVRI 551
>SB_15386| Best HMM Match : CSE2 (HMM E-Value=0.18)
Length = 379
Score = 31.9 bits (69), Expect = 4.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 359 LAQLVRMRLKTKQLQLAYQACLREMVSESPALLRSVVTHTVYNELSNV 406
L QL R RL L L Y+AC+R V + + + + + NEL +
Sbjct: 241 LIQLKRARLPPSDLSLFYKACIRSAVDYAVPVFHNALPQYLKNELVRI 288
>SB_45959| Best HMM Match : DUF1091 (HMM E-Value=3.6)
Length = 360
Score = 31.5 bits (68), Expect = 6.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 359 LAQLVRMRLKTKQLQLAYQACLREMVSESPALLRSVVTHTVYNELSNV 406
L QL R RL L L Y+AC+R V + + + + + NEL +
Sbjct: 168 LIQLKRARLPPTDLSLFYKACIRSAVGYAVPVFHNALPQYLKNELVRI 215
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.134 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,813,289
Number of Sequences: 59808
Number of extensions: 1854026
Number of successful extensions: 3842
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3819
Number of HSP's gapped (non-prelim): 19
length of query: 1690
length of database: 16,821,457
effective HSP length: 92
effective length of query: 1598
effective length of database: 11,319,121
effective search space: 18087955358
effective search space used: 18087955358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 67 (31.1 bits)
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