GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000766-TA|BGIBMGA000766-PA|undefined
         (1690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34419| Best HMM Match : No HMM Matches (HMM E-Value=.)             185   3e-46
SB_58359| Best HMM Match : DUF554 (HMM E-Value=5)                      98   5e-20
SB_12325| Best HMM Match : Arf (HMM E-Value=8.4)                       46   3e-04
SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   0.001
SB_52312| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   1.1  
SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   2.0  
SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   4.6  
SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)                 32   4.6  
SB_15386| Best HMM Match : CSE2 (HMM E-Value=0.18)                     32   4.6  
SB_45959| Best HMM Match : DUF1091 (HMM E-Value=3.6)                   31   6.0  

>SB_34419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score =  185 bits (450), Expect = 3e-46
 Identities = 115/344 (33%), Positives = 179/344 (52%), Gaps = 22/344 (6%)

Query: 136 PNMFAHDTVTQSLCTLLKREQGAAFK-NKGNP-LVFVLACNMLYAGHRDSTNWPDIFIKV 193
           P + +H  +  +L ++LKR+     K NK    LV V+A N+L   +++   WP+ F+KV
Sbjct: 378 PLLISH--LLMALTSILKRDISINIKTNKTTAALVPVMAANILLYIYQEEDEWPESFVKV 435

Query: 194 YIEDALNERWWVECSWCKCLVENILTAFGTKHPPASL--KPTEXXXXXXXXXXXXXXXXX 251
           YIED+L +R WV+   C+  V+NILTAFGTK  P  +  + ++                 
Sbjct: 436 YIEDSLGDRVWVDNEACQSFVDNILTAFGTKTTPRGITRQGSDPVSTSVITPTAGKEDEE 495

Query: 252 XTEDDVDNTELE---YTVFPRY--SSSYEAVEGLVMEAIKDQIQRRSGAPDAIGKGFLKL 306
             E+   ++ LE     V PR+  +S  + +   +ME + DQ+ RR+   D+I +  L++
Sbjct: 496 LLEEVGMSSSLEDDIIPVIPRFLATSVEQNISSYIMELVHDQLSRRTPV-DSIPRNLLRV 554

Query: 307 LSATCGFPEIRMVAASRLEAWLHSGKLWKVAQELLAYVCCNCEPTAPRDHEVLAQLVRMR 366
           L+ATCG+ ++R++ + R+E WL + KL + AQELL  +  NC   +  D EV++ L+RMR
Sbjct: 555 LTATCGYSQVRLLVSQRIEVWLQNPKLTRPAQELLMSLAQNCNSHSHEDVEVISNLIRMR 614

Query: 367 LKTKQLQLAYQACLREMVSESPALLRSVVTHTVYNELSNVRSPNNXX----------XXX 416
           LKTK L   Y  C+RE++      L +V+ H +YNELS  R+PNN               
Sbjct: 615 LKTKPLANHYVTCIRELIGHHTENLGTVLKHVIYNELSTTRNPNNMSLLGMMYLHKPDTV 674

Query: 417 XXXXXXXXXXXXXXXDTFQELLVRSEDYLRPLRALTRECVRAAR 460
                               L +  +DYLR  RAL RE +R+ R
Sbjct: 675 AKGLLFESMLSVMAYHLHIMLNMNRDDYLRACRALLREVMRSLR 718


>SB_58359| Best HMM Match : DUF554 (HMM E-Value=5)
          Length = 429

 Score = 98.3 bits (234), Expect = 5e-20
 Identities = 55/141 (39%), Positives = 81/141 (57%), Gaps = 5/141 (3%)

Query: 629 LQVDKLEIADLIFQLCQFNPPDNITLPQGYSPPPLAITSLYWRGWLLLTMIAAHNPQQFA 688
           L V++LE+ D +  LC ++ P+ I LP GY PP LAI +LYW+ W LL ++A+ NP    
Sbjct: 102 LSVNRLELLDAVLNLCAYHYPNEIQLPAGYVPPKLAIANLYWKAWTLLAIVASLNPSSIG 161

Query: 689 ERAATTYPTL-RALI-EMCITNKPS-IEWGSGTGVDXXXXXXXXXXILQLETHLAAASNA 745
           + + T +P + + LI   C   K S  E   G              IL+ ETHLAAA+  
Sbjct: 162 KSSITCHPGISKTLINRSCRLGKFSHAEMYDGDD-SNKIAQLEKEDILEFETHLAAATTG 220

Query: 746 KLPVTEHNSRLLSQLTTLEPL 766
            + +TE NS LL+QLT+++P+
Sbjct: 221 -VTITESNSLLLAQLTSMDPV 240



 Score = 45.2 bits (102), Expect = 5e-04
 Identities = 18/48 (37%), Positives = 32/48 (66%)

Query: 575 LHRLCCEAPLPQTTLLRLIFIGLAKEVPVAPAEVFELVEQLVRRACAL 622
           L+ L  + P+ + TL+R++ IGL+ E+PV   E  ++ ++L RRA +L
Sbjct: 3   LYSLASDVPVQEDTLMRVVIIGLSAELPVTAPEALDIADRLTRRAASL 50


>SB_12325| Best HMM Match : Arf (HMM E-Value=8.4)
          Length = 154

 Score = 46.0 bits (104), Expect = 3e-04
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 19/150 (12%)

Query: 442 EDYLRPLRALTRECVRAARADSHXXXX---XXXXXXXXXXXXXXXEVRERAFASLADLFC 498
           +DYLR  RAL RE +R+ R + +                       +RER   SL DL  
Sbjct: 4   DDYLRACRALLREVMRSLRYEVNCVVLCRGFMSERTESQFKDLDSPLRERMLISLTDLIA 63

Query: 499 CCCL---------VTASHSKHQP-------EYRQQLCGIQAAALGWLQDTAVPVYRPSRH 542
              +         V A+ ++          ++++ +  IQ  A+ WL      ++  +  
Sbjct: 64  MTTMLSVTPAVKDVAAAFARGDKKDLSVLHQFQKNVSTIQRDAVWWLHTVVPKMFNLTAK 123

Query: 543 DCQLALNKIMFVESADAYSKADNWPPEPER 572
           +    L K++F+E  + YS  DNWP E ++
Sbjct: 124 EYNACLQKVLFLEPVENYSGKDNWPSEADK 153


>SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 43.6 bits (98), Expect = 0.001
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 852 RAACLVECIPRHVAAYIDFLASYAAKTPHKLHTEIVLDLCQVLMERSTVMNSVLGGASGP 911
           +  C VE  P  + AY+ FLA +         ++ +L++ Q+++ER T++N VL  +S  
Sbjct: 230 KMCCQVEIAPLRLQAYLVFLAEHTGGPLEMDFSDTLLEISQLVIERPTILNQVL--SSSN 287

Query: 912 SHPEQHRTLLAL 923
           S  E H+ +L +
Sbjct: 288 SGEETHKAILGM 299



 Score = 40.3 bits (90), Expect = 0.013
 Identities = 19/35 (54%), Positives = 28/35 (80%), Gaps = 1/35 (2%)

Query: 732 ILQLETHLAAASNAKLPVTEHNSRLLSQLTTLEPL 766
           IL+ ETHLAAA+   + +TE NS LL+QLT+++P+
Sbjct: 9   ILEFETHLAAATTG-VTITESNSLLLAQLTSMDPV 42


>SB_52312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 690

 Score = 33.9 bits (74), Expect = 1.1
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 1340 LVTLLAHRASWRTLHTCLTMLLDHP---GDWAPGSVLNLLETLCSSPRLCQGRDK--AAP 1394
            L+  + H++ + TL   L  +L       + +PG+ L+ L T    PRL QGRD+   A 
Sbjct: 134  LLASMTHQSRYDTLQDSLDWILAQDMNNTNLSPGAALDFLWTCFHIPRLWQGRDQKSCAI 193

Query: 1395 KHHQPPDALRLTHRQVGVLVGYIVSE 1420
            K       L L   QV  + G +++E
Sbjct: 194  KAGVEGPVLSLASGQVSHMAGLLLAE 219


>SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 33.1 bits (72), Expect = 2.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 359 LAQLVRMRLKTKQLQLAYQACLREMVSESPALLRSVVTHTVYNELSNV 406
           L QL R RL    L L Y+AC+R  V  +  +  + +   + NEL  +
Sbjct: 152 LIQLKRARLPPSDLSLIYKACIRSAVDHAVPVFHNALPQYLKNELVRI 199


>SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 359 LAQLVRMRLKTKQLQLAYQACLREMVSESPALLRSVVTHTVYNELSNV 406
           L QL R RL    L L Y+AC+R  V  +  +  + +   + NEL  +
Sbjct: 586 LIQLKRARLPPSDLSLFYKACIRSAVDYAVPVFHNALPQYLKNELVRI 633


>SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)
          Length = 642

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 359 LAQLVRMRLKTKQLQLAYQACLREMVSESPALLRSVVTHTVYNELSNV 406
           L QL R RL    L L Y+AC+R  V  +  +  + +   + NEL  +
Sbjct: 504 LIQLKRARLPPSDLSLFYKACIRSAVDYAVPVFHNALPQYLKNELVRI 551


>SB_15386| Best HMM Match : CSE2 (HMM E-Value=0.18)
          Length = 379

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 359 LAQLVRMRLKTKQLQLAYQACLREMVSESPALLRSVVTHTVYNELSNV 406
           L QL R RL    L L Y+AC+R  V  +  +  + +   + NEL  +
Sbjct: 241 LIQLKRARLPPSDLSLFYKACIRSAVDYAVPVFHNALPQYLKNELVRI 288


>SB_45959| Best HMM Match : DUF1091 (HMM E-Value=3.6)
          Length = 360

 Score = 31.5 bits (68), Expect = 6.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 359 LAQLVRMRLKTKQLQLAYQACLREMVSESPALLRSVVTHTVYNELSNV 406
           L QL R RL    L L Y+AC+R  V  +  +  + +   + NEL  +
Sbjct: 168 LIQLKRARLPPTDLSLFYKACIRSAVGYAVPVFHNALPQYLKNELVRI 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,813,289
Number of Sequences: 59808
Number of extensions: 1854026
Number of successful extensions: 3842
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3819
Number of HSP's gapped (non-prelim): 19
length of query: 1690
length of database: 16,821,457
effective HSP length: 92
effective length of query: 1598
effective length of database: 11,319,121
effective search space: 18087955358
effective search space used: 18087955358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 67 (31.1 bits)