Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000761-TA|BGIBMGA000761-PA|undefined
         (281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.75 
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   9.2  

>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 131 GGAPVQGYGCAPTDLPHYGDMRGAGWYPASNDPRFANNKNLDKEQTKLFILHDCLPDVGI 190
           G   +Q  GC  +D  HYGD    G +P          + L K  +    L D  PDV  
Sbjct: 242 GPVSIQFKGCYVSDYDHYGDTEAFGSHPDW-------QRQLSKFASVQDRLRDWKPDVAE 294

Query: 191 EPTTLSVTVRVVNYCTTESLQLSRLTAIEARRFPINCARYIR 232
           +   LS    V++    +  ++ + T + A  F ++ + Y+R
Sbjct: 295 KLMHLSCL--VISMLDVDGFRIDKATQMTA-DFIVDWSMYVR 333


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 156 WYPASNDPRFANN 168
           WY  SNDP+ +NN
Sbjct: 321 WYSLSNDPKVSNN 333


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,163,466
Number of Sequences: 5004
Number of extensions: 45145
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 2
length of query: 281
length of database: 2,362,478
effective HSP length: 72
effective length of query: 209
effective length of database: 2,002,190
effective search space: 418457710
effective search space used: 418457710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)