Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000762-TA|BGIBMGA000762-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
(112 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04890.1 68417.m00712 homeobox-leucine zipper protein protode... 30 0.31
At1g05230.2 68414.m00529 homeobox-leucine zipper family protein ... 30 0.41
At1g05230.1 68414.m00528 homeobox-leucine zipper family protein ... 30 0.41
At4g17710.1 68417.m02645 homeobox-leucine zipper family protein ... 29 0.54
At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) / ovule... 29 0.71
At1g31460.1 68414.m03852 expressed protein 29 0.71
At5g46880.1 68418.m05777 homeobox-leucine zipper family protein ... 29 0.94
At3g61150.1 68416.m06843 homeobox-leucine zipper family protein ... 28 1.2
At3g01470.1 68416.m00071 homeobox-leucine zipper protein 5 (HAT5... 26 5.0
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to... 26 6.6
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 26 6.6
At1g80540.1 68414.m09441 expressed protein ; expression supporte... 26 6.6
At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-... 26 6.6
At2g22800.1 68415.m02706 homeobox-leucine zipper protein 9 (HAT9... 25 8.8
At1g73360.1 68414.m08491 homeobox-leucine zipper family protein ... 25 8.8
>At4g04890.1 68417.m00712 homeobox-leucine zipper protein
protodermal factor 2 (PDF2) identical to GP|14276060|
protodermal factor2 (GI:14276060)
Length = 743
Score = 30.3 bits (65), Expect = 0.31
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 10 PDAKPMQFPLAQ--RRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
P + +Q P + ++KR TQ Q+ ELE FK+ + +R+ L+ ++L P Q
Sbjct: 48 PSGEELQDPSQRPNKKKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRDLNLEPLQ 105
>At1g05230.2 68414.m00529 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
homeobox 1 (GP:12002853) {Picea abies}; Strong
similarity to Phalaenopsis homeobox protein (gb|U34743)
Length = 721
Score = 29.9 bits (64), Expect = 0.41
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 16 QFPLAQRRKRRV-LFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
Q PL +K+R TQ Q+ E+E FK+ + +R+ L+ ++L P Q
Sbjct: 57 QDPLHPNKKKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELNLEPLQ 107
>At1g05230.1 68414.m00528 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
homeobox 1 (GP:12002853) {Picea abies}; Strong
similarity to Phalaenopsis homeobox protein (gb|U34743)
Length = 721
Score = 29.9 bits (64), Expect = 0.41
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 16 QFPLAQRRKRRV-LFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
Q PL +K+R TQ Q+ E+E FK+ + +R+ L+ ++L P Q
Sbjct: 57 QDPLHPNKKKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELNLEPLQ 107
>At4g17710.1 68417.m02645 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein (GI:8920425) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 709
Score = 29.5 bits (63), Expect = 0.54
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 16 QFPLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
Q P A ++KR T +Q+ ++E FK+ + R L+ + L+P Q
Sbjct: 82 QEPPAAKKKRYHRHTASQIQQMEALFKENAHPDTKTRLRLSKKLGLSPIQ 131
>At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) /
ovule-specific homeobox protein A20 nearly identical to
meristem L1 layer homeobox protein A20 (AtML1)
[Arabidopsis thaliana] GI:1881536, protodermal factor2
(PDF2) [Arabidopsis thaliana] GI:14276060
Length = 762
Score = 29.1 bits (62), Expect = 0.71
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 14 PMQFPLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
P Q P ++R R TQ Q+ ELE FK+ + +R+ L+ + L P Q
Sbjct: 56 PNQRPNKKKRYHR--HTQRQIQELESFFKECPHPDDKQRKELSRELSLEPLQ 105
>At1g31460.1 68414.m03852 expressed protein
Length = 301
Score = 29.1 bits (62), Expect = 0.71
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 36 ELERRFKQQKYL-SAPEREHLASLIHLTPTQFHNGPVDNLRRVNINFINSPCNPDK 90
+LE RF++ K L +AP E ++S + + P+ + + VN+NF + NP K
Sbjct: 47 DLESRFRRLKSLPAAPRHEPVSS----SSSMNRQKPLSHSKSVNVNFSGNRRNPGK 98
>At5g46880.1 68418.m05777 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein GI:8920425 from [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 820
Score = 28.7 bits (61), Expect = 0.94
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 18 PLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
P ++KR T Q+ E+E FK+ + +R+ L++ + L P Q
Sbjct: 107 PPPAKKKRYHRHTNRQIQEMEALFKENPHPDDKQRKRLSAELGLKPRQ 154
>At3g61150.1 68416.m06843 homeobox-leucine zipper family protein /
homeodomain GLABRA2 like protein 1 (HD-GL2-1) similar to
Anthocyaninless2 (ANL2) (GP:5702094) Arabidopsis
thaliana, EMBL:AF077335
Length = 808
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 6 ACAGPDAKPMQFPLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
A +G D PL +++KR T Q+ +LE FK+ + +R L+ ++L P Q
Sbjct: 95 AVSGDDLDTSDRPL-KKKKRYHRHTPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQ 153
>At3g01470.1 68416.m00071 homeobox-leucine zipper protein 5 (HAT5) /
HD-ZIP protein 5 / HD-ZIP protein (HB-1) identical to
homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5)
(HD-ZIP protein ATHB-1) GB:Q02283 [Arabidopsis thaliana]
Length = 272
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 23 RKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
+KRR+ T QV+ LE+ F+ + L + LA + L P Q
Sbjct: 68 KKRRL--TTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQ 108
>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
myosin heavy chain [Arabidopsis thaliana]
gi|602328|emb|CAA84067.
Length = 1242
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 19 LAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLI 59
L +RR++R+ T+ +VY+L+ + Y + + L S++
Sbjct: 1116 LGERRRKRLEETERRVYQLQDSLNRLLYSMSDQFSQLKSIL 1156
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 25 RRVLFTQAQVYELERRFKQQKYLSAPEREHLASL-IHLTPTQFHNGPVDNLRR 76
R+ L+ Q+YE+ER+ ++ ++H S+ + L + VDN+R+
Sbjct: 640 RKRLYLARQIYEIERKGSRENADRTWLKKHAESMELELDDEESEEERVDNVRQ 692
>At1g80540.1 68414.m09441 expressed protein ; expression supported
by MPSS
Length = 481
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 63 PTQFHNGPVDNLRRVNINFINSPCNPDKGPQTSMNNL 99
P N VD N ++I PCNP + NNL
Sbjct: 76 PLNHFNIYVDGWNVTNSHYIAPPCNPSLNYLRTSNNL 112
>At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-10)
/ HD-ZIP transcription factor 10 / homeobox protein
(GLABRA2) identical to homeobox protein (GLABRA2)
(homeobox-leucine zipper protein ATHB-10) (HD-ZIP
protein ATHB-10) GB:P46607 [Arabidopsis thaliana]
Length = 747
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 21 QRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
++RK+ T Q+ +E FK+ + +R+ L+ + L P Q
Sbjct: 100 RKRKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQ 144
>At2g22800.1 68415.m02706 homeobox-leucine zipper protein 9 (HAT9) /
HD-ZIP protein 9 identical to GB:U09341
Length = 274
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 24 KRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
++++ T+ Q LE FK L+ +++ LA ++L P Q
Sbjct: 112 RKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQ 153
>At1g73360.1 68414.m08491 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein
protodermal factor2 (GI:14276060) [Arabidopsis
thaliana]; similar to homeobox protein GI:1173621 from
[ Phalaenopsis sp.]
Length = 722
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 21 QRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQ 65
+++KR T Q+ LE FK+ + +R L+ + L P Q
Sbjct: 31 RKKKRYHRHTAQQIQRLESSFKECPHPDEKQRNQLSRELGLAPRQ 75
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.137 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,774
Number of Sequences: 28952
Number of extensions: 103110
Number of successful extensions: 232
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 15
length of query: 112
length of database: 12,070,560
effective HSP length: 72
effective length of query: 40
effective length of database: 9,986,016
effective search space: 399440640
effective search space used: 399440640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -