Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000763-TA|BGIBMGA000763-PA|undefined
         (105 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    29   0.20 
SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch...    26   1.1  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    25   1.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    24   4.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   4.4  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 28.7 bits (61), Expect = 0.20
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 23  EGRQAVRGGRVVLAGAQPLRHAHLRVLGPSGL 54
           EG+QAV+ GR++L  + PL  A   + G  G+
Sbjct: 78  EGKQAVKTGRLMLGASNPLDSAPGTIRGDYGI 109


>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 32 RVVLAGAQPLRHAHLRVLGPSGLAGRLQQPAGLLVPAARRV 72
          RV     Q    +  + L  SG+A R + P+G  +P A RV
Sbjct: 19 RVARRNGQARNASLAKTLHDSGIAERARSPSGSAIPHAYRV 59


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 29  RGGRVVLAGAQPLRH 43
           R GR++  GAQPL+H
Sbjct: 480 RKGRIIKPGAQPLKH 494


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 67  PAARRVPAAMLGIPAATGSSLVEI 90
           P  + +P  M G P    SSL +I
Sbjct: 501 PTTQSIPLKMAGFPGGVNSSLTDI 524


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 65  LVPAARRVPAAMLGIPAATGSSLVEIPTALPRNNV 99
           L PAA   P A    PAA  +S+ E+P    R N+
Sbjct: 469 LPPAAPAPPPAPAPAPAAPVASIAELPQQDGRANL 503


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 398,389
Number of Sequences: 5004
Number of extensions: 13563
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 5
length of query: 105
length of database: 2,362,478
effective HSP length: 63
effective length of query: 42
effective length of database: 2,047,226
effective search space: 85983492
effective search space used: 85983492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)