GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000761-TA|BGIBMGA000761-PA|undefined
         (281 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom...    30   2.0  
At1g78240.1 68414.m09118 dehydration-responsive protein-related ...    28   8.1  

>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain; non-consensus TG acceptor splice site at
           exon boundary 79262
          Length = 880

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 169 KNLDKE-QTKLFILHDCLPDVGIEPTTLSVTVRVV-NYCTTESLQLSRLTAIEARRFPIN 226
           K  D+E +T+  +       V I  +  S   RV  N+C T  + L R     +    +N
Sbjct: 287 KAQDQEIETEAKVQDSMASQVDISESLCSNEERVFCNHCATSIVDLHRSCPKCSYELCLN 346

Query: 227 CARYIRYNVFTGHPRGDAQYLYYAPVFIHAQFA 259
           C + IR    +  P    Q+ Y    +IH + A
Sbjct: 347 CCQEIRGGWLSDRPECQLQFEYRGTRYIHGEAA 379


>At1g78240.1 68414.m09118 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 684

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 149 GDMRGAGWYPASNDPRFANNKNLDKEQTKLFILHDCLPDV-GIEPTTLSVTVR 200
           G  R   W P     R+ +  N++K +  L+ LH   P+V G +     +TVR
Sbjct: 453 GGTRSRRWIPIEGRTRWPSRSNMNKTELSLYGLH---PEVLGEDAENWKITVR 502


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.138    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,948,065
Number of Sequences: 28952
Number of extensions: 225814
Number of successful extensions: 412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 2
length of query: 281
length of database: 12,070,560
effective HSP length: 80
effective length of query: 201
effective length of database: 9,754,400
effective search space: 1960634400
effective search space used: 1960634400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)