GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000761-TA|BGIBMGA000761-PA|undefined
         (281 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0050 + 3600911-3601261,3603341-3604195                           30   1.8  

>09_02_0050 + 3600911-3601261,3603341-3604195
          Length = 401

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/73 (23%), Positives = 30/73 (41%)

Query: 50  FSVTDILSPIEEYRKLELANNPPSPYRAHRTAYDVKATDDFIDYAQLSVDRXXXXXXXXX 109
           ++VT  L P E Y+ +E     P P + H++A D  + D   D   +   +         
Sbjct: 324 YAVTKFLKPKELYKVVEAPAPAPEPSKKHKSAADDSSDDSSDDSGDVKAHKGAAAPAPLA 383

Query: 110 XPLGPAASCGMTA 122
             +  AA+  + A
Sbjct: 384 RWVTAAAAAAVAA 396


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.138    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,748,419
Number of Sequences: 37544
Number of extensions: 306707
Number of successful extensions: 660
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 659
Number of HSP's gapped (non-prelim): 1
length of query: 281
length of database: 14,793,348
effective HSP length: 81
effective length of query: 200
effective length of database: 11,752,284
effective search space: 2350456800
effective search space used: 2350456800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)