Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000766-TA|BGIBMGA000766-PA|undefined
         (1690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17070.1 68418.m02000 expressed protein                             33   2.2  
At3g16730.1 68416.m02136 expressed protein ; expression supporte...    31   6.7  

>At5g17070.1 68418.m02000 expressed protein
          Length = 277

 Score = 32.7 bits (71), Expect = 2.2
 Identities = 21/73 (28%), Positives = 34/73 (46%)

Query: 1205 GLVRADPAVLPDLPPRADREHLVALLESATPSTLEAIGNKIIESQDTAVVVDVISLILER 1264
            G+ R D AVLP++      E +  + E     TLEA+ +     QD  ++   +S  L++
Sbjct: 33   GVQRQDHAVLPEVLEHPGAEQIADMSEEEVKRTLEAVASTGKFWQDWEILKGTLSYWLKK 92

Query: 1265 NQEGYYENKVKPE 1277
                Y E K+  E
Sbjct: 93   VLSEYSEAKMTDE 105


>At3g16730.1 68416.m02136 expressed protein ; expression supported
           by MPSS
          Length = 695

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 29  VVSRDAEKRNIHKPSTSAADRKRDASSYGSQPPSKRSRIGSPAETTGGTSLEVDPVD 85
           V +R  EKR IH P   A        S+ S PP KR+   S +  T   SL++  ++
Sbjct: 603 VHNRKNEKRGIHLPQKRAKSPITKGKSHESPPPKKRNTC-SVSSQTRKVSLKISKIN 658


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,495,490
Number of Sequences: 28952
Number of extensions: 1301212
Number of successful extensions: 3009
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3008
Number of HSP's gapped (non-prelim): 2
length of query: 1690
length of database: 12,070,560
effective HSP length: 91
effective length of query: 1599
effective length of database: 9,435,928
effective search space: 15088048872
effective search space used: 15088048872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)