GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000761-TA|BGIBMGA000761-PA|undefined
         (281 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77665-7|CAI46591.1|  360|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U41538-1|AAG00009.2|  118|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z66513-5|CAA91333.1|  409|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    29   3.7  

>Z77665-7|CAI46591.1|  360|Caenorhabditis elegans Hypothetical
           protein K02E11.10 protein.
          Length = 360

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 112 LGPAASCGMTANPYAVPLYGGAPVQGYGCAPTDLPHYGDMRGAGWYPA 159
           + P+   G     YA P  GG  + G+G AP   P +G + G G+  A
Sbjct: 76  VAPSGGFGGAGGSYAAPALGGG-LGGFGGAPAPAPAFGGL-GGGYQAA 121


>U41538-1|AAG00009.2|  118|Caenorhabditis elegans Hypothetical
           protein R04E5.7 protein.
          Length = 118

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 230 YIRYNVFTGHPRGDAQYLYYAPVFIHAQFARQFILYWQH 268
           +I + +F G P  D     +AP  +H  F+  FI+   H
Sbjct: 11  FIHFVLFFGRPDSDTHSFVFAPFAVHQSFSPSFIMMHIH 49


>Z66513-5|CAA91333.1|  409|Caenorhabditis elegans Hypothetical
           protein F54D5.7 protein.
          Length = 409

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/18 (66%), Positives = 12/18 (66%)

Query: 132 GAPVQGYGCAPTDLPHYG 149
           GAP QGYGCA T    YG
Sbjct: 79  GAPYQGYGCAGTSTVGYG 96


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 138 YGCAPTDLPHYGDMRGAGWYPASNDPRFANN 168
           YG  P    H  D RG G Y  SND RF NN
Sbjct: 175 YGTMPAGGFH--DRRGGGSYRGSNDCRFNNN 203


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.138    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,355,634
Number of Sequences: 27539
Number of extensions: 253141
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 5
length of query: 281
length of database: 12,573,161
effective HSP length: 81
effective length of query: 200
effective length of database: 10,342,502
effective search space: 2068500400
effective search space used: 2068500400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)