Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000766-TA|BGIBMGA000766-PA|undefined
         (1690 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    28   0.56 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.99 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   5.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   9.2  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 0.56
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 505 ASHSKHQPEYRQQLCGIQAAALGWLQDTAVPVYRPSRHDCQLA 547
           A H  H+ +Y +    +Q  A GW  D  +P Y  S ++ +L+
Sbjct: 160 AYHRGHRKDYERW---VQQGAFGWSWDEVMPYYLKSENNTELS 199


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 23  GTKSTVVVSRDAEKRNIHKPSTSAADRKRDASSYGSQPPSK-RSRIGSPAETTGG 76
           G  ST V+     + N   PS +       +SS  S PP+K  +  G P++  GG
Sbjct: 493 GAASTAVIHEPVVETN-SSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGG 546


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 755 RLLSQLTTLEPLGAPRKPPQAIIESLQALNAQLRLGKLLCR 795
           R L +   +   G P+  PQ+++ S   L+  LR G L  R
Sbjct: 241 RHLERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTR 281


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 9.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 336 VAQELLAYVCCNCEPTAPRDHEVLAQLVRMRLKT 369
           VA E   + C NC     RDH+ + Q +  R  T
Sbjct: 600 VAGEQCCWHCFNCTQYQIRDHKDVTQCISCRQGT 633


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,447
Number of Sequences: 429
Number of extensions: 15736
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 4
length of query: 1690
length of database: 140,377
effective HSP length: 67
effective length of query: 1623
effective length of database: 111,634
effective search space: 181181982
effective search space used: 181181982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)