Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000762-TA|BGIBMGA000762-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
(112 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 32 0.019
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 26 1.2
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 25 2.8
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 24 5.0
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 24 5.0
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 24 5.0
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 24 6.6
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 24 6.6
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 23 8.7
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 23 8.7
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 23 8.7
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 32.3 bits (70), Expect = 0.019
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 24 KRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
K RV Q ++Y+LE +Q + +R + A+++HL P Q
Sbjct: 732 KVRVYIVQNRIYKLEEALRQGESKMTVQRRNAANILHLEPIQ 773
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 1.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 4 LAACAGPDAKPMQFPLAQRRKRRVLFTQAQVY 35
L CA P ++ PL +R +R LFT+ ++
Sbjct: 556 LVDCAAPPLSVIREPLHYQRSKRKLFTRLYIW 587
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 2.8
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 53 EHLASLIHLTPTQFHNGPVDNLRRVNINFINSPCNPDKGPQTSMNNL 99
EHL+ +H T T+ H D+L +N I D+GP T+M+++
Sbjct: 223 EHLSQSLHATDTETHTF-TDSLVVLNEVVI------DRGPNTAMSDI 262
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.2 bits (50), Expect = 5.0
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 24 KRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQFH 67
K+R + + + Y+ E++ + ++Y S E+ A L++L FH
Sbjct: 198 KKRGINAELRQYQ-EQKTEAERYQSQKEKRDSAQLVYLLWKLFH 240
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 24.2 bits (50), Expect = 5.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 52 REHLASLIHLTPTQFHNGPVDNLRR 76
REHL S+ H+ +H P + RR
Sbjct: 828 REHLLSIDHVQRLLYHQVPAEEGRR 852
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 24.2 bits (50), Expect = 5.0
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Query: 39 RRFKQQKYLSAPERE----HLASLIH 60
RRF ++ Y+ PE+E HL+ L+H
Sbjct: 544 RRFVKRTYIPLPEKETRYKHLSHLLH 569
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 23.8 bits (49), Expect = 6.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 78 NINFINSPCNPDKGPQTSMNNLHFEG 103
NI+ ++P D+ P S N++H G
Sbjct: 217 NISSSSAPLASDQSPTVSSNHIHASG 242
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 23.8 bits (49), Expect = 6.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 67 HNGPVDNLRRVNINFINSPCNP 88
+N P + +VN+ F+ SP NP
Sbjct: 41 YNVPKCSKNQVNVRFLASPINP 62
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 23.4 bits (48), Expect = 8.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 27 VLFTQAQVYELERRFKQQKYLSAPEREHLAS 57
VLF A+ Y++ R +Q+ Y S ++ ++S
Sbjct: 167 VLFLLARYYQIVMRIRQRYYRSPTYQQSMSS 197
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 23.4 bits (48), Expect = 8.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 33 QVYELERRFKQQKYLSAPEREHLASL 58
QVY L K + YLS EH+ SL
Sbjct: 218 QVYSLLGMNKLKLYLSTRPEEHIGSL 243
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 23.4 bits (48), Expect = 8.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 42 KQQKYLSAPEREHLASLIHLTPTQFHNGPVDNLRR 76
K + L PE+ H A L ++P+ + NLRR
Sbjct: 232 KSEGNLLFPEKPHSAQLPLVSPSTSESSMFTNLRR 266
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.137 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,048
Number of Sequences: 5004
Number of extensions: 21432
Number of successful extensions: 49
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 11
length of query: 112
length of database: 2,362,478
effective HSP length: 64
effective length of query: 48
effective length of database: 2,042,222
effective search space: 98026656
effective search space used: 98026656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)
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