GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000766-TA|BGIBMGA000766-PA|undefined
         (1690 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p...    40   0.012
Z92777-4|CAB07170.1|  304|Caenorhabditis elegans Hypothetical pr...    31   7.1  
AF003142-2|AAB54190.1|  412|Caenorhabditis elegans Hypothetical ...    31   7.1  
U41749-8|AAB52489.2|  592|Caenorhabditis elegans Hypothetical pr...    31   9.4  
U41749-7|AAM54198.1|  529|Caenorhabditis elegans Hypothetical pr...    31   9.4  

>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
           protein C06A5.1 protein.
          Length = 1932

 Score = 40.3 bits (90), Expect = 0.012
 Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 8/168 (4%)

Query: 297 DAIGKGFLKLLSATCGFPEIRMVAASRLEAWLHSGKLWKVAQELLAYVCCNCE-PTAPRD 355
           + + K   + L   CG+  IR+  A+RLE W+   K  +   ELL  +  N        D
Sbjct: 302 EVLPKPLFRALCLLCGYEHIRLFIANRLEIWITLQKFHREISELLLVIGSNINAENHELD 361

Query: 356 HEVLAQLVRM---RLKTKQLQLAYQACLREMVSESPALLRSVVTHTVYNEL--SNVRSPN 410
            E++  L+++    +KT+ +   +   ++  + E    +  V+     NE   +  RSP 
Sbjct: 362 KEIIDILLKLNTKNMKTRTVVGPFTQAIK-TICEVSRNVEIVLDSLFINETGPAQNRSPT 420

Query: 411 NXXXXXXXXXXXXXXXXXXXXDTF-QELLVRSEDYLRPLRALTRECVR 457
           N                        +EL    E+ ++ LRA  RE +R
Sbjct: 421 NLQTIYMILQNQPTEATKALAVIISKELFKEKENCVKMLRAFMRELIR 468



 Score = 31.1 bits (67), Expect = 7.1
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 661 PPLAITSLYWRGW--LLLTMIAAHNPQQFAERAATTYPTLRALIEMCITNK 709
           PP+     YW  W  ++L + A      F E   + YP LR LI   +  K
Sbjct: 697 PPICNRKFYWTAWTTIILWIAAGTEIISFFEEIYSEYPILRYLIHCILCQK 747


>Z92777-4|CAB07170.1|  304|Caenorhabditis elegans Hypothetical protein
            C17H1.6 protein.
          Length = 304

 Score = 31.1 bits (67), Expect = 7.1
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 1202 ILRGLVRADPAVLPDLPPRADREHLVALLESATPSTLEAIGNKIIESQDTAVVVDVISLI 1261
            +L  + R +   L +   + DRE  +  LE  TP T   +GN++ + +  AV +  +  I
Sbjct: 96   VLNEMQRTNEIKLGNQQNKVDRELRMHALEQWTPETKVYVGNELKKDRKEAVFIVAVKRI 155

Query: 1262 LERNQE 1267
            +   Q+
Sbjct: 156  VSAGQD 161


>AF003142-2|AAB54190.1|  412|Caenorhabditis elegans Hypothetical
          protein F57C9.7 protein.
          Length = 412

 Score = 31.1 bits (67), Expect = 7.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 41 KPSTSAADRKRDASSYGSQPPSKRSRIGSPAETTGGTSLEVDP 83
          KP+T +A ++ +A S G   P K+SRI           +EV P
Sbjct: 2  KPTTRSASKRANAESSGVNQPEKKSRIPETEIVEDPLEIEVPP 44


>U41749-8|AAB52489.2|  592|Caenorhabditis elegans Hypothetical
           protein F09E10.8a protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 34  AEKRNIHKP--STSAADRKRDASSYGSQPPSKRSR 66
           A K+++H+       AD+K D+  YG+ PP +R+R
Sbjct: 333 ARKQSMHQKFFGGGTADKKTDSGDYGTLPPQQRAR 367


>U41749-7|AAM54198.1|  529|Caenorhabditis elegans Hypothetical
           protein F09E10.8b protein.
          Length = 529

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 34  AEKRNIHKP--STSAADRKRDASSYGSQPPSKRSR 66
           A K+++H+       AD+K D+  YG+ PP +R+R
Sbjct: 270 ARKQSMHQKFFGGGTADKKTDSGDYGTLPPQQRAR 304


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,089,118
Number of Sequences: 27539
Number of extensions: 1370069
Number of successful extensions: 3056
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3052
Number of HSP's gapped (non-prelim): 6
length of query: 1690
length of database: 12,573,161
effective HSP length: 92
effective length of query: 1598
effective length of database: 10,039,573
effective search space: 16043237654
effective search space used: 16043237654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)