GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000766-TA|BGIBMGA000766-PA|undefined
         (1690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    38   0.092
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56...    31   6.1  
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201...    31   8.0  
02_02_0211 + 7898434-7898574,7898759-7899349,7899575-7899821,790...    31   8.0  

>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 37.5 bits (83), Expect = 0.092
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 3    STGRGAKSKAPQHPQDIFALGTKSTVVVSRDAEKRNIHKPSTSAA-DRKRDASSYGS-QP 60
            + G+G  +  P  P  + A      V+ S D    N++ PS+S+A  R +DAS+  + + 
Sbjct: 1983 TVGQGDHNSTPSAPLSMEAAPASPAVIKSSDTPSLNLNSPSSSSAGSRGQDASTPSTFEE 2042

Query: 61   PSKRSRIGSPAETTGGT 77
            P +   +  PA     T
Sbjct: 2043 PERTMEVSEPASVAAAT 2059


>08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-567734,
            567836-567907,567990-568106,570531-571676
          Length = 700

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 1044 QPPHYPPGTCTPTHFNLFASEPLPEEAEGEWGSAAPP 1080
            QPP+YPPG   P ++N +     P   + ++  +APP
Sbjct: 420  QPPNYPPG---PGNYNSYGPSQGPNYGQPQYPQSAPP 453


>07_03_1503 +
           27017933-27018063,27019668-27019727,27019996-27020101,
           27020254-27020325,27021008-27021061,27021707-27021856,
           27022206-27022547,27022651-27024684,27024706-27024947,
           27025658-27026235,27026329-27028183,27028533-27028851,
           27028980-27029417
          Length = 2126

 Score = 31.1 bits (67), Expect = 8.0
 Identities = 22/87 (25%), Positives = 35/87 (40%)

Query: 589 LLRLIFIGLAKEVPVAPAEVFELVEQLVRRACALPPEDNPLQVDKLEIADLIFQLCQFNP 648
           LL  + +G+   + ++   V   VE LVRR    P  DNP +     +   + +      
Sbjct: 315 LLMPVALGMIDIITLSQTYVRMFVEILVRRLSDGPVVDNPKRAHISSVIAEVLRYMVLAV 374

Query: 649 PDNITLPQGYSPPPLAITSLYWRGWLL 675
           PD       +  P   +  +Y RG LL
Sbjct: 375 PDTFVSLDCFPLPSFVVPDVYSRGALL 401


>02_02_0211 + 7898434-7898574,7898759-7899349,7899575-7899821,
            7900020-7900118,7900158-7900321,7900371-7900870,
            7901007-7901256,7901461-7901549,7901823-7902064,
            7902175-7902479,7902798-7902906,7903150-7903313
          Length = 966

 Score = 31.1 bits (67), Expect = 8.0
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 1638 QSALEKLPELVVGMQEYAAALLAAVFDLGVRGRLNVETHLAKTIQTLNLHRAC 1690
            Q+  E +PE    +QEY   LLAA  DL ++   + E     T++ L+ H  C
Sbjct: 228  QTRDESIPEAWERLQEYETELLAAKLDLLMKRLDDQEKRPQGTVKALDSHVTC 280


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,894,394
Number of Sequences: 37544
Number of extensions: 1744649
Number of successful extensions: 4070
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4064
Number of HSP's gapped (non-prelim): 8
length of query: 1690
length of database: 14,793,348
effective HSP length: 92
effective length of query: 1598
effective length of database: 11,339,300
effective search space: 18120201400
effective search space used: 18120201400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 67 (31.1 bits)