Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000761-TA|BGIBMGA000761-PA|undefined
(281 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14312| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.086
SB_9756| Best HMM Match : Cadherin (HMM E-Value=0) 31 1.4
SB_29408| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13) 30 2.4
SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.2
SB_3045| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59) 28 7.5
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.5
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_22178| Best HMM Match : Involucrin2 (HMM E-Value=2.6) 28 7.5
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
>SB_14312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 34.7 bits (76), Expect = 0.086
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 124 PYAVPLYGGAPVQGYGCAPTDLPHYGDM 151
P +P YGG P QGYG AP D+ YG M
Sbjct: 13 PGMMPPYGGHPPQGYGMAP-DMTGYGQM 39
>SB_9756| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 608
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 168 NKNLDKEQTKLFILHDCLPDVGIEPTTLSVTVRVV 202
+++LD E+TK ++ D G+EP + S +VRV+
Sbjct: 549 SESLDFEETKEYVFGIIASDSGVEPKSSSTSVRVI 583
>SB_29408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 228 ARYIRYNVFTGHPRGDA--QYLYYAPVFIHAQFARQFILYWQHSQLGRWVLITI 279
++Y RY+ T H RG A QY Y V +HA + SQ R+ +T+
Sbjct: 260 SQYTRYDTVTVHTRGMARSQYTRYGTVTVHAVWYGHSTRGMARSQYTRYGTVTV 313
>SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13)
Length = 633
Score = 29.9 bits (64), Expect = 2.4
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 111 PLGPAASCGMTANPYAVPLYGGAPVQGYGCAPTDLPHYGDMRGAGWYPASNDPRFANNKN 170
P PA G A A P YGGAP GYG P P R +P+ + +
Sbjct: 264 PPPPAYGGGPPAYGGA-PNYGGAPPMGYGAQPMQAPQMQTYRN---HPSGGNVIMVYGLD 319
Query: 171 LDKEQ-TKLFILHDCLPDV 188
DK +LF L C +V
Sbjct: 320 KDKMNCDRLFNLLCCYGNV 338
>SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1307
Score = 29.9 bits (64), Expect = 2.4
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 11/129 (8%)
Query: 131 GGAPVQGYGCAPTDLPHYGDMRGAGWYPASNDPRFANNKNLDKEQTKLF-ILHD-----C 184
GGA QG PT +PH + N+ N KN+D + L+ +L D C
Sbjct: 1087 GGASYQGENLYPTGMPHLNSIEVK---VDGNETPITNLKNVDGQDVDLYHLLFDNVCCEC 1143
Query: 185 LPDVGIEPTTLS-VTVRVVNYCTTESLQLSRLTAIEARRFPINCARYIRYNVFTGHPRGD 243
+ V ++P VT+ + T+ + L ++ AR + Y++ G +
Sbjct: 1144 IIRV-LQPQYKGVVTLELTFSQATDKVYTVVLHGEFNNNMEVDPARDVMYDIQGGFRAAE 1202
Query: 244 AQYLYYAPV 252
Q+ APV
Sbjct: 1203 CQHPEVAPV 1211
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 168 NKNLDKEQTKLFILHDCLPDVGIEPTTLSVTVRVV 202
+++LD E+TK ++ D G+EP + S +V+V+
Sbjct: 1251 SESLDFEETKEYVFGIIASDSGVEPKSSSTSVKVI 1285
>SB_3045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 228 ARYIRYNVFTGHPRGDA--QYLYYAPVFIHAQFARQFILYWQHSQLGRWVLITI 279
A+Y RY T H RG A QY Y + +HA + SQ R+ IT+
Sbjct: 137 AQYTRYGTVTVHIRGMARSQYTRYGTITVHAVWYGHSTRGMIRSQYTRYDTITV 190
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 228 ARYIRYNVFTGHPRG--DAQYLYYAPVFIH------AQFARQFI--LYWQHSQLGRWVLI 277
+RY RY T H RG +QY Y V +H +Q+ ++I +++ HS R+ +
Sbjct: 533 SRYTRYGTVTVHTRGMVRSQYTRYDTVTVHTRGMVRSQYIHEYIHAVWYGHSTYTRYGTV 592
Query: 278 TI 279
T+
Sbjct: 593 TV 594
>SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1551
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 113 GPAASCGMTANPYAVPLYGGAPVQGYGCAPTDLPH 147
GP A+ G+T N A YG P Q CA H
Sbjct: 691 GPVANHGITINESAWSAYGAPPTQELPCAHAGSRH 725
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
Query: 128 PLYGGAPVQGYG-----CAPTDLPHY 148
PLYGGAP G C PTD P Y
Sbjct: 765 PLYGGAPCPGRNIQVSPCNPTDCPSY 790
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 112 LGPAASCGMTANPYAVPLYGGAPVQGYG 139
+G GMT+NP P G P QGYG
Sbjct: 118 MGGEVPDGMTSNPMGGPQGGYPPYQGYG 145
>SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)
Length = 421
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 113 GPAASCGMTANPYAVPLYGGAPVQGYGCA 141
GP A+ G+T N A YG P Q CA
Sbjct: 347 GPVANHGITINESAWSAYGAPPTQELPCA 375
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 113 GPAASCGMTANPYAVPLYGGAPVQGYGCA 141
GP A+ G+T N A YG P Q CA
Sbjct: 1190 GPVANHGITINESAWSAYGAPPTQELPCA 1218
>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 194 TLSVTVRVVNYCTTESLQLSRLTAIEARRFPINCARYIRYNVFTGHPRGDAQYLYYAPVF 253
TL Y TT + + S + ++ N RY Y + T H ++ +Y P
Sbjct: 405 TLHAATHTTRY-TTHNTRFSHCKLL--KQHATNTTRYSHYMLLTQHATRTTRHAHYTPRI 461
Query: 254 IHAQFARQFILY 265
HA ++ Y
Sbjct: 462 PHATHTTRYAHY 473
>SB_22178| Best HMM Match : Involucrin2 (HMM E-Value=2.6)
Length = 311
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 113 GPAASCGMTANPYAVPLYGGAPVQGYGCA 141
GP A+ G+T N A YG P Q CA
Sbjct: 239 GPVANHGITINESAWSAYGAPPTQELPCA 267
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 113 GPAASCGMTANPYAVPLYGGAPVQGYGCA 141
GP A+ G+T N A YG P Q CA
Sbjct: 1415 GPVANHGITINESAWSAYGAPPTQELPCA 1443
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.138 0.440
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,719,841
Number of Sequences: 59808
Number of extensions: 343022
Number of successful extensions: 610
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 22
length of query: 281
length of database: 16,821,457
effective HSP length: 81
effective length of query: 200
effective length of database: 11,977,009
effective search space: 2395401800
effective search space used: 2395401800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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