Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000762-TA|BGIBMGA000762-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
(112 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160 34 0.022
08_01_0574 + 5103466-5103534,5104526-5104806,5104959-5105127 32 0.12
09_03_0144 - 12728697-12729238,12729312-12729432 31 0.27
07_03_1043 + 23506148-23506226,23506344-23506693,23506782-23507075 29 0.63
04_04_1231 - 31934745-31935125,31935230-31935325,31936215-319362... 29 0.63
04_04_0841 - 28574497-28574883,28575815-28576188,28576262-285764... 29 1.1
08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622 28 1.5
02_05_0618 + 30400338-30400452,30400553-30400692,30400805-304010... 28 1.5
01_07_0043 + 40699334-40700482 27 2.6
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478... 27 3.4
01_01_1139 - 9024609-9024708,9024832-9024910,9025083-9025252,902... 27 4.5
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 26 5.9
08_02_0302 + 15546969-15547511,15549514-15549750,15550046-155501... 26 5.9
03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820 26 7.8
03_01_0039 - 348800-348912,349201-349279,349513-349687,350126-35... 26 7.8
>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
Length = 749
Score = 34.3 bits (75), Expect = 0.022
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 2 GGLAACAGPDAKPMQFPLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHL 61
GG +G D P Q P R+KR TQ Q+ ELE FK+ + +R+ L+ + L
Sbjct: 71 GGGGGGSGGDQDPNQRP---RKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGL 127
Query: 62 TPTQ 65
P Q
Sbjct: 128 EPLQ 131
>08_01_0574 + 5103466-5103534,5104526-5104806,5104959-5105127
Length = 172
Score = 31.9 bits (69), Expect = 0.12
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 8 AGPDAKPMQFPLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
+G D P Q P R+KR TQ Q+ E+E FK+ + +R+ L+ + L P Q
Sbjct: 89 SGDDQDPNQRP---RKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQ 143
>09_03_0144 - 12728697-12729238,12729312-12729432
Length = 220
Score = 30.7 bits (66), Expect = 0.27
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 20 AQRRKRRVLFTQAQVYELERRFKQQKYLSAPERE-HLASLIHLTPTQ 65
A RKRR+ T QV LER F+++K PER+ LA + + P Q
Sbjct: 89 AAARKRRL--TAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQ 133
>07_03_1043 + 23506148-23506226,23506344-23506693,23506782-23507075
Length = 240
Score = 29.5 bits (63), Expect = 0.63
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 5 AACAGPDAKPMQFPLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPT 64
A C G + +KRR+ + QV LE F++++ L + HLAS + L P
Sbjct: 44 ARCVGGGGGGGEVDGGDPKKRRL--SDEQVEMLELSFREERKLETGRKVHLASELGLDPK 101
Query: 65 Q 65
Q
Sbjct: 102 Q 102
>04_04_1231 -
31934745-31935125,31935230-31935325,31936215-31936277,
31936393-31936593,31936738-31936839,31936972-31937430,
31937524-31937712,31938325-31938442,31939033-31939307,
31939853-31939930
Length = 653
Score = 29.5 bits (63), Expect = 0.63
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 11 DAKPMQFPLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
D P Q P R+KR TQ Q+ E+E FK+ + +R+ L+ + L P Q
Sbjct: 93 DQDPNQRP---RKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQ 144
>04_04_0841 -
28574497-28574883,28575815-28576188,28576262-28576439,
28576816-28576896,28578134-28578361,28578460-28578579,
28578646-28579353,28579471-28579588,28579686-28579978,
28580101-28580169
Length = 851
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 21 QRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
+R+KR T Q+ ELE FK+ + +R L+ + L P Q
Sbjct: 103 KRKKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQ 147
>08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622
Length = 349
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 20 AQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
A +KRR+ T QV LER F+++ L + LA + + P Q
Sbjct: 83 APEKKRRL--TAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQ 126
>02_05_0618 +
30400338-30400452,30400553-30400692,30400805-30401044,
30401157-30401693
Length = 343
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 23 RKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
+KRR+ T QV+ LER F+++ L + LA + L P Q
Sbjct: 77 KKRRL--TPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQ 117
>01_07_0043 + 40699334-40700482
Length = 382
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 37 LERRFKQQKYLSAPEREHLASLIHLTPTQFHNGPVDNLRRVNINFINSP 85
++ RF K L + H +L + TP F NG + RV N I P
Sbjct: 12 MDNRFPVSKSLRCIDLTHHCNLFNATPPNFFNGSKSTIIRVE-NRIQLP 59
>02_05_0890 -
32546918-32547088,32547224-32547334,32547705-32547884,
32547960-32548064,32548333-32548431,32548524-32548679,
32548772-32548850,32549213-32549278,32549382-32549536,
32549675-32550034,32550150-32550305,32550779-32550856,
32551471-32551812
Length = 685
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 7 CAGPDAKPMQFPLAQRRKRRVL--FTQAQVYELERR 40
C+ P + P+Q RKRRV F + Q Y L+RR
Sbjct: 289 CSDPPSAPIQSGNVIARKRRVQAQFNELQEYYLQRR 324
>01_01_1139 -
9024609-9024708,9024832-9024910,9025083-9025252,
9025339-9025451,9025518-9025586,9025867-9025944,
9026022-9026084,9026590-9026670,9027166-9027222,
9027352-9027705
Length = 387
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 34 VYELERRFKQQKYLSAPEREHLASLIHLTPTQFHNGPVDNLRRVNINFINSPCN 87
V++L ++ +KY S PE +L+ T P+D +RR + SP N
Sbjct: 269 VFDLMKKSVPEKYKSRPETSLATALLSATFATLMCYPLDTVRR-QMQMKGSPYN 321
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 61 LTPTQFHNGPVDNLRRVNINFINSPCNPDKGPQT 94
+ P FH GPV + ++N+ I + C+ ++ T
Sbjct: 146 IPPGLFHGGPVQIVAKINLTKILTKCSLERYQMT 179
>08_02_0302 +
15546969-15547511,15549514-15549750,15550046-15550188,
15550616-15550706,15550791-15550931
Length = 384
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 53 EHLASLIHLTPTQFHNGPVD 72
+HL+ + H+ TQFH+ P D
Sbjct: 313 DHLSKIEHVPSTQFHDRPSD 332
>03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820
Length = 292
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 24 KRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
++++ T+ Q LE RF++ L+ ++ LA ++L P Q
Sbjct: 126 RKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQ 167
>03_01_0039 -
348800-348912,349201-349279,349513-349687,350126-350232,
350294-350374,350783-351082,351178-351230,351357-351494,
351767-351917,352602-352809,352881-352939
Length = 487
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 18 PLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
P+A R L A+V +L+ + +Q K +AP++ +S + P Q
Sbjct: 361 PVAAGRLSAHLVYPAKVTDLKPKVEQGKVKAAPQKPFASSYYRVAPKQ 408
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.137 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,593,368
Number of Sequences: 37544
Number of extensions: 133453
Number of successful extensions: 313
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 15
length of query: 112
length of database: 14,793,348
effective HSP length: 73
effective length of query: 39
effective length of database: 12,052,636
effective search space: 470052804
effective search space used: 470052804
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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