Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000764-TA|BGIBMGA000764-PA|undefined
         (49 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              19   4.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   6.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   6.1  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 8   ERFGALSFARVLPGNGALRNNRDIQESRAE 37
           E+FG +   R L  NG L   + I   RAE
Sbjct: 78  EQFGLVDDKRELSLNGMLTFFQRIPAYRAE 107


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 18   VLPGNGALRNNRDIQESRAE 37
            V+PGNG   +  ++ E+  +
Sbjct: 1871 VVPGNGDRSDRPELSEAECD 1890


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 18   VLPGNGALRNNRDIQESRAE 37
            V+PGNG   +  ++ E+  +
Sbjct: 1867 VVPGNGDRSDRPELSEAECD 1886


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.130    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,826
Number of Sequences: 429
Number of extensions: 211
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 49
length of database: 140,377
effective HSP length: 30
effective length of query: 19
effective length of database: 127,507
effective search space:  2422633
effective search space used:  2422633
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.1 bits)
S2: 35 (18.2 bits)