GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000766-TA|BGIBMGA000766-PA|undefined
         (1690 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    26   2.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    25   4.4  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 350 PTAPRDHEVLAQLVRMRLKTKQLQLAYQACLREMVSES 387
           P  P++ E + Q++  +  + Q+QL    C   M+  S
Sbjct: 188 PITPKEIERMVQIIHKKFSSIQMQLKQSTCEAVMILRS 225


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 755 RLLSQLTTLEPLGAPRKPPQAIIESLQALNAQLRLGKLLCR 795
           R L +   +   G P+  PQ+++ S   L+  LR G L  R
Sbjct: 237 RHLERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTR 277


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 339,205
Number of Sequences: 317
Number of extensions: 13053
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 2
length of query: 1690
length of database: 114,650
effective HSP length: 66
effective length of query: 1624
effective length of database: 93,728
effective search space: 152214272
effective search space used: 152214272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)