Silkworm BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000762-TA|BGIBMGA000762-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
         (112 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF269154-1|AAF91399.1|   76|Anopheles gambiae transcription fact...    37   2e-04
AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic pr...    36   3e-04
AF269156-1|AAF91401.1|   52|Anopheles gambiae transcription fact...    36   5e-04
AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox transcrip...    32   0.004
AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeo...    31   0.007
AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax home...    31   0.007
AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax home...    31   0.007
DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.     31   0.010
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    31   0.010
AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    31   0.010
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    31   0.013
AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative transcri...    30   0.017
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    30   0.017
AF269155-1|AAF91400.1|   59|Anopheles gambiae transcription fact...    30   0.023
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    24   1.1  
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    23   2.0  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   2.6  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    22   6.0  

>AF269154-1|AAF91399.1|   76|Anopheles gambiae transcription
          factor proboscipedia protein.
          Length = 76

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 23 RKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
          R+ R  +T  Q+ ELE+ F   KYL  P R  +A+ + LT  Q
Sbjct: 25 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQ 67


>AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic
          protein protein.
          Length = 109

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 26 RVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
          R  FT  Q+ ELE+ F   KYL+   R  +A+ +HL  TQ
Sbjct: 57 RTNFTNKQLTELEKEFHFNKYLTRARRIEIANALHLNETQ 96


>AF269156-1|AAF91401.1|   52|Anopheles gambiae transcription
          factor zen protein.
          Length = 52

 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 23 RKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
          ++ R  FT +Q+ ELE+ F   +YL  P R  L   + LT  Q
Sbjct: 1  KRSRTAFTSSQLVELEKEFHSNRYLCRPRRIELTRKLALTERQ 43


>AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox
          transcription factor protein.
          Length = 185

 Score = 32.3 bits (70), Expect = 0.004
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 18 PLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
          P    ++ R  +++ Q  ELE+ F   +YL+   R  +AS++ LT  Q
Sbjct: 2  PKESSKRTRQSYSRHQTIELEKEFHFNRYLNRRRRIEIASMLKLTERQ 49


>AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeotic
           protein protein.
          Length = 324

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 21  QRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
           +R++ R  +T+ Q  ELE+ F   +YL+   R  +A  + LT  Q
Sbjct: 243 ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQ 287


>AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax
           homeotic protein IVa protein.
          Length = 310

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 22  RRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
           RR+ R  +T+ Q  ELE+ F    YL+   R  +A  + LT  Q
Sbjct: 219 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQ 262


>AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax
           homeotic protein IIa protein.
          Length = 327

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 22  RRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
           RR+ R  +T+ Q  ELE+ F    YL+   R  +A  + LT  Q
Sbjct: 236 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQ 279


>DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.
          Length = 377

 Score = 31.1 bits (67), Expect = 0.010
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 23  RKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
           RK+R  +++ Q  ELE+ F    Y+S  +R  LA  ++LT  Q
Sbjct: 271 RKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLNLTERQ 313


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 31.1 bits (67), Expect = 0.010
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 23  RKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
           ++ R  FT  Q+ ELER F    YL+   R  +A+ + L+  Q
Sbjct: 197 KRIRTAFTSTQLLELEREFAGNMYLTRLRRIEIATRLRLSEKQ 239


>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeotic
           protein protein.
          Length = 308

 Score = 31.1 bits (67), Expect = 0.010
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 22  RRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ----FHNGPVDNLRRV 77
           RR+ R  +T+ Q  ELE+ F    YL+   R  +A  + LT  Q    F N  +   + +
Sbjct: 138 RRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 197

Query: 78  N-INFINSPCNPDKGPQTSMNN 98
             +  IN     ++  Q  M N
Sbjct: 198 RAVKEINEQARREREEQDKMKN 219


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 21  QRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
           + +++R  +T+ Q  ELE+ F   +YL+   R  +A  + LT  Q
Sbjct: 279 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQ 323


>AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative
           transcription factor protein.
          Length = 319

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 3   GLAACAGPDAKPMQF-----PLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLAS 57
           GL AC G       F      + ++R+ R +FT+ Q+ +LE  F +  Y     RE LA 
Sbjct: 163 GLVACNGNFRPRYPFLNADSHIKRKRRHRTIFTEEQLEQLEATFDKTHYPDVLLREKLAI 222

Query: 58  LIHL 61
            + L
Sbjct: 223 KVDL 226


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 24  KRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
           K RV++T  Q  ELE+ F   +Y++   +  LA  + L+  Q
Sbjct: 217 KYRVVYTDQQRLELEKEFHYTRYITIRRKAELAQNLQLSERQ 258


>AF269155-1|AAF91400.1|   59|Anopheles gambiae transcription
          factor Deformed protein.
          Length = 59

 Score = 29.9 bits (64), Expect = 0.023
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 23 RKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
          +++R  +T+ Q+ ELE+ F    YL+   R  +A  + L+  Q
Sbjct: 2  KRQRTAYTRHQILELEKEFHYNXYLTRRRRIEIAHTLVLSERQ 44


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/50 (22%), Positives = 27/50 (54%)

Query: 21  QRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQFHNGP 70
           Q+++++    Q Q  +  ++  QQ+ L  P+++   +++   P+Q H  P
Sbjct: 201 QQQQQQQRQQQQQCQQQRQQQPQQQQLQQPQQQLWTTVVRGRPSQRHRQP 250


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 33  QVYELERRFKQQKYLSAPEREHLASLIHLTPTQFHNGPVDNLRRVNINFINSPCNPDKGP 92
           +V EL       K+L AP  +HL SLI      + + P   L ++N       CN D  P
Sbjct: 544 RVEELFTPNTYNKFLVAPGGDHLISLI--DEISYVSPPSPMLSQINDIPPEQFCNGDNRP 601


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 22  RRKRRVLFTQAQVYELERRFKQQKYLSAPER 52
           +R R + F    +Y    RF+ ++YLS  +R
Sbjct: 431 QRSRSIYFDTHSLYCSYNRFRYRRYLSKIQR 461


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 85  PCNPDKGPQTSMNNLHFEGVNTIYGD 110
           P N  +G  + ++NL    +  IYGD
Sbjct: 639 PSNSGRGFMSILSNLTAVKIRAIYGD 664


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,947
Number of Sequences: 2123
Number of extensions: 5285
Number of successful extensions: 19
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 18
length of query: 112
length of database: 516,269
effective HSP length: 56
effective length of query: 56
effective length of database: 397,381
effective search space: 22253336
effective search space used: 22253336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)