GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000765-TA|BGIBMGA000765-PA|IPR000795|Protein synthesis
factor, GTP-binding, IPR005225|Small GTP-binding protein domain,
IPR009022|Elongation factor G, III and V, IPR009000|Translation
factor, IPR004161|Elongation factor Tu, domain 2, IPR000640|Elongation
factor G, C-terminal
         (774 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   3.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   3.4  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    24   4.5  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    23   7.9  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 170 IDLINLEEIIWTQGRGQKFTRRKLTEK-DDGHKWEAAVTD---HRQLVDTLSSIDDEIAE 225
           +DL   +  +W Q R  K  R+ L ++ DDG   ++  +D   + +L D    +DDE+++
Sbjct: 41  LDLTERQVKVWFQNRRMKHKRQTLGKQGDDGDDKDSITSDGGKNGKLSDKF--LDDEMSK 98


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 170 IDLINLEEIIWTQGRGQKFTRRKLTEK-DDGHKWEAAVTD---HRQLVDTLSSIDDEIAE 225
           +DL   +  +W Q R  K  R+ L ++ DDG   ++  +D   + +L D    +DDE+++
Sbjct: 172 LDLTERQVKVWFQNRRMKHKRQTLGKQGDDGDDKDSITSDGGKNGKLSDKF--LDDEMSK 229


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 195 EKDDGHKWEAAVTDHRQLVDTLSSIDDEIAETIINNESLELSARD 239
           + D+GH+W+A V++  + V        E A+ +  N+ LE   +D
Sbjct: 113 DDDEGHEWQADVSE--EAVRARMQDLTEGAKNMTINDDLEKREKD 155


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 120 YRVPRILYLNKMDRNDAFVEACVNSVTEKLQATP 153
           Y VP+ + ++++ +ND   +  ++ + EK + TP
Sbjct: 21  YTVPQNIDIDEILKNDRLTKNYLDCILEKGKCTP 54


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,353
Number of Sequences: 317
Number of extensions: 5284
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 774
length of database: 114,650
effective HSP length: 62
effective length of query: 712
effective length of database: 94,996
effective search space: 67637152
effective search space used: 67637152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)