Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000763-TA|BGIBMGA000763-PA|undefined
         (105 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.74 
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    26   5.2  
SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)              25   9.1  
SB_39495| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.1  
SB_45061| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.1  
SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59)                   25   9.1  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.1  

>SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 15  TGRSSRAGEGRQAVRGGRVVLAGAQPLRHAHLRVLGPSGLAGRLQQPAGLLVPAARRVPA 74
           T  ++  G G Q VRG R     A P   +   V GP G  GR     GL  P     P 
Sbjct: 459 TSSATLGGRGPQGVRGDRGPPGPAGPPGPSGRYVPGPPGPPGR--TVIGLPGPPGPAGPR 516

Query: 75  AMLGIPAAT 83
            + G+P A+
Sbjct: 517 GIPGLPGAS 525


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 48  VLGPSGLAGRLQQPAGLLVPAARRVPAAMLGIPAATG 84
           +LGP G  G +  P GL  P   ++P    G+P A G
Sbjct: 269 ILGPPGPPGDMGPP-GLPGPPGPQMPPGPPGLPGAPG 304



 Score = 25.4 bits (53), Expect = 9.1
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 22  GEGRQAVRGGRVVLAGAQPLRHAHLRVLGPSGLAGRLQQPAGLLVPAARRVPAAMLGIPA 81
           G G Q   G    + G   L   +   LGP G  G +  P GL  P   ++P    G+P 
Sbjct: 159 GPGLQGNHGNPAGIQGPNGLPGPN-GPLGPPGPPGDMGPP-GLPGPQGPQMPPGPPGLPG 216

Query: 82  ATG 84
           A G
Sbjct: 217 APG 219


>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
          Length = 1596

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 14  ATGRSSRAGEGRQAVRGGRVVLAG 37
           ATG +S AGE  +A + G+   AG
Sbjct: 163 ATGEASEAGEASEASKAGKASEAG 186


>SB_39495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 49  LGPSGLAGRLQQPAGLLVPAARRVPAAMLGIPAATGSSLVEIPTALP 95
           LG       L QP+    P   R  A  +  PA+T + L+ +P +LP
Sbjct: 83  LGALSSVRNLSQPSPAKRPRPSRSKANKIN-PASTTAGLIRVPGSLP 128


>SB_45061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 49  LGPSGLAGRLQQPAGLLVPAARRVPAAMLGIPAATGSSLVEIPTALP 95
           LG       L QP+    P   R  A  +  PA+T + L+ +P +LP
Sbjct: 83  LGALSSVRNLSQPSPAKRPRPSRSKANKIN-PASTTAGLIRVPGSLP 128


>SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59)
          Length = 483

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 58  LQQPAGLLVPAARRVPAAMLGIPAATGSSLVEI 90
           L+ PA L++  AR  PAA++     T S+   +
Sbjct: 384 LETPAALIIIRARETPAALIDYSYHTASTTTTV 416


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 37   GAQPLRHAH---LRVLGPSGLAGRLQQPAGLLVPAARRVPAAMLGIPAA 82
            G +P R +    LR   PSG   +    +GL VP+ RR  +  L  P A
Sbjct: 6222 GGKPTRESSGTSLRGKPPSGARPKTSTSSGLTVPSVRREKSGELLSPRA 6270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,521
Number of Sequences: 59808
Number of extensions: 114470
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 12
length of query: 105
length of database: 16,821,457
effective HSP length: 72
effective length of query: 33
effective length of database: 12,515,281
effective search space: 413004273
effective search space used: 413004273
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)