Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000760-TA|BGIBMGA000760-PA|IPR002345|Lipocalin,
IPR006592|RNA polymerase I subunit A, N-terminal, IPR007080|RNA
polymerase Rpb1, domain 1, IPR000722|RNA polymerase, alpha subunit,
IPR007066|RNA polymerase Rpb1, domain 3, IPR007083|RNA polymerase
Rpb1, domain 4, IPR007081|RNA polymerase Rpb1, domain 5
(1191 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O14802 Cluster: DNA-directed RNA polymerase III subunit... 1434 0.0
UniRef50_Q01DV6 Cluster: DNA-directed RNA polymerase; n=15; Euka... 1088 0.0
UniRef50_Q54ZZ2 Cluster: DNA-directed RNA polymerase; n=2; Dicty... 1037 0.0
UniRef50_UPI000049A544 Cluster: DNA-directed RNA polymerase III ... 1011 0.0
UniRef50_O94666 Cluster: DNA-directed RNA polymerase III subunit... 993 0.0
UniRef50_Q9LVH0 Cluster: DNA-directed RNA polymerase; n=11; Euph... 970 0.0
UniRef50_A6SCV1 Cluster: DNA-directed RNA polymerase; n=19; Fung... 924 0.0
UniRef50_Q7RXJ6 Cluster: DNA-directed RNA polymerase; n=4; root|... 919 0.0
UniRef50_P04051 Cluster: DNA-directed RNA polymerase III subunit... 919 0.0
UniRef50_A2DEX5 Cluster: DNA-directed RNA polymerase; n=1; Trich... 890 0.0
UniRef50_Q0V3B7 Cluster: DNA-directed RNA polymerase; n=2; Ascom... 888 0.0
UniRef50_Q8SRM3 Cluster: DNA-directed RNA polymerase; n=1; Encep... 867 0.0
UniRef50_Q9VXP9 Cluster: DNA-directed RNA polymerase; n=4; Dipte... 841 0.0
UniRef50_Q7YYV9 Cluster: DNA-directed RNA polymerase; n=3; Crypt... 793 0.0
UniRef50_P08968 Cluster: DNA-directed RNA polymerase III subunit... 756 0.0
UniRef50_A7AP17 Cluster: RNA polymerase Rpb1, domain containing ... 754 0.0
UniRef50_Q3SE62 Cluster: DNA-directed RNA polymerase; n=3; Param... 753 0.0
UniRef50_Q4U940 Cluster: DNA-directed RNA polymerase III largest... 670 0.0
UniRef50_P31813 Cluster: DNA-directed RNA polymerase subunit A';... 663 0.0
UniRef50_Q22M85 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 648 0.0
UniRef50_P11512 Cluster: DNA-directed RNA polymerase subunit A';... 601 e-170
UniRef50_Q84KP6 Cluster: DNA-directed RNA polymerase; n=3; Eukar... 594 e-168
UniRef50_Q8MX30 Cluster: DNA-directed RNA polymerase; n=1; Naegl... 593 e-168
UniRef50_Q4N0F9 Cluster: DNA-directed RNA polymerase II largest ... 592 e-167
UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit ... 588 e-166
UniRef50_P04050 Cluster: DNA-directed RNA polymerase II subunit ... 585 e-165
UniRef50_Q5CUJ2 Cluster: DNA-directed RNA polymerase; n=3; Eukar... 581 e-164
UniRef50_Q71ET7 Cluster: DNA-directed RNA polymerase; n=689; Euk... 565 e-159
UniRef50_Q27095 Cluster: DNA-directed RNA polymerase; n=2; Trich... 565 e-159
UniRef50_Q8PUR1 Cluster: DNA-directed RNA polymerase subunit A';... 564 e-159
UniRef50_Q98RN1 Cluster: DNA-directed RNA polymerase; n=1; Guill... 558 e-157
UniRef50_A7AWJ0 Cluster: DNA-directed RNA polymerase II largest ... 557 e-157
UniRef50_Q9AXN0 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 555 e-156
UniRef50_P41556 Cluster: DNA-directed RNA polymerase subunit A';... 545 e-153
UniRef50_Q74M69 Cluster: DNA-directed RNA polymerase; n=1; Nanoa... 544 e-153
UniRef50_A5K7T9 Cluster: DNA-directed RNA polymerase; n=1; Plasm... 543 e-153
UniRef50_Q010D7 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 543 e-152
UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit... 542 e-152
UniRef50_O77165 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 537 e-151
UniRef50_Q7RQQ6 Cluster: DNA-directed RNA polymerase; n=9; Plasm... 530 e-149
UniRef50_O27125 Cluster: DNA-directed RNA polymerase subunit A';... 529 e-148
UniRef50_Q8SSC4 Cluster: DNA-directed RNA polymerase II subunit ... 526 e-147
UniRef50_Q9HM79 Cluster: DNA-directed RNA polymerase subunit A';... 521 e-146
UniRef50_Q6IUR3 Cluster: DNA-directed RNA polymerase; n=3; Entam... 517 e-145
UniRef50_Q9AVW8 Cluster: DNA-directed RNA polymerase II largest ... 516 e-144
UniRef50_Q9BMP2 Cluster: DNA-directed RNA polymerase; n=2; Stylo... 514 e-144
UniRef50_A1YIC5 Cluster: DNA-directed RNA polymerase; n=1; Chytr... 513 e-143
UniRef50_P17545 Cluster: DNA-directed RNA polymerase II subunit ... 508 e-142
UniRef50_Q8LLJ6 Cluster: DNA-directed RNA polymerase; n=1; Ochro... 497 e-139
UniRef50_O96452 Cluster: DNA-directed RNA polymerase; n=1; Anton... 490 e-137
UniRef50_Q3SE61 Cluster: DNA-directed RNA polymerase; n=2; Param... 477 e-133
UniRef50_Q8TCW3 Cluster: DNA-directed RNA polymerase; n=17; Meta... 472 e-131
UniRef50_Q9BHZ7 Cluster: DNA-directed RNA polymerase; n=2; Gluge... 464 e-129
UniRef50_Q9BHM4 Cluster: DNA-directed RNA polymerase; n=1; Pleis... 451 e-125
UniRef50_Q7T6X5 Cluster: DNA-directed RNA polymerase subunit 1; ... 446 e-123
UniRef50_A3AV59 Cluster: DNA-directed RNA polymerase; n=1; Oryza... 442 e-122
UniRef50_UPI00006CF1E9 Cluster: RNA polymerase Rpb1, domain 2 fa... 439 e-121
UniRef50_Q27900 Cluster: DNA-directed RNA polymerase; n=1; Euplo... 433 e-119
UniRef50_Q4A369 Cluster: DNA-directed RNA polymerase; n=1; Emili... 431 e-119
UniRef50_Q6C1S4 Cluster: DNA-directed RNA polymerase; n=1; Yarro... 431 e-119
UniRef50_P15398 Cluster: DNA-directed RNA polymerase I subunit R... 411 e-113
UniRef50_P25202 Cluster: DNA-directed RNA polymerase III subunit... 409 e-112
UniRef50_A2GJD3 Cluster: DNA-directed RNA polymerase; n=3; Trich... 406 e-111
UniRef50_Q00WA2 Cluster: DNA-directed RNA polymerase; n=2; Ostre... 399 e-109
UniRef50_A4RCX8 Cluster: DNA-directed RNA polymerase; n=3; Sorda... 396 e-108
UniRef50_Q8SS15 Cluster: DNA-directed RNA polymerase; n=1; Encep... 382 e-104
UniRef50_Q7RWI3 Cluster: DNA-directed RNA polymerase; n=4; Peziz... 378 e-103
UniRef50_Q3LWE3 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 375 e-102
UniRef50_Q553A1 Cluster: DNA-directed RNA polymerase; n=2; Dicty... 363 1e-98
UniRef50_Q5TMU2 Cluster: DNA-directed RNA polymerase; n=1; Anoph... 361 5e-98
UniRef50_P91875 Cluster: DNA-directed RNA polymerase I subunit R... 361 8e-98
UniRef50_Q16K29 Cluster: DNA-directed RNA polymerase; n=1; Aedes... 357 1e-96
UniRef50_P10964 Cluster: DNA-directed RNA polymerase I subunit R... 357 1e-96
UniRef50_A7PWB4 Cluster: Chromosome chr8 scaffold_34, whole geno... 356 2e-96
UniRef50_O95602 Cluster: DNA-directed RNA polymerase I subunit R... 355 4e-96
UniRef50_O17628 Cluster: DNA-directed RNA polymerase; n=3; Caeno... 352 4e-95
UniRef50_UPI0000DB7146 Cluster: PREDICTED: similar to RNA polyme... 349 2e-94
UniRef50_A5H289 Cluster: DNA-directed RNA polymerase; n=39; Fung... 349 2e-94
UniRef50_A1CP71 Cluster: DNA-directed RNA polymerase; n=8; Eurot... 348 6e-94
UniRef50_A5DCV3 Cluster: DNA-directed RNA polymerase II subunit ... 348 6e-94
UniRef50_UPI0000E46841 Cluster: PREDICTED: similar to RNA polyme... 347 1e-93
UniRef50_Q4PB85 Cluster: DNA-directed RNA polymerase; n=1; Ustil... 347 1e-93
UniRef50_UPI00015B5184 Cluster: PREDICTED: similar to DNA-direct... 346 3e-93
UniRef50_UPI0000D56583 Cluster: PREDICTED: similar to CG10122-PA... 342 4e-92
UniRef50_Q5KIF6 Cluster: DNA-directed RNA polymerase; n=1; Filob... 336 2e-90
UniRef50_A7J5B4 Cluster: RNA polymerase II largest subunit; n=61... 332 4e-89
UniRef50_A6SJ73 Cluster: DNA-directed RNA polymerase; n=2; Scler... 331 8e-89
UniRef50_Q4QEN2 Cluster: DNA-directed RNA polymerase I largest s... 327 1e-87
UniRef50_Q9SVY0 Cluster: DNA-directed RNA polymerase I 190K chai... 322 4e-86
UniRef50_A5BD07 Cluster: DNA-directed RNA polymerase; n=1; Vitis... 316 3e-84
UniRef50_UPI00004998AA Cluster: DNA-directed RNA polymerase I la... 301 5e-80
UniRef50_A7S9W9 Cluster: Predicted protein; n=1; Nematostella ve... 301 7e-80
UniRef50_Q58445 Cluster: DNA-directed RNA polymerase subunit A' ... 299 3e-79
UniRef50_A5K7P4 Cluster: DNA-directed RNA polymerase; n=13; Euka... 298 5e-79
UniRef50_P14248 Cluster: DNA-directed RNA polymerase II subunit ... 298 7e-79
UniRef50_Q8TXI8 Cluster: DNA-directed RNA polymerase; n=1; Metha... 297 9e-79
UniRef50_Q4SF83 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 292 3e-77
UniRef50_P16355 Cluster: DNA-directed RNA polymerase I subunit R... 287 1e-75
UniRef50_Q9BHK6 Cluster: DNA-directed RNA polymerase; n=1; Sprag... 285 4e-75
UniRef50_Q6E6G2 Cluster: DNA-directed RNA polymerase; n=1; Anton... 271 7e-71
UniRef50_Q0PQ09 Cluster: DNA-directed RNA polymerase; n=8; Peziz... 264 1e-68
UniRef50_Q9BHM2 Cluster: DNA-directed RNA polymerase; n=5; Pleis... 263 2e-68
UniRef50_P42486 Cluster: DNA-directed RNA polymerase subunit 1; ... 262 4e-68
UniRef50_Q06VN9 Cluster: DNA-directed RNA polymerase; n=1; Trich... 257 2e-66
UniRef50_Q9BHJ4 Cluster: DNA-directed RNA polymerase; n=2; Trach... 256 3e-66
UniRef50_A0DJB3 Cluster: DNA-directed RNA polymerase; n=2; Oligo... 245 5e-63
UniRef50_Q23DD6 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 235 5e-60
UniRef50_Q196X0 Cluster: DNA-directed RNA polymerase; n=1; Aedes... 219 5e-55
UniRef50_Q69X40 Cluster: DNA-directed RNA polymerase; n=6; Oryza... 215 6e-54
UniRef50_UPI0000ECBC5B Cluster: UPI0000ECBC5B related cluster; n... 212 4e-53
UniRef50_Q2TUP1 Cluster: DNA-directed RNA polymerase; n=8; Sperm... 212 6e-53
UniRef50_Q7SXQ2 Cluster: DNA-directed RNA polymerase; n=11; Eume... 210 1e-52
UniRef50_Q1L5Y5 Cluster: DNA-directed RNA polymerase; n=4; Chara... 206 4e-51
UniRef50_A3BPR9 Cluster: DNA-directed RNA polymerase; n=7; Magno... 200 2e-49
UniRef50_Q8MUU2 Cluster: DNA-directed RNA polymerase; n=4; Giard... 200 2e-49
UniRef50_A1DYG9 Cluster: DNA-directed RNA polymerase; n=1; Horta... 199 4e-49
UniRef50_Q26008 Cluster: DNA-directed RNA polymerase; n=2; Plasm... 185 7e-45
UniRef50_A6R8S3 Cluster: DNA-directed RNA polymerase; n=1; Ajell... 185 7e-45
UniRef50_Q83066 Cluster: DNA-directed RNA polymerase; n=3; Lymph... 184 1e-44
UniRef50_Q4UI00 Cluster: DNA-directed RNA polymerase; n=2; Theil... 181 1e-43
UniRef50_A2DXG8 Cluster: DNA-directed RNA polymerase; n=1; Trich... 175 8e-42
UniRef50_Q7RJK4 Cluster: DNA-directed RNA polymerase; n=13; Euka... 173 2e-41
UniRef50_A5KB21 Cluster: DNA-directed RNA polymerase; n=1; Plasm... 173 2e-41
UniRef50_A7ARZ5 Cluster: DNA directed RNA polymerase; n=1; Babes... 171 1e-40
UniRef50_A5BZZ3 Cluster: DNA-directed RNA polymerase; n=1; Vitis... 166 3e-39
UniRef50_A3FQH3 Cluster: DNA-directed RNA polymerase; n=2; Crypt... 163 3e-38
UniRef50_Q4D133 Cluster: DNA-directed RNA polymerase; n=7; Trypa... 159 3e-37
UniRef50_A3A384 Cluster: DNA-directed RNA polymerase; n=2; Oryza... 159 4e-37
UniRef50_Q8R7U7 Cluster: DNA-directed RNA polymerase subunit bet... 159 4e-37
UniRef50_Q9AW39 Cluster: DNA-directed RNA polymerase; n=1; Guill... 154 1e-35
UniRef50_UPI0000F1FC15 Cluster: PREDICTED: similar to polymerase... 154 2e-35
UniRef50_UPI0000ECC670 Cluster: DNA-directed RNA polymerase I la... 151 1e-34
UniRef50_Q5FTX8 Cluster: DNA-directed RNA polymerase subunit bet... 150 3e-34
UniRef50_Q9LQ02 Cluster: DNA-directed RNA polymerase; n=1; Arabi... 149 3e-34
UniRef50_Q3LWD4 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 149 4e-34
UniRef50_Q8KG14 Cluster: DNA-directed RNA polymerase subunit bet... 149 4e-34
UniRef50_A4E9H2 Cluster: DNA-directed RNA polymerase; n=1; Colli... 147 1e-33
UniRef50_Q9NBG7 Cluster: RNA polymerase III large subunit 2; n=2... 144 1e-32
UniRef50_P28363 Cluster: DNA-directed RNA polymerase I largest s... 144 1e-32
UniRef50_A4GIA1 Cluster: DNA-directed RNA polymerase; n=1; uncul... 138 8e-31
UniRef50_Q5YF58 Cluster: DNA-directed RNA polymerase; n=6; Irido... 138 1e-30
UniRef50_Q1L5X6 Cluster: DNA-directed RNA polymerase; n=2; lamii... 136 3e-30
UniRef50_Q0E593 Cluster: DNA-directed RNA polymerase; n=2; Ascov... 135 8e-30
UniRef50_Q01JX0 Cluster: DNA-directed RNA polymerase; n=5; Oryza... 134 1e-29
UniRef50_Q7R0K2 Cluster: DNA-directed RNA polymerase; n=1; Giard... 134 1e-29
UniRef50_Q6F0L8 Cluster: DNA-directed RNA polymerase subunit bet... 134 2e-29
UniRef50_Q97NQ8 Cluster: DNA-directed RNA polymerase subunit bet... 132 7e-29
UniRef50_Q89506 Cluster: DNA-directed RNA polymerase; n=2; Inver... 130 2e-28
UniRef50_Q9PQV5 Cluster: DNA-directed RNA polymerase subunit bet... 129 5e-28
UniRef50_Q2N101 Cluster: DNA-directed RNA polymerase; n=1; Aphro... 128 7e-28
UniRef50_Q2RFP0 Cluster: DNA-directed RNA polymerase subunit bet... 127 2e-27
UniRef50_P95405 Cluster: DNA-directed RNA polymerase subunit bet... 127 2e-27
UniRef50_Q5D869 Cluster: DNA-directed RNA polymerase; n=6; Magno... 126 3e-27
UniRef50_Q6YHB9 Cluster: DNA-directed RNA polymerase; n=5; Ranav... 126 4e-27
UniRef50_Q3ZJ92 Cluster: DNA-directed RNA polymerase; n=1; Pseud... 126 5e-27
UniRef50_Q9TL05 Cluster: DNA-directed RNA polymerase subunit bet... 125 6e-27
UniRef50_A4M8H7 Cluster: DNA-directed RNA polymerase; n=1; Petro... 125 8e-27
UniRef50_Q0LJX1 Cluster: DNA-directed RNA polymerase, subunit be... 123 3e-26
UniRef50_A7HNY1 Cluster: DNA-directed RNA polymerase, beta' subu... 123 3e-26
UniRef50_A5USR6 Cluster: DNA-directed RNA polymerase; n=4; Chlor... 123 3e-26
UniRef50_Q890N5 Cluster: DNA-directed RNA polymerase subunit bet... 123 3e-26
UniRef50_A6PR79 Cluster: DNA-directed RNA polymerase, beta' subu... 122 4e-26
UniRef50_Q7VRP8 Cluster: DNA-directed RNA polymerase subunit bet... 122 4e-26
UniRef50_A6DPM8 Cluster: DNA-directed RNA polymerase subunit bet... 121 1e-25
UniRef50_Q8RHI7 Cluster: DNA-directed RNA polymerase subunit bet... 121 1e-25
UniRef50_A5Z8Z4 Cluster: DNA-directed RNA polymerase; n=2; Bacte... 120 2e-25
UniRef50_Q7MX26 Cluster: DNA-directed RNA polymerase subunit bet... 120 2e-25
UniRef50_A2ZAM7 Cluster: DNA-directed RNA polymerase; n=9; Magno... 120 2e-25
UniRef50_P36252 Cluster: DNA-directed RNA polymerase subunit bet... 120 2e-25
UniRef50_Q19V99 Cluster: DNA-directed RNA polymerase; n=2; Strep... 120 3e-25
UniRef50_Q82DQ4 Cluster: DNA-directed RNA polymerase subunit bet... 120 3e-25
UniRef50_Q7U8K3 Cluster: DNA-directed RNA polymerase subunit gam... 119 4e-25
UniRef50_Q2LQ86 Cluster: DNA-directed RNA polymerase subunit bet... 119 5e-25
UniRef50_Q2W2I2 Cluster: DNA-directed RNA polymerase subunit bet... 119 5e-25
UniRef50_Q9MUS6 Cluster: DNA-directed RNA polymerase subunit bet... 119 5e-25
UniRef50_Q9CK92 Cluster: DNA-directed RNA polymerase subunit bet... 118 7e-25
UniRef50_Q7VKL8 Cluster: DNA-directed RNA polymerase subunit bet... 117 2e-24
UniRef50_O67763 Cluster: DNA-directed RNA polymerase subunit bet... 117 2e-24
UniRef50_P47582 Cluster: DNA-directed RNA polymerase subunit bet... 116 5e-24
UniRef50_Q20EX2 Cluster: DNA-directed RNA polymerase; n=1; Oltma... 115 7e-24
UniRef50_Q32RG1 Cluster: DNA-directed RNA polymerase subunit bet... 115 9e-24
UniRef50_Q7VJ82 Cluster: Bifunctional DNA-directed RNA polymeras... 115 9e-24
UniRef50_Q1L5X9 Cluster: DNA-directed RNA polymerase; n=1; March... 113 4e-23
UniRef50_Q6YQW2 Cluster: DNA-directed RNA polymerase subunit bet... 113 4e-23
UniRef50_Q9RVW0 Cluster: DNA-directed RNA polymerase subunit bet... 113 4e-23
UniRef50_P49467 Cluster: DNA-directed RNA polymerase subunit bet... 111 8e-23
UniRef50_Q06J18 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 111 1e-22
UniRef50_Q4A5S8 Cluster: DNA-directed RNA polymerase subunit bet... 111 1e-22
UniRef50_Q06SJ9 Cluster: DNA-directed RNA polymerase; n=1; Stige... 110 2e-22
UniRef50_Q9AIH0 Cluster: DNA-directed RNA polymerase; n=17; Cand... 109 3e-22
UniRef50_Q3ZX00 Cluster: DNA-directed RNA polymerase subunit bet... 108 8e-22
UniRef50_Q8G515 Cluster: DNA-directed RNA polymerase subunit bet... 108 8e-22
UniRef50_A3ZLH7 Cluster: DNA-directed RNA polymerase; n=2; Planc... 108 1e-21
UniRef50_A3A1U6 Cluster: DNA-directed RNA polymerase; n=2; Oryza... 108 1e-21
UniRef50_Q9Z999 Cluster: DNA-directed RNA polymerase subunit bet... 108 1e-21
UniRef50_Q73JJ8 Cluster: DNA-directed RNA polymerase subunit bet... 107 1e-21
UniRef50_O28390 Cluster: DNA-directed RNA polymerase subunit A''... 107 1e-21
UniRef50_A6BM51 Cluster: DNA-directed RNA polymerase; n=5; Sperm... 107 2e-21
UniRef50_Q39KH4 Cluster: DNA-directed RNA polymerase subunit bet... 107 2e-21
UniRef50_Q5D868 Cluster: DNA-directed RNA polymerase; n=1; Spina... 105 5e-21
UniRef50_Q2TUP4 Cluster: DNA-directed RNA polymerase; n=2; basal... 105 5e-21
UniRef50_Q8HUH0 Cluster: DNA-directed RNA polymerase subunit bet... 105 7e-21
UniRef50_Q32RY3 Cluster: DNA-directed RNA polymerase subunit bet... 105 1e-20
UniRef50_P29158 Cluster: DNA-directed RNA polymerase subunit A''... 105 1e-20
UniRef50_P56763 Cluster: DNA-directed RNA polymerase subunit bet... 104 1e-20
UniRef50_A2WZF3 Cluster: DNA-directed RNA polymerase; n=1; Oryza... 102 5e-20
UniRef50_O27126 Cluster: DNA-directed RNA polymerase subunit A''... 101 1e-19
UniRef50_A7QKE4 Cluster: Chromosome chr2 scaffold_112, whole gen... 101 2e-19
UniRef50_Q0P3M5 Cluster: DNA-directed RNA polymerase subunit bet... 101 2e-19
UniRef50_Q1KVT3 Cluster: DNA-directed RNA polymerase; n=1; Scene... 100 2e-19
UniRef50_Q1L5Y1 Cluster: DNA-directed RNA polymerase; n=1; Cerat... 99 6e-19
UniRef50_P56300 Cluster: DNA-directed RNA polymerase subunit bet... 99 6e-19
UniRef50_A6YGE1 Cluster: DNA-directed RNA polymerase; n=1; Lepto... 97 2e-18
UniRef50_Q2EEW9 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 94 2e-17
UniRef50_A3AWK7 Cluster: DNA-directed RNA polymerase; n=4; Oryza... 94 2e-17
UniRef50_Q2N124 Cluster: RNA polymerase III large subunit; n=1; ... 93 3e-17
UniRef50_O21238 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 93 3e-17
UniRef50_Q03586 Cluster: DNA-directed RNA polymerase subunit A''... 90 3e-16
UniRef50_Q8PUR2 Cluster: DNA-directed RNA polymerase subunit A''... 90 4e-16
UniRef50_Q0PNI1 Cluster: DNA-directed RNA polymerase; n=58; Basi... 89 7e-16
UniRef50_A1RWW4 Cluster: DNA-directed RNA polymerase, subunit A'... 89 7e-16
UniRef50_Q5ELZ9 Cluster: DNA-directed RNA polymerase; n=47; Basi... 89 9e-16
UniRef50_A7P7C3 Cluster: Chromosome chr9 scaffold_7, whole genom... 86 5e-15
UniRef50_Q9YAU2 Cluster: DNA-directed RNA polymerase subunit A''... 85 8e-15
UniRef50_Q8ZYQ7 Cluster: DNA-directed RNA polymerase subunit A''... 84 3e-14
UniRef50_P15354 Cluster: DNA-directed RNA polymerase subunit A''... 83 3e-14
UniRef50_A5CB27 Cluster: DNA-directed RNA polymerase; n=2; Vitis... 83 4e-14
UniRef50_Q1L5X8 Cluster: DNA-directed RNA polymerase; n=1; Sphag... 82 8e-14
UniRef50_A6NYC6 Cluster: DNA-directed RNA polymerase; n=1; Bacte... 81 1e-13
UniRef50_Q9YW50 Cluster: DNA-directed RNA polymerase; n=2; Entom... 80 4e-13
UniRef50_Q3LWH2 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 78 1e-12
UniRef50_Q1L5Y0 Cluster: DNA-directed RNA polymerase; n=1; Antho... 78 2e-12
UniRef50_P07392 Cluster: DNA-directed RNA polymerase 147 kDa pol... 77 2e-12
UniRef50_Q74MX8 Cluster: NEQ427; n=1; Nanoarchaeum equitans|Rep:... 76 5e-12
UniRef50_Q2N100 Cluster: RNA polymerase I large subunit; n=1; Ap... 76 7e-12
UniRef50_A7AXE4 Cluster: RpoC1; n=1; Babesia bovis|Rep: RpoC1 - ... 75 1e-11
UniRef50_Q8KTP7 Cluster: DNA-directed RNA polymerase; n=1; Candi... 72 8e-11
UniRef50_Q9MTD4 Cluster: DNA-directed RNA polymerase; n=3; Sarco... 72 8e-11
UniRef50_Q8TXI9 Cluster: DNA-directed RNA polymerase largest sub... 72 8e-11
UniRef50_Q98Q24 Cluster: DNA-directed RNA polymerase subunit bet... 70 4e-10
UniRef50_Q2N0X2 Cluster: RNA polymerase III large subunit; n=1; ... 69 6e-10
UniRef50_P23580 Cluster: DNA-directed RNA polymerase subunit bet... 69 6e-10
UniRef50_Q0P3M4 Cluster: DNA-directed RNA polymerase; n=1; Ostre... 67 2e-09
UniRef50_Q4G3A5 Cluster: DNA-directed RNA polymerase subunit bet... 67 3e-09
UniRef50_Q110H3 Cluster: DNA-directed RNA polymerase, beta'' sub... 66 4e-09
UniRef50_P22705 Cluster: DNA-directed RNA polymerase subunit bet... 66 7e-09
UniRef50_Q7YN58 Cluster: DNA-directed RNA polymerase; n=1; Eimer... 64 2e-08
UniRef50_O78483 Cluster: DNA-directed RNA polymerase subunit bet... 64 2e-08
UniRef50_Q5S1Y5 Cluster: DNA-directed RNA polymerase; n=1; Agari... 64 3e-08
UniRef50_Q7VA30 Cluster: DNA-directed RNA polymerase subunit bet... 64 3e-08
UniRef50_A2FYC3 Cluster: DNA-directed RNA polymerase; n=1; Trich... 63 5e-08
UniRef50_Q9MUS7 Cluster: DNA-directed RNA polymerase subunit bet... 62 9e-08
UniRef50_A0T0Q9 Cluster: DNA-directed RNA polymerase subunit bet... 62 1e-07
UniRef50_P49468 Cluster: DNA-directed RNA polymerase subunit bet... 62 1e-07
UniRef50_Q6B8R6 Cluster: DNA-directed RNA polymerase subunit bet... 62 1e-07
UniRef50_Q4MY94 Cluster: DNA-directed RNA polymerase beta' chain... 61 2e-07
UniRef50_A0T0D9 Cluster: DNA-directed RNA polymerase subunit bet... 61 2e-07
UniRef50_Q91FI1 Cluster: 343L; n=1; Invertebrate iridescent viru... 60 3e-07
UniRef50_Q9TL04 Cluster: DNA-directed RNA polymerase subunit bet... 60 3e-07
UniRef50_P12465 Cluster: DNA-directed RNA polymerase subunit bet... 60 3e-07
UniRef50_A6YGE2 Cluster: DNA-directed RNA polymerase; n=1; Lepto... 60 5e-07
UniRef50_Q0E534 Cluster: 52.2 kDa DNA-directed RNA polymerase II... 59 6e-07
UniRef50_Q06J19 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 59 6e-07
UniRef50_Q9TM34 Cluster: DNA-directed RNA polymerase subunit bet... 58 1e-06
UniRef50_Q1ACN4 Cluster: DNA-directed RNA polymerase subunit bet... 58 1e-06
UniRef50_Q8JRS8 Cluster: DNA-directed RNA polymerase; n=1; Diach... 58 1e-06
UniRef50_Q7YN59 Cluster: RNA polymerase C2; n=1; Eimeria tenella... 58 1e-06
UniRef50_P48120 Cluster: DNA-directed RNA polymerase subunit bet... 58 1e-06
UniRef50_Q58446 Cluster: DNA-directed RNA polymerase subunit A''... 58 2e-06
UniRef50_Q2EEX0 Cluster: DNA-directed RNA polymerase; n=1; Helic... 56 4e-06
UniRef50_Q7PCJ6 Cluster: DNA-directed RNA polymerase subunit bet... 56 8e-06
UniRef50_Q20EX3 Cluster: DNA-directed RNA polymerase; n=1; Oltma... 55 1e-05
UniRef50_Q1KVX8 Cluster: DNA-directed RNA polymerase; n=1; Scene... 55 1e-05
UniRef50_Q32RY2 Cluster: DNA-directed RNA polymerase subunit bet... 55 1e-05
UniRef50_Q3ZJ90 Cluster: DNA-directed RNA polymerase subunit bet... 55 1e-05
UniRef50_P60290 Cluster: DNA-directed RNA polymerase subunit bet... 55 1e-05
UniRef50_P23581 Cluster: DNA-directed RNA polymerase subunit bet... 55 1e-05
UniRef50_Q8MA10 Cluster: DNA-directed RNA polymerase subunit bet... 55 1e-05
UniRef50_Q2WGI4 Cluster: DNA-directed RNA polymerase; n=1; Selag... 54 2e-05
UniRef50_Q1L5X7 Cluster: DNA-directed RNA polymerase; n=1; Solan... 54 2e-05
UniRef50_Q19VA0 Cluster: DNA-directed RNA polymerase; n=1; Chlor... 54 2e-05
UniRef50_P06274 Cluster: DNA-directed RNA polymerase subunit bet... 54 2e-05
UniRef50_P16025 Cluster: DNA-directed RNA polymerase subunit bet... 54 2e-05
UniRef50_Q18EX7 Cluster: DNA-directed RNA polymerase subunit A''... 54 2e-05
UniRef50_P41606 Cluster: DNA-directed RNA polymerase subunit bet... 54 2e-05
UniRef50_P05472 Cluster: Probable DNA-directed RNA polymerase; n... 54 3e-05
UniRef50_Q5SCY0 Cluster: DNA-directed RNA polymerase; n=2; Embry... 53 4e-05
UniRef50_Q8WI26 Cluster: DNA-directed RNA polymerase subunit bet... 53 4e-05
UniRef50_Q85C71 Cluster: DNA-directed RNA polymerase subunit bet... 53 4e-05
UniRef50_P60289 Cluster: DNA-directed RNA polymerase subunit bet... 53 5e-05
UniRef50_Q85FM9 Cluster: DNA-directed RNA polymerase subunit bet... 53 5e-05
UniRef50_P21422 Cluster: DNA-directed RNA polymerase beta' chain... 52 7e-05
UniRef50_Q7X621 Cluster: DNA-directed RNA polymerase; n=3; Oryza... 52 9e-05
UniRef50_Q06SF2 Cluster: DNA-directed RNA polymerase; n=1; Stige... 52 9e-05
UniRef50_A7QYV9 Cluster: Chromosome chr6 scaffold_256, whole gen... 52 1e-04
UniRef50_P56764 Cluster: DNA-directed RNA polymerase subunit bet... 52 1e-04
UniRef50_Q32RG2 Cluster: DNA-directed RNA polymerase subunit bet... 51 2e-04
UniRef50_A7PK27 Cluster: Chromosome chr15 scaffold_19, whole gen... 50 3e-04
UniRef50_Q06VH1 Cluster: RNA polymerase II; n=1; Trichoplusia ni... 50 5e-04
UniRef50_Q2WGI5 Cluster: RNA polymerase beta'' chain; n=1; Selag... 49 7e-04
UniRef50_A5B1A5 Cluster: DNA-directed RNA polymerase; n=1; Vitis... 49 7e-04
UniRef50_A7BVC2 Cluster: DNA-directed RNA polymerase, beta' subu... 49 9e-04
UniRef50_A5B3D8 Cluster: DNA-directed RNA polymerase; n=1; Vitis... 48 0.002
UniRef50_A7AXE3 Cluster: RpoC2-N-terminal; n=1; Babesia bovis|Re... 46 0.005
UniRef50_A7QYV6 Cluster: Chromosome chr6 scaffold_256, whole gen... 46 0.008
UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD... 44 0.025
UniRef50_Q1NYR2 Cluster: DNA-directed RNA polymerase beta' chain... 44 0.033
UniRef50_A7PY14 Cluster: Chromosome chr15 scaffold_37, whole gen... 43 0.044
UniRef50_Q5U8Z4 Cluster: DNA-directed RNA polymerase; n=4; Euthe... 43 0.044
UniRef50_A7BNB4 Cluster: DNA-directed RNA polymerase beta chain;... 42 0.10
UniRef50_A5AJJ3 Cluster: Putative uncharacterized protein; n=1; ... 42 0.13
UniRef50_Q4MY81 Cluster: DNA-directed RNA polymerase beta'' chai... 42 0.13
UniRef50_Q0KB22 Cluster: DNA helicase; n=5; Proteobacteria|Rep: ... 40 0.31
UniRef50_Q820Y2 Cluster: TRNA/rRNA methyltransferase; n=2; Troph... 39 0.94
UniRef50_Q9U7P9 Cluster: Cyclin dependent kinase homolog; n=1; E... 38 1.2
UniRef50_Q7Z755 Cluster: POLR3A protein; n=5; Metazoa|Rep: POLR3... 38 1.2
UniRef50_Q5UP16 Cluster: DNA-directed RNA polymerase; n=1; Acant... 36 5.0
UniRef50_Q3ICG4 Cluster: Putative RNase D, processing tRNAs; n=3... 36 8.8
UniRef50_A7S5V5 Cluster: Predicted protein; n=2; Nematostella ve... 36 8.8
UniRef50_A2F6X2 Cluster: Putative uncharacterized protein; n=1; ... 36 8.8
UniRef50_Q0UFV9 Cluster: Predicted protein; n=1; Phaeosphaeria n... 36 8.8
>UniRef50_O14802 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=17; Bilateria|Rep: DNA-directed RNA polymerase
III subunit RPC1 - Homo sapiens (Human)
Length = 1391
Score = 1434 bits (3554), Expect = 0.0
Identities = 697/1124 (62%), Positives = 849/1124 (75%), Gaps = 27/1124 (2%)
Query: 1 MPKEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRM 60
M KEQ+RET V +K SH+ F + SP ++Q AHI+V++KNL+ QD Q P +GVLD RM
Sbjct: 1 MVKEQFRETDVAKKTSHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRM 60
Query: 61 GTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPES 120
GT++KD CETCG LA+C+GH+GYI L LP FHVGYFRA+I ILQ ICK C +ML +
Sbjct: 61 GTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQE 120
Query: 121 LKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEK 180
KK + P ++YL K+ LK + K + + C C A NG VKK G+LKI+HEK
Sbjct: 121 EKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKC--GLLKIIHEK 178
Query: 181 YRA-KKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPL 239
Y+ KK DPIV L F A E NKEV ++ + ++PL VLNLF+RIP ED+PL
Sbjct: 179 YKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQ-ENLNPLVVLNLFKRIPAEDVPL 237
Query: 240 LGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHL 299
L MN + +P DLILTRL VPPLC RPSVVSD+K+GTNEDDLTMK +EI+ +NDVI +H
Sbjct: 238 LLMNPEAGKPSDLILTRLLVPPLCFRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHR 297
Query: 300 ASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLS 359
S K ++I EDWD+LQL ALYINSE+SGIPL M PKK RG VQRLKGKQGRFRGNLS
Sbjct: 298 ISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLS 357
Query: 360 GKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG 419
GKRVDFS RTVISPDPNL+I EV VPVHVAKILT+PE+V AN+ +LR+LV NGP+VHPG
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Query: 420 ANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHR 479
AN++QQR + K++LKYGNREK+AQELK GD+VERHL+DGDVVLFNRQPSLHKLSIM H
Sbjct: 418 ANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHL 477
Query: 480 AKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVS 539
A+V+P RTFRFNECVCTPYNADFDGDEMN+HLPQTEEA+AEAL+LMG+
Sbjct: 478 ARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGT------------ 525
Query: 540 LEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRI 599
K+NLVTPRNGE LIAA QDF+TG YL+T +DTFF +++A Q+ A +L G D +++
Sbjct: 526 ----KANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKV 581
Query: 600 DMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGN-KDLCVQDSYVIIR 658
+PPP I+KP LWTGKQIFS+I+RP+ V+ANL TKGK Y G +DLC DSYV I+
Sbjct: 582 RLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQ 641
Query: 659 NSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGII 718
NSEL+ GSMDK TLGSG+K++IFYILLRDWG+ A M RLAR+A Y+ NRGFS GI
Sbjct: 642 NSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIG 701
Query: 719 DVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRE 778
DVTPG+ L++AK +LL +GY KCD YI + G LQ QPGCT EETLEA++L ELS IR+
Sbjct: 702 DVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRD 761
Query: 779 LAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHF 838
A AC REL +N+PL MA GSKGS INISQMIACVGQQA++G RVP+GFE+RSLPHF
Sbjct: 762 HAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHF 821
Query: 839 ERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLED 898
E+HSK+PAA+GFV NSFY+GLTPTEFFFHTM GREGLVDTAVKTAETGY+QRRLVKSLED
Sbjct: 822 EKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLED 881
Query: 899 LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNAEPLD 958
L QYD+TVR++TG+++QF YG DGLDP MEGKD P++ RVL +++A + L
Sbjct: 882 LCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCPSEPALS 941
Query: 959 GDGIVLAAEETLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYA----GC--GRAAL 1012
+ ++L E + +F D F E+ F+K + +++ R +Y G R
Sbjct: 942 KNELILTTESIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLY 1001
Query: 1013 QLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASM 1072
QL+R+T TQ+ +FL C KY R +EPG+AVGAL AQSIGEPGTQMTLKTFHF GVASM
Sbjct: 1002 QLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFGGVASM 1061
Query: 1073 NITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
NIT GVPR+KEIINAS+ ISTPIITA+L + D ++AR VKGRI
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRI 1105
Score = 57.6 bits (133), Expect = 2e-06
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1109 ARRVKGRICTSKLKVKPAEVTAVSAWAIKVTG-EPSKSCGWLNMSLQQLGRQLPAVVVKG 1167
A V+ ICTSKL+VKP +V + VT E SKS + LQ L LP VVV+G
Sbjct: 1146 AETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSS--MYYVLQFLKEDLPKVVVQG 1203
Query: 1168 LPQVSRAVIACDDSSEK 1184
+P+VSRAVI D+ S K
Sbjct: 1204 IPEVSRAVIHIDEQSGK 1220
>UniRef50_Q01DV6 Cluster: DNA-directed RNA polymerase; n=15;
Eukaryota|Rep: DNA-directed RNA polymerase - Ostreococcus
tauri
Length = 1406
Score = 1088 bits (2695), Expect = 0.0
Identities = 571/1117 (51%), Positives = 747/1117 (66%), Gaps = 49/1117 (4%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQK-DANCET 71
RKI V F++ S S I ++ V +NL+ Q QR P +G+LD RMGT K C T
Sbjct: 33 RKIRSVKFSLMSSSEIARAGVFHVFERNLY-QMPQRTPMVNGILDPRMGTTDKRGGECAT 91
Query: 72 CGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFIN 131
C + +C GHFGYI+L LPVFH+GYF+ II++LQ +CK C++++L E + ++ +++ N
Sbjct: 92 CRGSMVDCAGHFGYIKLELPVFHIGYFKNIISVLQCVCKGCSRILLNEDDQATFLKRYRN 151
Query: 132 PEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIV 191
P + ++ L + +K K CP C NG+ K++ LKIVHEKY +K P ++
Sbjct: 152 PRLELTQRRLLYKKLTEKCKRCRICPHCGDYNGVTKRAG-QTLKIVHEKY-SKNPA--LL 207
Query: 192 KKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPED 251
++ L +F A + N+++ A + + +++P+ VL++ +RI D+D LL + RPE
Sbjct: 208 EEFLKEFETALKYNEQLRASLPK-VQDDLNPIRVLSILQRITDQDCELLDI---ADRPEH 263
Query: 252 LILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQED 311
L+LT LPVPP CIRPSV D +G+NEDD+TMK +I+ +N+V+ + L + E+
Sbjct: 264 LLLTHLPVPPCCIRPSVEMDGVSGSNEDDITMKLIQIIEVNNVLRQGLEKGLTINNLMEN 323
Query: 312 WDYLQLHAALYINSEMSGIPLAMQ-PKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTV 370
WD+LQ+ A+YINSE+ G+ L Q P KP RG VQRLKGKQGRFRGNLSGKRVDFS+RTV
Sbjct: 324 WDFLQIQCAMYINSELPGLSLQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFSARTV 383
Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKT 430
ISPDPNL I EVG+P+++AK +TYPE V N+ LR V NG HPGAN+V+
Sbjct: 384 ISPDPNLGIDEVGIPIYIAKTMTYPEVVNRHNIAMLRERVRNGMAEHPGANFVKFAS-GG 442
Query: 431 KKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRF 490
+YLKYG+R KIA EL+ GD+VERHL DGD++LFNRQPSLHK+SIM H+A+V P RT R
Sbjct: 443 MQYLKYGDRRKIASELRFGDIVERHLHDGDILLFNRQPSLHKMSIMAHKARVMPCRTLRL 502
Query: 491 NECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTP 550
NECVCTPYNADFDGDEMN+H PQTEEARAEA+ LMG H+ NL TP
Sbjct: 503 NECVCTPYNADFDGDEMNIHCPQTEEARAEAMQLMGVHH----------------NLCTP 546
Query: 551 RNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPR 610
+NGE+L+AATQDF+T +L+T +D FF +S+ QL A + DA + +D+P PAI+KP
Sbjct: 547 KNGEILVAATQDFLTAAFLLTAKDVFFDRSQVGQLVAYM---GDALLSVDLPTPAIVKPI 603
Query: 611 KLWTGKQIFSLIMRPNRRCEVKANLETKGKNYT-GNKDLCVQDSYVIIRNSELVCGSMDK 669
++WTGKQIF +++RP ++ NLE K Y +K +C D YV I+NSE++ G + K
Sbjct: 604 EMWTGKQIFGMLIRPKASDQIFVNLEVAEKLYNKKDKTMCPDDGYVCIQNSEIMAGRLGK 663
Query: 670 STLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEA 729
+TLGSG K+ +FY+L ++G A M RLA++++ ++ RGFS GI DV+P +L
Sbjct: 664 ATLGSGNKNGLFYVLNIEYGPVAAADAMNRLAKLSARWLGTRGFSIGIDDVSPAAELEAE 723
Query: 730 KNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELH 789
K + +E GY+ CD I EKGTL Q GC EETLEA +L LSS+RE A AC + L
Sbjct: 724 KQRRIEDGYATCDQRIASYEKGTLPLQAGCNAEETLEAEVLGVLSSVREAAGNACLQALP 783
Query: 790 PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARG 849
NAPLIMA GSKGS INISQM+ACVGQQA++G R P+GF RSLPHF+R K PAA+G
Sbjct: 784 RHNAPLIMALCGSKGSTINISQMVACVGQQAVSGSRPPDGFAHRSLPHFKRGEKTPAAKG 843
Query: 850 FVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRN 909
FV NSFY+G+ PTEFFFHTM GREGLVDTAVKTAETGY+ RRL+K+LEDL L YD TVRN
Sbjct: 844 FVANSFYSGMRPTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLSYDGTVRN 903
Query: 910 ATGEVVQFRYGSDGLDPTYMEGKD-RPVDLARVLADVRAKCQDKNAEPLDGDGIVLAAEE 968
+ G +VQ RYG DG++PT ME ++ +P++ R L +V K P G+ V A
Sbjct: 904 SMGGIVQLRYGDDGMEPTLMESENAQPIEFKRCLMNV------KGLHPARGEAPVTKAVL 957
Query: 969 TLALDDFKTSTDEFK--NELLSFLKATAGRVRALRARYAGCGRAALQLER-------LTL 1019
AL FK +E G + L R ++E ++
Sbjct: 958 HAALAKFKKENKLLNTGDEADGQELVYGGGISELFFRQMS-EFITSEIESPSDGGAVISE 1016
Query: 1020 TQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 1079
+QL FL VC KY IEPGTAVGA+ AQSIGEPGTQMTLKTFHFAGVASMNIT GVP
Sbjct: 1017 SQLNTFLDVCMQKYNAKRIEPGTAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNITLGVP 1076
Query: 1080 RVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
R+KEIINAS++ISTPII+A LM D + AR VKGR+
Sbjct: 1077 RIKEIINASKSISTPIISASLMSDRDVKAARVVKGRV 1113
Score = 35.5 bits (78), Expect = 8.8
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 1116 ICTSKLKVKPAEVTAVSAWAIKVTG-EPSKSCGWLNMSLQQLGRQLPAVVVKGLPQVSRA 1174
+ KLK+KP V + V E S G +LQ + +P V+V+G+P V RA
Sbjct: 1162 LAAPKLKLKPQHVLIAGPNVLHVLPTEESLVEGKALFALQHMRLAIPGVIVQGIPSVGRA 1221
Query: 1175 VI 1176
VI
Sbjct: 1222 VI 1223
>UniRef50_Q54ZZ2 Cluster: DNA-directed RNA polymerase; n=2;
Dictyostelium discoideum|Rep: DNA-directed RNA
polymerase - Dictyostelium discoideum AX4
Length = 1450
Score = 1037 bits (2567), Expect = 0.0
Identities = 514/986 (52%), Positives = 672/986 (68%), Gaps = 28/986 (2%)
Query: 4 EQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTN 63
E +E +KI H+ F + S I + +H++++ + LF +R P P+GVLD ++GT+
Sbjct: 3 ELLKEDDAPKKIGHIQFGLLSEDDIVRLSHVQIVNRELF-DLVKRKPTPYGVLDNKLGTS 61
Query: 64 QKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKK 123
K A C TCGL + +CVGHFGYI+L LPVFH+GY + I+ ILQ ICK C+ ++L E K+
Sbjct: 62 DKQAMCTTCGLSIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQ 121
Query: 124 SYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRA 183
Y RK N +M L +K+L + + + +C C + NGM+KKS G KI+HEKY+
Sbjct: 122 YYLRKMRNKKMDNLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKS--GAFKIIHEKYKG 179
Query: 184 KKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMN 243
K T+ + + + +A + N E+ + I +++PL LNLF++I +DI ++ M+
Sbjct: 180 K--TESLQDYYAL-YDDAIKYNPEMKSHIKKAQ-DDLNPLVALNLFKKISYQDIEIMNMD 235
Query: 244 VKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAG 303
+ RPE LILT + VPP+ IRPSV D +GTNEDDLTMK SEIL IN+ I ++ A
Sbjct: 236 PVIGRPERLILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHIRSNVDRA- 294
Query: 304 KCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRV 363
+ I EDWDYLQ A+YINS++ G+PL M+P K RGL QRLKGK GRFRGNLSGKRV
Sbjct: 295 EMSAIMEDWDYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTGRFRGNLSGKRV 354
Query: 364 DFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV 423
DFS RTVISPDPNL I EV VP +A +TYPERV N++ L++ V NGPD HPGANY+
Sbjct: 355 DFSGRTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYI 414
Query: 424 QQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQ 483
KK+LK+GNREK A ELK GD+VERH++DGD++LFNRQPSLHKLSIM H+A+V
Sbjct: 415 IYAD-GVKKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVM 473
Query: 484 PQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQN 543
P RT RFNECVCTPYNADFDGDEMN+HLPQTEEARAEA ILMG N
Sbjct: 474 PWRTLRFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTN-------------- 519
Query: 544 KSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPP 603
NL+TPRNGE L+AATQDF+T YLI++RD F+ E + A DA ID+PP
Sbjct: 520 --NLITPRNGEPLVAATQDFLTASYLISRRDAFY---ERYRFALMCTHFADANEHIDLPP 574
Query: 604 PAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELV 663
PAI+KP +LWTGKQIF +++RP+ + V N ET+ + Y+ N +C +D YV RNSEL+
Sbjct: 575 PAILKPVELWTGKQIFEVLLRPSVKSHVLCNFETRSRTYSKNLYMCPKDGYVYFRNSELM 634
Query: 664 CGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPG 723
CGS+DKS +G G K+S+F+IL+RD+ A M RLA++ + ++ ++GFS GI D+ P
Sbjct: 635 CGSIDKSIIGGGNKNSLFHILMRDFSPTIAANCMTRLAKLCARFLGDQGFSIGIPDIKPA 694
Query: 724 KKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKA 783
+ L K +++E+ Y KC ++ + E G+LQ GC+ME+T EA M LS IR+ K
Sbjct: 695 EDLDRKKREIIETAYKKCAVFLKDYESGSLQLSSGCSMEQTFEAKMNQTLSQIRDDCGKL 754
Query: 784 CFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSK 843
C +L N+PLIM GSKGSNINI+QMI CVGQQ +NG R+PNGF +R+ PHF+ +K
Sbjct: 755 CVNDLPNYNSPLIMGLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPHFKHFAK 814
Query: 844 IPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQY 903
P ++GFV NSFYTG+ PTEFFFHTMGGREGLVDTAVKTAETGY+QRRL+K+LEDL Y
Sbjct: 815 NPKSKGFVSNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHY 874
Query: 904 DMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNAEPLDGDGIV 963
D TVR++ G +VQF YG DGLDP ME KDRPVD R + V++ Q +N + I
Sbjct: 875 DYTVRDSIGGIVQFIYGDDGLDPAGMEAKDRPVDFLRAMMSVKSTRQCRNEPEMKPFEIR 934
Query: 964 LAAEETLALDDFKTSTDEFKNELLSF 989
E + F+ TD FKNE+ F
Sbjct: 935 KLVESIIDSSKFEACTDLFKNEIRVF 960
Score = 154 bits (373), Expect = 2e-35
Identities = 82/141 (58%), Positives = 98/141 (69%), Gaps = 2/141 (1%)
Query: 976 KTSTDEFKNELLSFLKATAGRVRALRARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQR 1035
K D+ + E + K + R++ L R+A Q+ R+T TQ+ FL +C KY R
Sbjct: 1037 KEENDKIEKERIEKEKESK-RLKLLGERFAN-EHVVNQIHRITKTQIELFLDICLDKYSR 1094
Query: 1036 GVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPI 1095
IEPGTAVGA+ AQSIGEPGTQMTLKTFHFAGVASMN+T GVPR+KEIINA++NISTPI
Sbjct: 1095 ARIEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPI 1154
Query: 1096 ITAELMQPYDQEFARRVKGRI 1116
ITA L YD AR V GRI
Sbjct: 1155 ITASLNCDYDIRSARIVAGRI 1175
Score = 42.3 bits (95), Expect = 0.076
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 1118 TSKLKVKPAEVTAVSAWAIKVTGEPSKSCGWLNMSLQQLGRQLPAVVVKGLPQVSRAVIA 1177
T LK+KP ++T + +++ + G L LQ L LPAV+VKG+P V+R VI+
Sbjct: 1226 TKGLKLKPEQITTNGDYKLRIVPPANIREGSLYY-LQFLKNNLPAVIVKGIPTVNRVVIS 1284
Query: 1178 -CDDSSEKPDL 1187
D+ E+ L
Sbjct: 1285 KVDEKQERYQL 1295
>UniRef50_UPI000049A544 Cluster: DNA-directed RNA polymerase III
largest subunit; n=1; Entamoeba histolytica
HM-1:IMSS|Rep: DNA-directed RNA polymerase III largest
subunit - Entamoeba histolytica HM-1:IMSS
Length = 1379
Score = 1011 bits (2503), Expect = 0.0
Identities = 528/1115 (47%), Positives = 718/1115 (64%), Gaps = 39/1115 (3%)
Query: 14 KISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCG 73
K+ + F + S + + + EV T++ Q R P P+GVLDRR+G + CETCG
Sbjct: 33 KVCDIQFTMFSQEEMNRESEFEV-TEHFLFQPNTRKPNPNGVLDRRLGVCDSLSVCETCG 91
Query: 74 LGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPE 133
+ EC GHF I L LPVFH+G+FR II +LQ +CK C +++L + Y R+ N +
Sbjct: 92 KRIEECSGHFAVINLELPVFHIGFFRPIIQVLQCVCKNCNRILLTNEERDFYLRRMRNKK 151
Query: 134 MSYLLKKNL-KAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVK 192
+ + L +A++ + K ++ CP C AING +KK G L++VH+KY + PT +
Sbjct: 152 TDTVARTYLVRALIAQCRKHYNSCPHCNAINGSIKK--YGNLRLVHDKYH-RDPTITEMN 208
Query: 193 KVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDL 252
+ F E+ + +K++ A IN+ +++ P +VL++FR + EDI + + + PE++
Sbjct: 209 EFYDGFEESIKLDKDINAFINNAQ-EDLDPRKVLSIFRSLIREDIETMDFDPDNAPPENM 267
Query: 253 ILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDW 312
ILT +PVPP+ IRPSV D +NEDDLT + EI+ ND I + + W
Sbjct: 268 ILTSVPVPPIAIRPSVAMDGGNASNEDDLTTQLKEIMECNDRIKEMIKRGASPYQYYDSW 327
Query: 313 DYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVIS 372
D L + +++INSE+ G KP R + QRLKGK GRFRGNL GKRVDFS RTVIS
Sbjct: 328 DQLTVAVSMFINSELPGCD---DKGKPLRAICQRLKGKHGRFRGNLLGKRVDFSGRTVIS 384
Query: 373 PDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV--QQRGLKT 430
PDPNL I+++GVP +A LTYPERV N+ LR+LV NG + +PG N + GL+
Sbjct: 385 PDPNLDIEQIGVPKLMAVKLTYPERVTKHNIDKLRQLVINGSNNYPGCNSIIGGSDGLRR 444
Query: 431 KKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRF 490
+K REK A++LK GD+VERHL D D+VLFNRQPSLH++SIMCHRAK+ P RT RF
Sbjct: 445 SMCIKLEMREKFAKDLKIGDIVERHLEDNDIVLFNRQPSLHRISIMCHRAKILPWRTLRF 504
Query: 491 NECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTP 550
NECVCTPYNADFDGDEMN+H+PQTEEARAE L+LM S NL TP
Sbjct: 505 NECVCTPYNADFDGDEMNLHVPQTEEARAECLMLMHS----------------AKNLQTP 548
Query: 551 RNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPR 610
R G+++IA TQDF+T YL+T +D F + E AC +A ID+P PA +KP+
Sbjct: 549 RTGQMIIAETQDFLTTSYLLTSKD-FVIEEEDMMQWACWFH--NAGTEIDLPTPAYLKPK 605
Query: 611 KLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGN-KDLCVQDSYVIIRNSELVCGSMDK 669
KLWTGKQ++ L ++PN+ V +L+ K Y+ K +CV+D ++ +NS+L+ G ++K
Sbjct: 606 KLWTGKQLYGLALKPNKHEGVNISLDVPSKLYSKEGKWMCVKDGWICFKNSQLLSGQIEK 665
Query: 670 STLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEA 729
S +GSG K+ +F+++LRD+G + + M ++R + ++ + GFS GI DVTP L +
Sbjct: 666 SIIGSGNKTGLFHLILRDYGTLESAKIMAHISRFCARFLGDYGFSIGISDVTPSADLTQM 725
Query: 730 KNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELH 789
K +L+ GY KCD +I + + G + Q G T E+TLEA++ +ELS IRE A K C EL
Sbjct: 726 KEELVSEGYKKCDQFIEDYKSGKQEVQAGSTPEQTLEALLNNELSQIRERAGKRCIEELK 785
Query: 790 PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARG 849
N+PL+MA SGSKGS INISQMIACVGQQ +NG RV +GF RSLPHF HS+ P A+G
Sbjct: 786 SDNSPLVMALSGSKGSVINISQMIACVGQQTVNGGRVSDGFISRSLPHFALHSRTPQAKG 845
Query: 850 FVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRN 909
FV+NSF+TGL TEFFFHTMGGREGLVD+AVKTAETGY+QRRL+K+LEDL + YD TVR+
Sbjct: 846 FVKNSFFTGLNATEFFFHTMGGREGLVDSAVKTAETGYMQRRLMKALEDLHVHYDGTVRS 905
Query: 910 ATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVR--AKCQDKNAEPLDGDGIVLAAE 967
A+ V++F+YG DGLDP +E P++L VL++++ K D+ P D E
Sbjct: 906 ASLTVIEFKYGDDGLDPLKVESDKYPINLESVLSNLQQNQKPDDEYITPESFD-----KE 960
Query: 968 ETLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYAGCGRAALQLERLTLTQLVRFLR 1027
+ K ++ +K ++ +FLK + + Y A L +T+ L F+
Sbjct: 961 YNAIISQTKIVSELWKQQIETFLKEKKEEMTEIYNHY-NQENAQHGLCGITIQTLKDFIS 1019
Query: 1028 VCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINA 1087
+CH K R V E GT VGALA QS+GEP TQM LKTFHFAGVASMNI GVPR+KEIINA
Sbjct: 1020 ICHEKGLRSVCEAGTPVGALAGQSMGEPSTQMVLKTFHFAGVASMNIALGVPRIKEIINA 1079
Query: 1088 SRNISTPIITAELMQPYDQEFARRVKGRICTSKLK 1122
S+ I TPI+TA+L+ D AR VKGRI ++LK
Sbjct: 1080 SKKIQTPIVTAKLVNSQDVTSARIVKGRIEATRLK 1114
>UniRef50_O94666 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=2; Dikarya|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Schizosaccharomyces pombe (Fission yeast)
Length = 1405
Score = 993 bits (2457), Expect = 0.0
Identities = 479/934 (51%), Positives = 642/934 (68%), Gaps = 29/934 (3%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
+ ++I H+ F ++ P + +EV ++L+ R PA HG LD MGT+ K NC
Sbjct: 9 IPKRIKHLQFGINGPEEFVKDGTVEVSRRDLYTMT-DRSPAEHGALDLHMGTSNKQINCA 67
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFI 130
TCG +A+C+GHFGY++L LPVFH+GYF+A +TILQ ICK+C+ V+L + K+ + +
Sbjct: 68 TCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQFLKDLR 127
Query: 131 NPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPI 190
P + L + + ++ K +C C+A+ G+VKK+ G LKI+HE++R + +
Sbjct: 128 RPGIDNLRRSQICKRINDHCKKMRRCSKCDAMQGVVKKA--GPLKIIHERFRYVRKSQDD 185
Query: 191 VKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPE 250
+ F EA ++ E+ ++ +++PL+VLNLF++I D LLGM+ + RPE
Sbjct: 186 EENFRHSFDEALKTIPELKMHLSKAH-DDLNPLKVLNLFKQITPVDCELLGMDPEHGRPE 244
Query: 251 DLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQE 310
+L+ +P PP+CIRPSV + T EDDLT+K +EI+ + +I L+ + E
Sbjct: 245 NLLWRYVPAPPVCIRPSVAQE--GATTEDDLTVKITEIIWTSSLIRAALSKGTPISNLME 302
Query: 311 DWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTV 370
W+++QL A+YINSEM G+ + P KP RG QRLKGKQGRFRGNLSGKRVDFS RTV
Sbjct: 303 QWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTV 362
Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKT 430
ISPDPNL+I +V VP +AKILT+PERV N + L+ + NGPDVHPGANYV R
Sbjct: 363 ISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVIDRESGF 422
Query: 431 KKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRF 490
K++L++GNR +IA +LK GD+VERHL D DVVLFNRQPSLHKLSIM H KV+P RT RF
Sbjct: 423 KRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKVRPWRTLRF 482
Query: 491 NECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTP 550
NECVC PYNADFDGDEMN+H+PQTEEA+ EAL LMG K+NLV+P
Sbjct: 483 NECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGI----------------KNNLVSP 526
Query: 551 RNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPR 610
RNGE +IAATQDFIT YL++ +DTF + + ++ DA+ ID+PPPAIIKPR
Sbjct: 527 RNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMM---DASTHIDLPPPAIIKPR 583
Query: 611 KLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNK----DLCVQDSYVIIRNSELVCGS 666
LWTGKQ+F+++M+PNR +V NL+ K ++++ K ++C +D Y++IRNSE++ G
Sbjct: 584 CLWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEMCPKDGYLMIRNSEIIAGV 643
Query: 667 MDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKL 726
+DKS +G G K S+FY++LRD+G A + RL++M + ++ NRGFS GI DV PGK L
Sbjct: 644 VDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPGKSL 703
Query: 727 IEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFR 786
K L+ Y+ D +I++ KG L+CQPG E TLEA + S LS +R+ + C
Sbjct: 704 SSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRDDVGEICMD 763
Query: 787 ELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPA 846
EL P N+PLIMA GSKGS IN+SQM+ACVGQQ ++GKRVP+GF+DRSLPHF ++SK P
Sbjct: 764 ELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKNSKHPL 823
Query: 847 ARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMT 906
A+GFV NSFY+GLTPTEF FH + GREGLVDTAVKTAETGY+ RRL+KSLEDL YD T
Sbjct: 824 AKGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYDGT 883
Query: 907 VRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLAR 940
VR++ +VVQF YG DGLDPTYMEG + V+ R
Sbjct: 884 VRSSNSDVVQFVYGDDGLDPTYMEGDGQAVEFKR 917
Score = 132 bits (320), Expect = 4e-29
Identities = 68/107 (63%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
Query: 1016 RLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNIT 1075
R+T QL F+ C KY R +EPGTAVGA+ AQSIGEPGTQMTLKTFHFAGVA+ T
Sbjct: 1019 RVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAQT-T 1077
Query: 1076 QGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRICTSKLK 1122
GVPR+KEIINA++ ISTPIIT +L+ D+ AR VKGRI + LK
Sbjct: 1078 LGVPRIKEIINAAKTISTPIITGQLINDRDERSARVVKGRIEKTYLK 1124
>UniRef50_Q9LVH0 Cluster: DNA-directed RNA polymerase; n=11;
Euphyllophyta|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1383
Score = 970 bits (2401), Expect = 0.0
Identities = 534/1131 (47%), Positives = 718/1131 (63%), Gaps = 55/1131 (4%)
Query: 3 KEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGT 62
K+ Y E KI + F+V S + ++A ++V N+ L D P +G+LD RMG
Sbjct: 11 KKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVW--NIGLYDHSFKPYENGLLDPRMGP 68
Query: 63 NQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLK 122
K + C TC C GH+GY++L LPV++VGYF I+ IL+ ICK C+ ++L E L
Sbjct: 69 PNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEKLY 128
Query: 123 KSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSK-----CPSCEAINGMVKKSSIGI-LKI 176
+ + RK NP M L K L V KK T + C C +NGMVKK + + I
Sbjct: 129 EDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFGIGI 188
Query: 177 VHEKYRAKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDED 236
H++ + I + + A K+ A IN L + P VL LF+R+ D+D
Sbjct: 189 SHDRSK-------IHGGEIDECKSAISHTKQSTAAINP-LTYVLDPNLVLGLFKRMSDKD 240
Query: 237 IPLLGMNVKLSRPEDLILTRLPVPPLCIRPSV-VSDIKAGTNEDDLTMKQSEILLINDVI 295
LL + RPE+LI+T + VPPL IRPSV + I++ NE+DLT + +I+L N +
Sbjct: 241 CELLYIAY---RPENLIITCMLVPPLSIRPSVMIGGIQS--NENDLTARLKQIILGNASL 295
Query: 296 ARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKK-PGRGLVQRLKGKQGRF 354
+ L+ + WD +Q+ A YINSE+ G QP++ P G++QRLKGK GRF
Sbjct: 296 HKILSQPTSSPKNMQVWDTVQIEVARYINSEVRGCQ--NQPEEHPLSGILQRLKGKGGRF 353
Query: 355 RGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGP 414
R NLSGKRV+F+ RTVISPDPNL+I EVG+P+ +A+ILT+PE V N++ LR+ V NGP
Sbjct: 354 RANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGP 413
Query: 415 DVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLS 474
+ +PGA V+ + + L R++IA EL G +V+RHL +GDVVLFNRQPSLH++S
Sbjct: 414 NKYPGARNVRYPD-GSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMS 472
Query: 475 IMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTV 534
IMCHRA++ P RT RFNE VC PYNADFDGDEMNMH+PQTEEAR EA+ LMG N
Sbjct: 473 IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQN----- 527
Query: 535 IIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPD 594
NL TP+NGE+L+A+TQDF+T +LIT++DTF+ ++ + + + G D
Sbjct: 528 -----------NLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMD 576
Query: 595 ATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTG-----NKDLC 649
+ ID+P P I+KP +LWTGKQIFS+++RPN V L K KN+ ++ +C
Sbjct: 577 S---IDLPTPTILKPIELWTGKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMC 633
Query: 650 VQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMM 709
+ D +V RNSEL+ G + K+TLG+G K ++ ILLRD+ A M RLA++++ ++
Sbjct: 634 INDGWVYFRNSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIG 693
Query: 710 NRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVM 769
GFS GI DV PG++L + + ++ GY +C I E +G LQ + G ++LEA +
Sbjct: 694 IHGFSIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEI 753
Query: 770 LSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNG 829
L++IRE KAC LH N+PLIM+Q GSKGS INISQM+ACVGQQ +NG R P+G
Sbjct: 754 TGILNTIREATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDG 813
Query: 830 FEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQ 889
F DRSLPHF R SK PAA+GFV NSFY+GLT TEFFFHTMGGREGLVDTAVKTA TGY+
Sbjct: 814 FIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMS 873
Query: 890 RRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKD-RPVDLARVLADVRAK 948
RRL+K+LEDL++ YD TVRNA+G ++QF YG DG+DP MEGKD P++ R+ V+A
Sbjct: 874 RRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQAT 933
Query: 949 CQDKNAEP-LDGDGIVLAAEETLAL-DDFKTSTDEFKNELLSFLKATAGR-VRALRARYA 1005
C ++ L + + EE L D + TD F L F+ + + Y
Sbjct: 934 CPPRSHHTYLSSEELSQKFEEELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYK 993
Query: 1006 GCGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFH 1065
G+ L + + V F+++C +Y+ IE GTA+G + AQSIGEPGTQMTLKTFH
Sbjct: 994 ASGQKYEILPLIYINMQV-FVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFH 1052
Query: 1066 FAGVASMNITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
FAGVASMNITQGVPR+ EIINAS+NISTP+I+AEL P + AR VKGRI
Sbjct: 1053 FAGVASMNITQGVPRINEIINASKNISTPVISAELENPLELTSARWVKGRI 1103
>UniRef50_A6SCV1 Cluster: DNA-directed RNA polymerase; n=19;
Fungi/Metazoa group|Rep: DNA-directed RNA polymerase -
Botryotinia fuckeliana B05.10
Length = 1468
Score = 924 bits (2286), Expect = 0.0
Identities = 459/946 (48%), Positives = 627/946 (66%), Gaps = 43/946 (4%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
+ ++ + F + S I IEV K L+ D R PHG +D R+GT+ K C+
Sbjct: 15 IPKRFKELKFGIQSNQDIVNQGVIEVSNKMLYNVDAGRTAIPHGPVDPRLGTSSKSGRCD 74
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFI 130
TC GL +C GHFG+++L LP FH+GY + II ILQ +CK CA+V+L ++ ++ + ++
Sbjct: 75 TCDKGLQDCNGHFGHVRLPLPAFHIGYLKLIIMILQNVCKTCARVLLTDAERRQFLKELR 134
Query: 131 NPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYR-------A 183
P + L + + ++++ + S+CP C A NG ++K I +++ H+KY A
Sbjct: 135 KPGIDNLKRTQICKKINEQCRKASQCPHCNATNGQIRK--ISPVRLAHDKYTKYNKSTAA 192
Query: 184 KKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMN 243
KK P + + F EAK+ N E+ + + +++ PL VLNLF+ I D LLG+N
Sbjct: 193 KKVVPPGMAEYQKSFEEAKKHNTELEKHVKK-VYEDLHPLRVLNLFKLITPSDCELLGIN 251
Query: 244 VKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAG 303
RPE + +P PP+CIRPSV D G+NEDD+T K +EI+ + ++ L
Sbjct: 252 PAEGRPEMFLWQFVPAPPICIRPSVQQD--GGSNEDDITTKLAEIVSMASLLRAALHKGQ 309
Query: 304 KCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK--KPGRGLVQRLKGKQGRFRGNLSGK 361
+ I E WD+LQL A+Y+NS++ G+ QP K RG QRLKGKQGRFRGNLSGK
Sbjct: 310 AVQTIMEQWDFLQLQIAMYVNSDVPGL---QQPGFGKAIRGFCQRLKGKQGRFRGNLSGK 366
Query: 362 RVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGAN 421
RVDFS RTVISPDPNL I EV VP+ VAK LTYPERV N++ LR+ V NGP+VHPGA
Sbjct: 367 RVDFSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRQCVINGPNVHPGAQ 426
Query: 422 YVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAK 481
+ ++ K LK+ R+ A+ LK GDVVERHL DGD+VLFNRQPSLHKLSIM H AK
Sbjct: 427 QIIKKDSNHKISLKFAKRDNEAKFLKIGDVVERHLEDGDIVLFNRQPSLHKLSIMSHYAK 486
Query: 482 VQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLE 541
++P RTFR NECVC PYNADFDGDEMN+H+PQTEEAR EA+ LMG
Sbjct: 487 IRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGV-------------- 532
Query: 542 QNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDM 601
K+NL TP+NGE +I+ATQDFIT YL++ ++ FF + + ++ DA + + +
Sbjct: 533 --KNNLSTPKNGEPIISATQDFITAAYLLSNKENFFDRKTFTNICMYMV---DANLHLQL 587
Query: 602 PPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGN-------KDLCVQDSY 654
P PAI+KP+ LWTGKQ+FS++MRPN++ + N++ K +++ + D+ D +
Sbjct: 588 PDPAILKPQALWTGKQVFSVLMRPNKQDNILVNVDAKCRDFVPSMVPKGFANDMEANDGW 647
Query: 655 VIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFS 714
++IRNSE++CG MDKST+GSG K SIFY++LRD+G + AV M RL+++++ Y+ N GFS
Sbjct: 648 LVIRNSEVMCGLMDKSTVGSGKKDSIFYVILRDYGPDAAVVAMNRLSKLSARYLTNMGFS 707
Query: 715 FGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELS 774
GI DV P +L ++K +L+ + Y +C+ I + TL+ G +MEETLEA + +LS
Sbjct: 708 IGISDVYPSAELNKSKARLIAAAYVECEQLIESFKNNTLEKSTGLSMEETLEAKLSGKLS 767
Query: 775 SIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRS 834
+R A K C R L+ +++PL+MA SGSKGS IN++QM+A VGQQ + G RV GF+DR+
Sbjct: 768 QVRGAAGKECLRTLYASSSPLVMANSGSKGSAINVAQMVALVGQQIIGGSRVQEGFQDRT 827
Query: 835 LPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVK 894
LPHF +HSK P A+GFV NSF+TGLTP EF FH M GREGLVDTAVKTAETGY+ RRL+K
Sbjct: 828 LPHFPKHSKQPPAKGFVANSFFTGLTPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMK 887
Query: 895 SLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLAR 940
SLEDL QYD TVR + G +VQF++G+DGLDP MEG PV+ R
Sbjct: 888 SLEDLSTQYDDTVRTSGGGIVQFQFGADGLDPLDMEGNAVPVNFKR 933
Score = 130 bits (315), Expect = 2e-28
Identities = 61/104 (58%), Positives = 77/104 (74%)
Query: 1013 QLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASM 1072
Q+ +++ T L +F +C KY R +EPG AVGA+ AQSIGEPGTQMTLKTFHFAGVA M
Sbjct: 1053 QVAKVSETTLKKFCELCLEKYSRAKVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGM 1112
Query: 1073 NITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
N+T GVPR+KEIINAS+ I+TP + L+ + E AR VK R+
Sbjct: 1113 NLTAGVPRIKEIINASKTIATPFVKCPLLNSKELEVARLVKARM 1156
>UniRef50_Q7RXJ6 Cluster: DNA-directed RNA polymerase; n=4;
root|Rep: DNA-directed RNA polymerase - Neurospora
crassa
Length = 1533
Score = 919 bits (2275), Expect = 0.0
Identities = 474/954 (49%), Positives = 615/954 (64%), Gaps = 44/954 (4%)
Query: 3 KEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGT 62
KEQ + + ++ + F V S I +EV L+ + R PHG LD R+GT
Sbjct: 10 KEQLADQ-LPKRFRALQFGVQSHQDIVNQGVLEVSDNLLYDVENGRRTFPHGPLDPRLGT 68
Query: 63 NQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLK 122
+ K CETC L L C GHFG+++L LPVFH+GY + I LQ ICK C+KV+L E K
Sbjct: 69 SSKTGTCETCNLPLQSCAGHFGHVRLPLPVFHIGYLKYIQATLQNICKTCSKVLLEEEPK 128
Query: 123 KSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYR 182
+ + P + L + + ++ + + CP C G+++K S+ +K+ H+K+
Sbjct: 129 AKFLKALRAPGIDNLKRSAILKKINDECRKQKTCPYCGDTQGVIRKLSV--MKLTHDKFS 186
Query: 183 ------AKKPTDPIVKKVL-MDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDE 235
A+K P+ K F +AK ++ + +M PL+VL LF++I E
Sbjct: 187 HFNKSTAQKKVPPVAKAAFDSSFIQAKTFTPDLEKHSKKAM-DDMDPLKVLKLFKKITAE 245
Query: 236 DIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVI 295
D LLG+N RPE + LP PP+CIRPSV + A +NEDD+T K SEI+L +
Sbjct: 246 DCELLGLNPSEGRPEMFLWQYLPAPPICIRPSVQQE--AASNEDDITSKLSEIILYAGHL 303
Query: 296 ARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK--KPGRGLVQRLKGKQGR 353
L I E W+++QL +Y+NS++ G+ QP KP RG QRLKGKQGR
Sbjct: 304 RESLLKGAALNTIMEQWEFIQLQVGMYVNSDVPGL---YQPGFGKPIRGFCQRLKGKQGR 360
Query: 354 FRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNG 413
FRGNLSGKRVDFS RTVISPDPNL I +V VP VAK LTYPERV N++ LR+ V NG
Sbjct: 361 FRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPERVAKNLTYPERVNRNNIEKLRKCVMNG 420
Query: 414 PDVHPGANYVQQRGLKTKKYLKYGN---REKIAQELKCGDVVERHLVDGDVVLFNRQPSL 470
P V PGA V +R K L +G+ RE+ A+ELK GDVVERHL DGD+VLFNRQPSL
Sbjct: 421 PKVWPGAQGVIKRDGGMKFNLNFGDESIREERARELKFGDVVERHLEDGDIVLFNRQPSL 480
Query: 471 HKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNT 530
HKLSIM HRAKV+P RTFR NECVCTPYNADFDGDEMN+HLPQTEEARAEA+ LMG N
Sbjct: 481 HKLSIMSHRAKVRPWRTFRLNECVCTPYNADFDGDEMNLHLPQTEEARAEAINLMGVQN- 539
Query: 531 AVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLL 590
NL+TP+NGE +IAATQDFIT YL++ +D F + + +L
Sbjct: 540 ---------------NLITPKNGEPIIAATQDFITAAYLLSSKDLFLDRKTFTYICTQML 584
Query: 591 AGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGN----K 646
G +D+PPP IIKP +LWTGKQIF+++MRPN++ V NLE K K Y
Sbjct: 585 LG---ETHLDLPPPTIIKPVELWTGKQIFNVLMRPNKQSPVLVNLEAKNKVYKAKPGELP 641
Query: 647 DLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASY 706
D+ + D Y+++RNSE++CG MDKST+G G K+S+FY++LRDWG E+A + M RLA++ +
Sbjct: 642 DMDIDDCYLVVRNSEVMCGRMDKSTVGGGKKNSVFYVILRDWGPEHAAQAMNRLAKLCAR 701
Query: 707 YMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLE 766
+ RGFS G+ DV P K L E K KL++ Y+ CD I + + G L+ PGC MEETLE
Sbjct: 702 TLTLRGFSIGVGDVYPSKDLTEHKAKLVQDAYALCDDLIAQFKSGRLEKAPGCNMEETLE 761
Query: 767 AVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRV 826
+ LS +R A C L N+PLIMA+SGSKGS+IN++QM+A VGQQ + GKRV
Sbjct: 762 NKISGILSKVRSQAGDYCVGHLSRNNSPLIMAKSGSKGSDINVAQMVALVGQQIIGGKRV 821
Query: 827 PNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETG 886
+GF+DR+L HF ++++ P ++GFV NSFYTGL PTEF FH + GREGLVDTAVKTAETG
Sbjct: 822 ADGFQDRTLFHFHKNARQPPSKGFVRNSFYTGLVPTEFLFHAISGREGLVDTAVKTAETG 881
Query: 887 YLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLAR 940
Y+ RRL+KSLEDL QYD TVR + G +VQF+YG+D LDP MEG +PVD R
Sbjct: 882 YMSRRLMKSLEDLSTQYDDTVRTSEGNIVQFQYGADRLDPADMEGNAKPVDFER 935
Score = 127 bits (307), Expect = 2e-27
Identities = 61/104 (58%), Positives = 80/104 (76%)
Query: 1013 QLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASM 1072
++ +++ L +F+ +C K+ + +EPG AVGA+ AQSIGEPGTQMTLKTFHFAGVA M
Sbjct: 1079 RVAKVSEATLRKFMNLCLSKFDKAKVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGM 1138
Query: 1073 NITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
+ITQGVPR+KEII AS+ ISTP+I+ EL D + AR VKG+I
Sbjct: 1139 SITQGVPRIKEIIGASKLISTPVISCELENNRDIKAARIVKGKI 1182
>UniRef50_P04051 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=9; Dikarya|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1460
Score = 919 bits (2273), Expect = 0.0
Identities = 470/949 (49%), Positives = 621/949 (65%), Gaps = 43/949 (4%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
++I + F+ S + I + +EV T++LF + R P +G LD +MG + C TC
Sbjct: 11 KRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECATC 70
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
LA C GHFG+++L LPVFH+GYF+A I ILQ ICK C+ ++L E+ K+ + + P
Sbjct: 71 HGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHELRRP 130
Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGI----LKIVHEKYR-AKKPT 187
+ L + + + + K +C C A+NG+VKK++ G LKI+H+ +R K +
Sbjct: 131 GVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVKKAAAGAGSAALKIIHDTFRWVGKKS 190
Query: 188 DPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMN--VK 245
P + ++ E N E+ + + +++PL+ LNLF++I D LLG++ V
Sbjct: 191 APEKDIWVGEWKEVLAHNPELERYVKR-CMDDLNPLKTLNLFKQIKSADCELLGIDATVP 249
Query: 246 LSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKC 305
RPE I LP PP+CIRPSV+ +NEDDLT+K +EI+ + +I L
Sbjct: 250 SGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISI 309
Query: 306 ELIQEDWDYLQLHAALYINSEMSGIPLAMQPK--------KPGRGLVQRLKGKQGRFRGN 357
+ E WDYLQL A+YINS+ + AM P KP RG QRLKGKQGRFRGN
Sbjct: 310 NNMMEHWDYLQLTVAMYINSD--SVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGN 367
Query: 358 LSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVH 417
LSGKRVDFS RTVISPDPNL I EV VP VAK+LTYPE+V N L+ L+ NGP+VH
Sbjct: 368 LSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVH 427
Query: 418 PGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMC 477
PGANY+ +R ++ L+YG+R K+A+ L+ GDVVERHL DGDVVLFNRQPSLH+LSI+
Sbjct: 428 PGANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILS 487
Query: 478 HRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIR 537
H AK++P RTFR NECVCTPYNADFDGDEMN+H+PQTEEARAEA+ LMG
Sbjct: 488 HYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGV---------- 537
Query: 538 VSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATM 597
K+NL+TP++GE +IAATQDFITG YLI+ +D+F+ ++ QL + + D
Sbjct: 538 ------KNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMM---SDGIE 588
Query: 598 RIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNK------DLCVQ 651
D+PPPAI+KP LWTGKQ+FSL+++PN V NL+ K K + K ++
Sbjct: 589 HFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNEMSQN 648
Query: 652 DSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNR 711
D +VIIR S+++ G MDKS LG G K S+FY +LRD+G + A M R+A++ + ++ NR
Sbjct: 649 DGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNR 708
Query: 712 GFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLS 771
GFS GI DVTP L + K +L+E Y KCD I KG L+ QPGC E+TLEA +
Sbjct: 709 GFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGG 768
Query: 772 ELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFE 831
LS +RE C EL NAPLIMA GSKGS +N+SQM+A VGQQ ++G RVP+GF+
Sbjct: 769 LLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQ 828
Query: 832 DRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRR 891
DRSLPHF ++SK P ++GFV NSF++GL+P EF FH + GREGLVDTAVKTAETGY+ RR
Sbjct: 829 DRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRR 888
Query: 892 LVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLAR 940
L+KSLEDL QYD TVR + +VQF YG DGLDP MEG +PV+ R
Sbjct: 889 LMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEGNAQPVNFNR 937
Score = 138 bits (333), Expect = 1e-30
Identities = 66/104 (63%), Positives = 82/104 (78%)
Query: 1013 QLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASM 1072
QL R++ + +FL + KY++ +EPGTA+GA+ AQSIGEPGTQMTLKTFHFAGVASM
Sbjct: 1058 QLYRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 1117
Query: 1073 NITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
N+T GVPR+KEIINAS+ ISTPII A L+ D+ AR VKGR+
Sbjct: 1118 NVTLGVPRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRV 1161
Score = 40.7 bits (91), Expect = 0.23
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 1141 EPSKSCGWLNMSLQQLGRQLPAVVVKGLPQVSRAVIACDDSSEK 1184
EPS++ + M QQL R LP VVVKGLP +SRAVI D ++
Sbjct: 1250 EPSENDVFYRM--QQLRRALPDVVVKGLPDISRAVINIRDDGKR 1291
>UniRef50_A2DEX5 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA polymerase
- Trichomonas vaginalis G3
Length = 1657
Score = 890 bits (2201), Expect = 0.0
Identities = 479/1082 (44%), Positives = 667/1082 (61%), Gaps = 45/1082 (4%)
Query: 50 PAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTIC 109
P G LD R+G K+ C+TCG C GHFG ++L LPV+++G++ AI+ L+ IC
Sbjct: 27 PKVGGTLDLRLGAASKNQICQTCGQPQENCPGHFGSLELVLPVYNIGFYPAILHCLKCIC 86
Query: 110 KECAKVMLPESLKKSYRRKFIN-PEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKK 168
K C+ ++LP S +KF + P + K + + K+ + + CP C AING VKK
Sbjct: 87 KTCSNILLPNEEINSRLKKFYSKPPQTVSAKIDRVKALMKECEKVTICPHCGAINGPVKK 146
Query: 169 SSIGILKIVHEKYRAKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNL 228
+ ++ I H + D + + L F + + +++ + +++PL L L
Sbjct: 147 TKTTLI-ITHN---VGQKNDKLREPFLSKFSKLDIKGDDYKKYLDN-ICDDITPLRALQL 201
Query: 229 FRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEI 288
F+ IP IPLL +S P D+I+T + +PP CIRP+V++ GTN+DDLT++ +
Sbjct: 202 FKAIPTRQIPLLLSGFSVSSPADMIITSIVIPPNCIRPAVIA-AGEGTNQDDLTVRLVDS 260
Query: 289 LLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRL 347
+ ND I + + + E W LQ + INSE + + K KP G++QRL
Sbjct: 261 VHFNDEIRKSIEVGRQASSTMELWSSLQQNVNSSINSEAADTAAKTKKKNKPVIGVIQRL 320
Query: 348 KGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLR 407
KGKQGRFR NLSGKRV++S RTVISPDPN+ + +V +PV +AKILT+P RV N + L
Sbjct: 321 KGKQGRFRTNLSGKRVNYSGRTVISPDPNVNVDQVVIPVSMAKILTFPTRVTKFNKKDLM 380
Query: 408 RLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQ 467
R V NGPD +PGAN + + K L YGN+E+ AQEL+ GD+VERHL+D D VLFNRQ
Sbjct: 381 RYVKNGPDKYPGANNIIKADTGFKLSLAYGNKEQRAQELREGDIVERHLLDNDTVLFNRQ 440
Query: 468 PSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGS 527
PSLH++SIM RAKV T RFNE VC P+NADFDGDEMN+HLPQT EA A+A LM
Sbjct: 441 PSLHRISIMGFRAKVMEWCTMRFNESVCAPFNADFDGDEMNVHLPQTLEAAADARYLMN- 499
Query: 528 HNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAA 587
V+ NL +PR GE+++A TQDF++G +++T+++ F S L +
Sbjct: 500 ------VLY---------NLFSPRAGEMIVAPTQDFLSGAFILTRKNVFLDYSHFTFLIS 544
Query: 588 CLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKD 647
+ D +D+PPPAI+KP +LWTGKQ+ SL++ PN++ ++ + K YTGNK+
Sbjct: 545 QIF---DNLEEVDIPPPAIVKPYQLWTGKQVVSLMIAPNKKTDLHFTHQVGNKEYTGNKE 601
Query: 648 LCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYY 707
+C +D YV ++ +V G ++KS +G G KS ++ I+ RD ++A M R+A+M+ Y
Sbjct: 602 MCKKDGYVSFLDNYMVSGVLEKSLIGGGPKS-LWAIMARDHSPKFAAVCMQRIAKMSCRY 660
Query: 708 MMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEA 767
+MNRGFS GI+DV P + L KN + Y C I E + G L+ PG T TLEA
Sbjct: 661 LMNRGFSIGIMDVRPDENLTNNKNAQISKTYQDCYDKIAEYDSGKLEAAPGMTKLATLEA 720
Query: 768 VMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVP 827
+ +LS +R K C EL P N PL+MA+SG+KGS+INI QM+AC+GQQ++ GKR+
Sbjct: 721 FLNGQLSELRNKIGKMCMAELSPINTPLVMAKSGAKGSDINICQMMACLGQQSVGGKRII 780
Query: 828 NGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGY 887
+ F DRS+PHF+ SK P ++GF+ +SFYTGLTP++FFFHTMGGREGLVD AVKTA+TGY
Sbjct: 781 DDFIDRSIPHFKHGSKDPISKGFIASSFYTGLTPSDFFFHTMGGREGLVDAAVKTAQTGY 840
Query: 888 LQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRA 947
+QRRL+KSLEDLV+ YD TVR + G +VQF YG DGLDP +E PVDL RV +
Sbjct: 841 MQRRLMKSLEDLVIAYDQTVRMSDGTIVQFTYGDDGLDPLNLETTYFPVDLNRVSQEYLF 900
Query: 948 KCQDKNAEPLDGDGIVLAAEETLALDDFK--------TSTDEFK-NELLSFLKATAGRVR 998
K + EPL ETL +D + EF + L ++ +
Sbjct: 901 KF---SQEPLMDQIEARERIETL-FNDIREEQQGRGLVRVPEFLIDRLKKYIDDLLEKYI 956
Query: 999 ALRARYAGCGRAALQLERLTL----TQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGE 1054
+Y G + R T+ + L F++ C H+ ++ + EPG VGA+A QSIGE
Sbjct: 957 KANDQYIGEDLSMDSYIRATIPFTKSFLEEFVKFCMHRCEKSMAEPGMTVGAVAGQSIGE 1016
Query: 1055 PGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKG 1114
P TQMTL++FHFAGVASMN+T GVPR++E++NA I TPIITA L+ D+ AR VKG
Sbjct: 1017 PATQMTLRSFHFAGVASMNVTLGVPRIEEVMNAVSEIKTPIITANLLSQRDEIAARIVKG 1076
Query: 1115 RI 1116
I
Sbjct: 1077 II 1078
>UniRef50_Q0V3B7 Cluster: DNA-directed RNA polymerase; n=2;
Ascomycota|Rep: DNA-directed RNA polymerase -
Phaeosphaeria nodorum (Septoria nodorum)
Length = 1467
Score = 888 bits (2198), Expect = 0.0
Identities = 474/992 (47%), Positives = 628/992 (63%), Gaps = 58/992 (5%)
Query: 2 PKEQYRETYVGR---KISHVTFNVDSPSLIQQSAHIEVITKNLF----LQDGQRVPAPHG 54
P+ ++ V R +I H+ F + S I A IEV +N++ D R +G
Sbjct: 4 PRTSAKQQVVDRIPARIKHIQFGIYSNQDIVNQAVIEVSDRNVYDLTPAADNTRALTANG 63
Query: 55 VLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAK 114
+D MG + K C TCG L +C GHFG+I+L LP FHVGY + II +L ICK+C++
Sbjct: 64 PMDPLMGISSKTGECGTCGEKLDKCNGHFGHIKLALPAFHVGYLKHIIEVLNCICKDCSR 123
Query: 115 VMLPESLKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGIL 174
V+L E ++ Y R P+M L + + V + + CP C+A+ G V+K L
Sbjct: 124 VLLDEVERRRYLRSMRRPDMDTLRRTAISKKVLEDCRKKKTCPYCDALQGTVRKVPGHPL 183
Query: 175 KIVHEKYRA-----KKPTDPIVKKVLMD--FHEAKESNKEVAAMINSGLVKEMSPLEVLN 227
KI+H +Y A K P K+ D F AK +N ++ + V +M PL LN
Sbjct: 184 KIIHNRYDAFNRSTAKTKKPPAGKIEFDQSFETAKAANPDLDKHLKKA-VDDMHPLRTLN 242
Query: 228 LFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSE 287
LF++I ED LL M + +RPE LI +PVPP+ +RPSV+ + G EDD+T K +
Sbjct: 243 LFKKISPEDCELLAMIPEDARPEMLIWEYMPVPPVALRPSVMQE--GGATEDDVTNKIGD 300
Query: 288 ILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRL 347
I I+ +I LA +++ E WD+LQL A+YINS+ G+ +K RG QRL
Sbjct: 301 ICQISSIIRAGLARGFPLQILMEQWDFLQLQIAMYINSDAPGLK-QQGLQKTMRGFSQRL 359
Query: 348 KGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLR 407
KGK GRFR NLSGKRVDFS RTVI PDPNL I EV VP VAKILTYPE+V N++ L+
Sbjct: 360 KGKGGRFRQNLSGKRVDFSGRTVIGPDPNLSIDEVAVPQRVAKILTYPEKVTRYNIKKLQ 419
Query: 408 RLVCNGPDVHPGANYV-QQRG----------LKTKKYLKYGNR-EKIAQELKCGDVVERH 455
+LV NG + +PGANY+ + G + ++ K G+R + A L+ GDVVERH
Sbjct: 420 KLVLNGANKYPGANYILKDLGPDQDPRKVSLIALSRHDKKGDRLQGPAAALRFGDVVERH 479
Query: 456 LVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTE 515
L DGD+VLFNRQPSLHKLSI+ HRAK++P RTFR NECVC PYNADFDGDEMN+H+PQTE
Sbjct: 480 LEDGDIVLFNRQPSLHKLSILSHRAKIRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTE 539
Query: 516 EARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDT 575
EAR EA LMG K NL TP+NG +IAA QDFIT ++++ +
Sbjct: 540 EARTEATELMGV----------------KYNLATPKNGTPIIAAIQDFITAAFILSNKSN 583
Query: 576 FFTKSEAQQLAACLLAG-----PDAT--MRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRR 628
F+ + Q+ + G PD + I++PPP I KP+ LWTGKQ+F+L+MRPN++
Sbjct: 584 FYDRRTFCQIVNYMFTGEGAYDPDTGKYLPIEIPPPVIWKPQALWTGKQVFNLLMRPNKQ 643
Query: 629 CEVKANLETKGKNYTGNK----DLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYIL 684
V NLE K Y + DL D+Y+IIRNSE++CG MDKST+G G K S+FY++
Sbjct: 644 SRVLVNLEAGCKQYKPVQGRAPDLDENDAYLIIRNSEVMCGVMDKSTVGDGKKESVFYVM 703
Query: 685 LRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGY 744
+RD+G E+AV+GM RLAR+++ ++ N GFS GI DVTPG+ L + K L+E Y+KCD
Sbjct: 704 MRDFGPEHAVQGMNRLARLSARWLTNNGFSLGISDVTPGEVLNQKKQALVEEAYAKCDKL 763
Query: 745 ILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKG 804
I + ++G LQ GC E+T+E + LS +R+ A CF EL N+PL+MA+ GSKG
Sbjct: 764 IKDFKEGKLQRAAGCDEEQTMEVQIGGILSGVRQAAGDICFEELSRWNSPLLMAKCGSKG 823
Query: 805 SNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEF 864
SNIN+SQM+A VGQQ + G RV +GF R+LPHF + ++ PAA+GFV NSFY+GLTP+EF
Sbjct: 824 SNINVSQMVASVGQQMIGGARVADGFHHRTLPHFPKAARQPAAKGFVSNSFYSGLTPSEF 883
Query: 865 FFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGL 924
FH M GREGLVDTAVKTAETGY+ RRL+KSLEDL QYD TVRN++G VVQF+YG D L
Sbjct: 884 IFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDDTVRNSSGTVVQFQYGDDNL 943
Query: 925 DPTYMEGKDRPVDLARVLADVRAKCQDKNAEP 956
DP MEG+ +PV R + D N+EP
Sbjct: 944 DPVDMEGRAQPVAFDRTFSHAITSTWD-NSEP 974
Score = 113 bits (271), Expect = 4e-23
Identities = 58/103 (56%), Positives = 71/103 (68%), Gaps = 6/103 (5%)
Query: 1014 LERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMN 1073
+ +++ T L F+ +C KY R ++PG AVGA+ AQSIGEPGTQMTLKTFHFAGVA
Sbjct: 1073 IAKISQTALDTFIDLCLTKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFHFAGVA--- 1129
Query: 1074 ITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
GVPR+KEIINAS ISTP+IT L + AR VK R+
Sbjct: 1130 ---GVPRIKEIINASSTISTPVITCVLSNKISESAARIVKARV 1169
>UniRef50_Q8SRM3 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA polymerase
- Encephalitozoon cuniculi
Length = 1349
Score = 867 bits (2144), Expect = 0.0
Identities = 506/1139 (44%), Positives = 684/1139 (60%), Gaps = 73/1139 (6%)
Query: 4 EQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTN 63
++ E + +I ++F++ SP I + E+ +K+L+ R P P+G LD R+G
Sbjct: 36 KKVEEDEIDIRIRRISFSLLSPQEISDLSVHEISSKDLY-DISTRAPLPNGPLDLRLGVG 94
Query: 64 QKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKK 123
K C TCG GLA C+GHFG ++L LPVF+VG + I+ L +CK C ++L E K
Sbjct: 95 NKKDKCATCGEGLATCIGHFGEVRLVLPVFNVGLIKNTISTLNCLCKSCGSILLNEKKKI 154
Query: 124 SYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRA 183
+++K K L+ +V + K + C C NG +KK+ G +IVHE
Sbjct: 155 YFKKKLRESSGGNDTKLILRRIV-AECKKVNVCFVCSFRNGQIKKT-FGF-RIVHEVEDL 211
Query: 184 KKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMN 243
+K K+ + + ++S +E++PL LN+F + ++D LLG
Sbjct: 212 EK--------------RKKDRGSKGSDGVHSSCCEEINPLVALNVFNMMKEDDYELLGF- 256
Query: 244 VKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAG 303
L P LI+ + VPP CIRPSV D + GTNEDD+T+K SEI+ N V+ +
Sbjct: 257 --LESPSRLIIQNVIVPPSCIRPSVSMDDE-GTNEDDITIKISEIVHTNKVLREGIEKGN 313
Query: 304 KCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRV 363
LI EDWD+LQL AL INSE+ I + P +P RG+VQRLKGK GRFR NLSGKRV
Sbjct: 314 PLNLINEDWDHLQLQCALLINSELPQIGI---PGQPVRGIVQRLKGKNGRFRCNLSGKRV 370
Query: 364 DFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV 423
DFS RTVISPDPNL I+EVG+P +AKILT ERV N + L+ LV NGP+ +PGANYV
Sbjct: 371 DFSGRTVISPDPNLSIEEVGIPERMAKILTISERVTRLNRRKLQALVLNGPENYPGANYV 430
Query: 424 QQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQ 483
G K K++L YG R+ ELK G+VVERHL+DGD+VLFNRQPSLH++SIM H+ +V
Sbjct: 431 V--GEKFKRFLMYGKRDI---ELKYGEVVERHLMDGDMVLFNRQPSLHRMSIMSHKVRVH 485
Query: 484 PQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQN 543
+T RFNECVCTPYNADFDGDEMN+H+PQTE+ARAEA +LM N
Sbjct: 486 RNKTLRFNECVCTPYNADFDGDEMNVHVPQTEKARAEASVLMSVSN-------------- 531
Query: 544 KSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPP 603
N+VTPR+GE ++AATQDFITG YLIT +DTFF + QL + + R+ + P
Sbjct: 532 --NIVTPRHGEPIVAATQDFITGLYLITGKDTFFDRERFGQLVSYF-----SEARVGVKP 584
Query: 604 PAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETK-------GKNYTGNKDLCVQDSYVI 656
AI KP +L+TGKQ+ ++++ + ++ N T GKN + D V
Sbjct: 585 -AIRKPVELFTGKQLIEVLIKDSFTASIERNAVTGNMAVSLVGKNRSFKTHDDPNDGSVA 643
Query: 657 IRNSELVCGSMDKSTLGSGTK-SSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSF 715
I ++ G +DKS +G K S+ Y +++ AVR M + ++ S Y+ GFS
Sbjct: 644 ILDNSYYFGRLDKSIVGGENKRDSLIYAIMKV-SSMAAVRAMNSITKLCSRYLGETGFSI 702
Query: 716 GIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSS 775
G+ DV PG L + K ++ GY++C+ ILE K +P EE LE + S L+
Sbjct: 703 GLDDVQPGPILRQKKEMVVRRGYAECESKILEYSK-----KPEAN-EEMLEMEISSILNR 756
Query: 776 IRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSL 835
IRE C +EL N+P IM GSKGS IN+SQM+ACVGQQ ++G R+PNG ++R L
Sbjct: 757 IREECGSICIKELGIRNSPNIMQACGSKGSKINVSQMVACVGQQIVSGTRIPNGMDERCL 816
Query: 836 PHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKS 895
PHF+R S+ P ++GFV NSF+ GLT EFFFH + GREGLVDTAVKTAETGY+QRRL+K+
Sbjct: 817 PHFKRGSRTPESKGFVLNSFFDGLTSPEFFFHAVSGREGLVDTAVKTAETGYMQRRLMKA 876
Query: 896 LEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNAE 955
LEDL +QYD +VRN+ EVVQF YG D +DP EG D ++L +V +RAK ++
Sbjct: 877 LEDLSIQYDGSVRNSNMEVVQFAYGEDQIDPAMSEG-DESINLEQVF--LRAKSSFLHSL 933
Query: 956 PLDGDGIVLAAEETLALDDFKTSTDE-FKNELLSFLKATAGRVRALRARYAG--CGRAAL 1012
D +E +D + T + + E ++ + +R + +++ C
Sbjct: 934 GPSPDLYSSWLDEHGTIDILRRLTPKGYPFEHIANRRFVGSLLRFMESKHEDKFCFGGTF 993
Query: 1013 QLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASM 1072
L+ + F + K ++EPGT VGA+A QSIGEPGTQMTLKTFHFAGVASM
Sbjct: 994 YRYFLSKDFIETFFSMVSQKMMNLIVEPGTTVGAIAGQSIGEPGTQMTLKTFHFAGVASM 1053
Query: 1073 NITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRICTSKLKVKPAEVTAV 1131
NIT GVPR+KEIINA NISTPII AEL P+D +KGR+ LK + +T V
Sbjct: 1054 NITLGVPRLKEIINAVCNISTPIINAELDDPHDLFRTEVIKGRLDRISLKDVCSSLTEV 1112
>UniRef50_Q9VXP9 Cluster: DNA-directed RNA polymerase; n=4;
Diptera|Rep: DNA-directed RNA polymerase - Drosophila
melanogaster (Fruit fly)
Length = 1304
Score = 841 bits (2081), Expect = 0.0
Identities = 404/627 (64%), Positives = 484/627 (77%), Gaps = 21/627 (3%)
Query: 1 MPKEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRM 60
MPKEQ+R + + +KISHV F + IQQ A + +I+KNL+ QR P P+GVLDRRM
Sbjct: 1 MPKEQFRASALNKKISHVQFGISGADEIQQEALVRIISKNLY--QAQRQPVPYGVLDRRM 58
Query: 61 GTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPES 120
G + KDA CETCG GL EC+GHFGY+ L LPVFH+G+FR+ I ILQ ICK CA VML
Sbjct: 59 GISTKDAMCETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPE 118
Query: 121 LKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEK 180
++ Y +K NP SYL KK L + KAK +KCP C + NG VKK G+LKI+H+
Sbjct: 119 DRQLYEKKLHNPNFSYLGKKALHVQMLAKAKKVTKCPHCGSPNGGVKKGP-GLLKILHDP 177
Query: 181 YRAKKPTDPIVKKVLMDFHEAKESNKEVAAMI-NSGLVKEMSPLEVLNLFRRIPDEDIPL 239
Y+ +K D + + + + ++N+++ + + N +E++PL VL+LF +IP D+ L
Sbjct: 178 YKGRK-MDSLFTSNMNEMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVAL 236
Query: 240 LGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHL 299
LGM + P+ LI+TR+ VPP CIRPSV+S++KAGT EDDLTMKQSEILLINDVI RH+
Sbjct: 237 LGMCSHDAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHM 296
Query: 300 ASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLS 359
A+ GK ELI EDWD+LQLH ALY +SE+SGIP+ M PKK RG+VQRLKGKQGRFR NLS
Sbjct: 297 ATGGKIELIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLS 356
Query: 360 GKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG 419
GKRVDFS RTVISPDPNL I +VGVPV VAKILTYPERV PAN++ +R LV NGP +HPG
Sbjct: 357 GKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPG 416
Query: 420 ANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHR 479
ANYVQQRG KKYL YGNREK+AQELKCGDVVERHL DGD+VLFNRQPSLHK+SIMCHR
Sbjct: 417 ANYVQQRGSSFKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHR 476
Query: 480 AKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVS 539
AKVQPQRTFRFNEC CTPYNADFDGDEMN+HLPQTEEARAEALILMG
Sbjct: 477 AKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMG------------- 523
Query: 540 LEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRI 599
N+SNLVTP+NGE+LIAATQDFITGGYL+TQ++ F TK EA QLAAC LA D+TM I
Sbjct: 524 ---NQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHI 580
Query: 600 DMPPPAIIKPRKLWTGKQIFSLIMRPN 626
+PPPA++KPR+LWTGKQ+FSL+MRPN
Sbjct: 581 KLPPPALLKPRRLWTGKQMFSLLMRPN 607
Score = 547 bits (1349), Expect = e-154
Identities = 268/407 (65%), Positives = 317/407 (77%)
Query: 710 NRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVM 769
NRGFSFGI DVTP KKL++ K LL +GY+KC+ YI ++ GTLQCQPGCT EETLE+VM
Sbjct: 612 NRGFSFGISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVM 671
Query: 770 LSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNG 829
L ELS+IRE AAK CF ELHPTN+ LIMA SGSKGSNINISQMIACVGQQA++GKRVPNG
Sbjct: 672 LRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNG 731
Query: 830 FEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQ 889
FE+R+LPHFERHS IPAARGFV+NSFY+GLTPTEFFFHTM GREGLVDTAVKTAETGYLQ
Sbjct: 732 FENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQ 791
Query: 890 RRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKC 949
RRLVK LEDLV+ YD TVRNA E+V YG DGLDP ME +++PVDL ++RA+
Sbjct: 792 RRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRNKPVDLVHQYDNLRAQH 851
Query: 950 QDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYAGCGR 1009
PL+ + + A E L +F + D+FK ++ + + + R+ L+ RY C
Sbjct: 852 PQGKDRPLNAEEMSEALETLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQKRYEKCID 911
Query: 1010 AALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGV 1069
Q+E LT QL++F+R + +Y R V EPGTAVGA+AAQSIGEPGTQMTLKTFHFAGV
Sbjct: 912 LCHQIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGV 971
Query: 1070 ASMNITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
ASMNITQGVPR+ EIINA++ ISTPIITAEL + EFAR+VK RI
Sbjct: 972 ASMNITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARI 1018
Score = 49.6 bits (113), Expect = 5e-04
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 1116 ICTSKLKVKPAEVTAVSAWAIKVTGEPSKSCGWLNMSLQQLGRQLPAVVVKGLPQVSRAV 1175
I S+++VKP +V V++ + V + +N L +L L VVV GLP ++RAV
Sbjct: 1066 ILKSRMRVKPTQVEVVASQSRIVVRVEATRTSTINAELARLALSLQNVVVAGLPNINRAV 1125
Query: 1176 IACDDSSEKP 1185
IA DD+ + P
Sbjct: 1126 IAVDDARQPP 1135
>UniRef50_Q7YYV9 Cluster: DNA-directed RNA polymerase; n=3;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum
Length = 1907
Score = 793 bits (1962), Expect = 0.0
Identities = 426/957 (44%), Positives = 588/957 (61%), Gaps = 67/957 (7%)
Query: 1 MPKEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRM 60
+ KE + R I V F+ I +SAH+EV+ + ++ + +P GVLD R+
Sbjct: 59 LSKENVVNVFKRRNIEAVEFSAMGKDEIARSAHMEVLHREIY-RPMTNIPLQGGVLDSRL 117
Query: 61 GTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPES 120
G ++ DA C +CG L C GH+GYI L PVFHVGYF+ + +L ICK C +L
Sbjct: 118 GAHRADAQCSSCGGTLKTCGGHWGYIDLQQPVFHVGYFKHLYGVLCCICKSCGAFLLKGE 177
Query: 121 LKKSYRRKFINPEMSYLLKKNLKAVVHK---KAKTFSKCPSCEAINGMVKKSSIGILKIV 177
K+ + + + SY + + + K + K CP C + G ++
Sbjct: 178 EKRQHLARL---KQSYSIAHSYRLQFRKLVERCKKVKTCPRCMSQQGQLR---------- 224
Query: 178 HEKYRAKKPT-DPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDED 236
R +PT D +K H K KE V++++P+ V L R+P +D
Sbjct: 225 ----RTIRPTLDQFMKLT----HTIKVDGKEY--------VEDLTPIFVQTLLERVPYQD 268
Query: 237 IPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIA 296
+ +L + +P +L+++RLPVPP CIRPSV ++G+NEDDLT+ SEI +N++I
Sbjct: 269 LDIL----ETFKPGNLLISRLPVPPNCIRPSVTMG-ESGSNEDDLTVILSEITDLNNIIK 323
Query: 297 RHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK---KPGRGLVQRLKGKQGR 353
+ S + + +W++LQL IN++ G+ + K K GRG+ QRLKGK+GR
Sbjct: 324 SQMKSGFQTFQLLGNWEFLQLQCTRLINADAPGVNQLLASKNIPKAGRGVCQRLKGKEGR 383
Query: 354 FRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNG 413
FRGNLSGKRVDFS RTVISPDPN+++ EV VP+ +AK LTYPERV N+ LR V NG
Sbjct: 384 FRGNLSGKRVDFSGRTVISPDPNIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNG 443
Query: 414 PDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKL 473
D+ PGA YV + +K L+Y NR +++ L+ GD+VERH+ GD+VLFNRQPSLH+L
Sbjct: 444 HDIWPGACYVYKSN-GSKSSLRYANRRVVSERLEIGDIVERHMKTGDIVLFNRQPSLHRL 502
Query: 474 SIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVT 533
SIM H+ V P RTFRFNEC C PYNADFDGDEMN+HLPQ E AR+E+ LMG N
Sbjct: 503 SIMSHKVVVMPWRTFRFNECACAPYNADFDGDEMNLHLPQNELARSESKHLMGLMN---- 558
Query: 534 VIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGP 593
NLVTPRNGE LIAATQDF+ G Y++T RD F T+ + Q C +
Sbjct: 559 ------------NLVTPRNGEPLIAATQDFLLGMYVLTGRDIFLTRDQFSQY-CCHFSNG 605
Query: 594 DATMRIDMPPPAIIKPRKLWTGKQIFSLIMRP--NRRCEVKANLETKGKNYTGN---KDL 648
M ++PPP I+KP +LWTGKQ+F++I+RP N + + + E K ++Y KDL
Sbjct: 606 QIPM--ELPPPTILKPVELWTGKQVFNMILRPNSNEKERIDVSFELKERDYDSKSDLKDL 663
Query: 649 CVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYM 708
C + YV++R+SEL+ G++ K LG G+K +F+ +L + + + M R++R S Y+
Sbjct: 664 CPNEGYVVVRHSELLAGAIGKKVLGGGSKEGLFFYILLENNAKKSSECMGRISRFVSRYL 723
Query: 709 MNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAV 768
N+G + GI DVTP +L+ AK LLE GY + I EKG L PG ++E+TLE
Sbjct: 724 ANKGMTIGIDDVTPNAELLVAKKNLLEDGYQRVQDEINSYEKGKLTPHPGLSLEDTLELK 783
Query: 769 MLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPN 828
+ L IR A KA L P+N PL+M SG+KG INI+QM+ACVGQQ + G+R+ N
Sbjct: 784 VKKILDDIRNEAGKASHISLPPSNKPLLMYLSGAKGQLINIAQMVACVGQQNVAGQRIQN 843
Query: 829 GFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYL 888
GF +R+LPHF+ + +RGFV NSF++GL P EFFFHTM GREGLVDTAVKTAETGY+
Sbjct: 844 GFTNRTLPHFKMNCVDGRSRGFVGNSFFSGLQPDEFFFHTMSGREGLVDTAVKTAETGYM 903
Query: 889 QRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADV 945
QRRLVK+LEDL ++YD TVR + G+++QF YG DGL+P ME K V+ ++ +
Sbjct: 904 QRRLVKALEDLCIKYDQTVRTSDGQIIQFIYGDDGLNPMLMEEKLELVNFGKLFKHI 960
Score = 132 bits (318), Expect = 7e-29
Identities = 64/105 (60%), Positives = 78/105 (74%)
Query: 1017 LTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQ 1076
+T+ QL F++ KY + + EPG AVGA+AAQSIGEPGTQMTLKTFHFAGVASMN+T
Sbjct: 1473 ITIRQLYEFIKASWSKYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTL 1532
Query: 1077 GVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRICTSKL 1121
GVPR+KEIINA+ I TPII A+L D +A+ VKG I + L
Sbjct: 1533 GVPRIKEIINAATKILTPIIEAKLENDSDFNYAQIVKGSIVKTLL 1577
>UniRef50_P08968 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=7; Trypanosomatidae|Rep: DNA-directed RNA
polymerase III subunit RPC1 - Trypanosoma brucei brucei
Length = 1530
Score = 756 bits (1870), Expect = 0.0
Identities = 407/904 (45%), Positives = 561/904 (62%), Gaps = 37/904 (4%)
Query: 53 HGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKEC 112
+GV D R+G + + CETCGL ECVGH G+I L PVFH+G+F ++ I +TICK C
Sbjct: 58 YGVNDARLGVCDRLSICETCGLNSIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRC 117
Query: 113 AKVMLPESLKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIG 172
+ V+L ++ Y+R+ + + L + L + A C C +NG+V++ +
Sbjct: 118 SHVLLDDTEIDYYKRRLSSSSLEPLQRTMLIKTIQTDAYKTRVCLKCGGLNGVVRR--VR 175
Query: 173 ILKIVHEKYRAKKPTDPIVKKVLMDFHEAKESN----KEVAAMINSGLVKEMSPLEVLNL 228
+++VHEKY + ++ F +A+ +V + + P+ V L
Sbjct: 176 PMRLVHEKYHVEPRRGEGPRENPGGFFDAELRTACAYNKVVGECREFVHDFLDPVRVRQL 235
Query: 229 FRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEI 288
F +P ++ LLG+ +S P DL++T L VPP+ +RP + +DDLT + ++I
Sbjct: 236 FLAVPPGEVILLGLAPGVS-PTDLLMTTLLVPPVPVRPRGCAGTTT-VRDDDLTAQYNDI 293
Query: 289 LLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLK 348
L+ D + A + E W+ LQ+ AA ++S + G P ++ + QRLK
Sbjct: 294 LVSTDTMQDGSLDATR---YTETWEMLQMRAARLLDSSLPGFPPNVRTSDL-KSYAQRLK 349
Query: 349 GKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRR 408
K GRFR NLSGKRVD+S R+VISPDPNL + E+ VP+HVA++LTYP+RVF AN + +RR
Sbjct: 350 SKHGRFRCNLSGKRVDYSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRR 409
Query: 409 LVCNGPDVHPGAN--YVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNR 466
LV NGP VHPGA Y+ Q G K K +R ++A L GD+VERH+++GD+VLFNR
Sbjct: 410 LVRNGPHVHPGATTVYLAQEGSK-KSLKNERDRHRLAARLAVGDIVERHVMNGDLVLFNR 468
Query: 467 QPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMG 526
QPSLH++S+M HRA+V P RTFRFNEC C PYNADFDGDEMN+H QTE+ARAEAL LM
Sbjct: 469 QPSLHRVSMMAHRARVLPFRTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQLM- 527
Query: 527 SHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLA 586
+TA N+++ +NGE +IA TQDF+ YL+T RD FF + E Q+
Sbjct: 528 --STA-------------RNIISAKNGEPIIACTQDFLAAAYLVTSRDVFFDRGEFSQMV 572
Query: 587 ACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYT-GN 645
+ L GP R +P PAI+KP +LWTGKQ+F LI+RP+ +V + E K YT
Sbjct: 573 SHWL-GPVTQFR--LPIPAILKPVELWTGKQLFELIVRPSPEVDVLLSFEAPTKFYTRKG 629
Query: 646 KDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMAS 705
K C ++ YV +S + G +DK LG G K +F L G Y R M R+A+ S
Sbjct: 630 KHDCAEEGYVAFLDSCFISGRLDKKLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTS 689
Query: 706 YYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETL 765
Y+ N GFS G+ DV P +L + K +L CDG I + G + PG T++++L
Sbjct: 690 RYLTNYGFSLGLGDVAPTPELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSL 749
Query: 766 EAVMLSELSSIRELAAKACFRELH-PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGK 824
EA + +ELS +R+ A + L N PLIM QSGSKGS +NI+QM+ACVGQQ ++GK
Sbjct: 750 EARLNTELSKVRDECGTAAVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGK 809
Query: 825 RVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAE 884
R+ + F+DRSLPHF R + PAARGFV NSFY+GL+PTEFFFHTM GREGLVDTAVKTAE
Sbjct: 810 RILDAFQDRSLPHFHRFEEAPAARGFVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAE 869
Query: 885 TGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKD-RPVDLARVLA 943
TGY+ RRL+K++E+L ++YD TVRN G+V+Q R+G DGLDP MEG P++L +
Sbjct: 870 TGYIYRRLMKAMENLSVRYDGTVRNTKGDVIQLRFGEDGLDPQLMEGNSGTPLNLEQEWL 929
Query: 944 DVRA 947
VRA
Sbjct: 930 SVRA 933
Score = 122 bits (293), Expect = 8e-26
Identities = 58/92 (63%), Positives = 73/92 (79%), Gaps = 2/92 (2%)
Query: 1012 LQLERLTLTQ--LVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGV 1069
LQ E L LT+ + RF+ C KY R EPGT GA+AAQS+GEP TQMTL+TFHFAGV
Sbjct: 1111 LQTELLPLTRGMVTRFIAQCASKYLRKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGV 1170
Query: 1070 ASMNITQGVPRVKEIINASRNISTPIITAELM 1101
ASM+ITQGVPR+ E+INA+RNI+TP++TA ++
Sbjct: 1171 ASMSITQGVPRLVEVINANRNIATPVVTAPVL 1202
>UniRef50_A7AP17 Cluster: RNA polymerase Rpb1, domain containing
protein; n=1; Babesia bovis|Rep: RNA polymerase Rpb1,
domain containing protein - Babesia bovis
Length = 1541
Score = 754 bits (1864), Expect = 0.0
Identities = 418/934 (44%), Positives = 570/934 (61%), Gaps = 66/934 (7%)
Query: 3 KEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGT 62
KE + + I V F+V +I + + ++++ + L+ + P P GVLD ++G+
Sbjct: 80 KELVKSSVTRCTIEGVQFDVMGSEVISRISELQIMKRELY-DNSNNEPLPLGVLDLKLGS 138
Query: 63 NQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLK 122
N+ + C TCG L +CVGH+G+IQL +PVFH+G+F+ I IL ICK CA ++LPE+
Sbjct: 139 NRGGSLCHTCGKDLKQCVGHWGHIQLQMPVFHIGFFKYTIQILYCICKRCAFLLLPENTV 198
Query: 123 K----SYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVH 178
K ++RR+ +P + LL K + ++ + +KCP CEA G++++
Sbjct: 199 KRFLEAHRRRMDDPLLRPLLFKQIM----QECRKITKCPRCEARQGVIRR---------- 244
Query: 179 EKYRAKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIP 238
IVK V+ F + + K + ++++PL V LF I
Sbjct: 245 -----------IVKPVMDQFMKLRHVIKYKEGGKLHSIEEDLNPLVVKQLFESIDPTHAK 293
Query: 239 LLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARH 298
+L + PE L++ L VPP CIRPSV + + GT EDDLT S+I+ +N+
Sbjct: 294 ILNV----VSPEKLLINNLAVPPSCIRPSVTIEGQ-GTTEDDLTCIFSDIVELNNGWKNQ 348
Query: 299 LASAGKCELIQEDWDYLQLHAALYINSE---MSGIPLAMQPKKPGRGLVQRLKGKQGRFR 355
+ + + W LQL IN+E +S + ++ KPGRG+ QRLKGK+GRFR
Sbjct: 349 IRNGSQISQFILSWQCLQLQCTRLINAEAPAVSQLLVSRNISKPGRGVCQRLKGKEGRFR 408
Query: 356 GNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPD 415
GNLSGKRVDFS+RTVISPDPN+ + EV VP +A LT+PE V +N+ +++ V NG
Sbjct: 409 GNLSGKRVDFSARTVISPDPNVGVDEVVVPEWIAMKLTFPEEVTDSNISIMKKAVLNGVS 468
Query: 416 VHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSI 475
+ PGA YV+++ K L+Y N + ++ L GDVV RHL +GDVVLFNRQPSLH++SI
Sbjct: 469 IWPGATYVKKQN-GGKCSLQYANPKYMSDNLTVGDVVLRHLWNGDVVLFNRQPSLHRMSI 527
Query: 476 MCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVI 535
M HR +V P TFRFNECVC PYNADFDGDEMN+HLPQT EA+AEAL LM +V+
Sbjct: 528 MAHRVRVMPGSTFRFNECVCQPYNADFDGDEMNLHLPQTYEAKAEALHLM-------SVL 580
Query: 536 IRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDA 595
NL TPRNGE LIAA QDF+ YL+T +D F T++E Q A C DA
Sbjct: 581 ---------HNLTTPRNGEPLIAAVQDFLCASYLLTSKDRFLTRAEFCQ-ACCHFT--DA 628
Query: 596 TMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTG-----NKDLCV 650
++D+PPPAII P LWTGKQ+F+ ++RPNRRC+V N E K + + N +C
Sbjct: 629 ASQVDLPPPAIIYPVMLWTGKQVFNALLRPNRRCKVVVNFECKEREFQDPPVGKNACMCP 688
Query: 651 QDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMN 710
+D YVI NSELV G++ K LG+ +K +FY LL A M R++++ S ++
Sbjct: 689 KDGYVIFHNSELVSGALGKKALGA-SKDGLFYQLLTRNNRYIAAECMLRVSKLTSRWLAG 747
Query: 711 RGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVML 770
G + G+ DV PG +L+ K +LL GY+K I + TLQ PGCT EETLE +
Sbjct: 748 FGMTIGLDDVRPGPELLHHKQELLNEGYAKVTAAINNFD--TLQALPGCTREETLELQVK 805
Query: 771 SELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGF 830
L +R A KAC L N PLIM SG+KG+ INI+QM+A VGQQ ++G+R+ NGF
Sbjct: 806 RVLDELRNEAGKACNSNLRADNKPLIMFNSGAKGALINIAQMVALVGQQNVSGQRIENGF 865
Query: 831 EDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQR 890
R+LPHF+ +RGFV NSF++GL P EFFFHTM GREGL+DTAVKT+ETGY+QR
Sbjct: 866 IGRTLPHFDIGCMDAKSRGFVANSFFSGLGPEEFFFHTMSGREGLIDTAVKTSETGYMQR 925
Query: 891 RLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGL 924
RL+K+LE L + YD TVR G VVQF YG DGL
Sbjct: 926 RLMKALEVLAVCYDHTVRTTDGHVVQFLYGDDGL 959
Score = 134 bits (325), Expect = 1e-29
Identities = 65/101 (64%), Positives = 75/101 (74%)
Query: 1016 RLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNIT 1075
RL++ Q+ F+R C YQR + PG A+GAL AQSIGEPGTQMTLKTFHFAGVASMN+T
Sbjct: 1173 RLSVRQIFEFVRCCWKDYQRAICVPGEAIGALGAQSIGEPGTQMTLKTFHFAGVASMNVT 1232
Query: 1076 QGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
GVPR+KEIINAS I TPII L+ D E+A VK RI
Sbjct: 1233 LGVPRIKEIINASSTIQTPIIEVPLINNKDFEYALMVKARI 1273
>UniRef50_Q3SE62 Cluster: DNA-directed RNA polymerase; n=3; Paramecium
tetraurelia|Rep: DNA-directed RNA polymerase - Paramecium
tetraurelia
Length = 1368
Score = 753 bits (1862), Expect = 0.0
Identities = 454/1118 (40%), Positives = 642/1118 (57%), Gaps = 92/1118 (8%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVIT-KNLFLQDGQRVPAPHGVLDRRMGTNQKDANC 69
+ RKI + +++ SP A +++ KN G+ + HG LD RMG + +D C
Sbjct: 8 IKRKIGGLQYSILSPQDAINLAEVKIFRDKNYDKMTGKNIE--HGPLDLRMGQSLRDTQC 65
Query: 70 ETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKF 129
+C L L EC GHFGYI L LP++H+G+F ++ L+ +C +C +V L
Sbjct: 66 SSCTL-LNECPGHFGYIPLQLPIYHLGFFTHVVKCLKCLCYKCGQVRLTPD--------- 115
Query: 130 INPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDP 189
E++ L +K +VH C + N +K + K V +K R+ K
Sbjct: 116 ---EINQLTQK----MVH--------CIQTRSYNAQLK-----VFKKVLKKCRSNKQCPH 155
Query: 190 IVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRP 249
+ + EAK+ K A I + +++ L N F IP + L +N L+
Sbjct: 156 CYCEQI---GEAKKLAKGDAGKIILDTM-DINALYAWNQFSNIPKQHQFLFCINPFLNDL 211
Query: 250 EDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQ 309
DL+ + +P PP IRPS + +EDDLTMK IL ND++ + + I
Sbjct: 212 SDLLTSIIPAPPNNIRPSKMLSNTTKADEDDLTMKLKTILYHNDLLQKQIKEGKDGMSIL 271
Query: 310 EDWDYLQLHAALYINSEMSGIPL--AMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSS 367
+ Q H Y NSE +P + K RG+ QRLKGK+GR RGNLSGKR +F++
Sbjct: 272 KTQFLTQAHYFHYFNSETPRLPQFSSKDGKVDIRGIYQRLKGKRGRLRGNLSGKRAEFTA 331
Query: 368 RTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRG 427
R+VISPDPNL I +V +P H+A ILT PE V N++ +R V NGP ++PGA +V+ G
Sbjct: 332 RSVISPDPNLAIDQVTIPQHIACILTVPETVTALNIKKMRDYVQNGPSIYPGAKFVKLGG 391
Query: 428 LKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRT 487
+ L++ R +A +LK GDVV+RHL+ D+V+FNRQPSLH++S+M RA+V T
Sbjct: 392 VNYN--LQFARRAHLAYKLKIGDVVDRHLLSEDIVIFNRQPSLHRISMMAFRARVDKWHT 449
Query: 488 FRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNL 547
RFNECVCTP+NADFDGDEMN+HLPQT EAR+EALILM K NL
Sbjct: 450 LRFNECVCTPFNADFDGDEMNIHLPQTYEARSEALILMDV----------------KKNL 493
Query: 548 VTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAII 607
T ++GE L+ QDF+T +LIT +D F+++ + Q A A D+ +ID+P P I+
Sbjct: 494 KTIKSGESLVCLLQDFLTTAWLITNKDVFYSREQFMQFCA---AFSDSNEQIDLPAPTIL 550
Query: 608 KPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKN-YTGNKDLCVQD---SYVIIRNSELV 663
KP++LWTGKQ+ + ++ PNR+ + NLE K N + G D D YV+ ELV
Sbjct: 551 KPKQLWTGKQVINALLVPNRKTRLVLNLEAKESNAFKGKLDYLWMDPGDGYVVFDKCELV 610
Query: 664 CGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPG 723
CG++ K LG+ +K +FY L+RD + A M R A+++S ++ + G + GI DV
Sbjct: 611 CGNIGKKVLGA-SKLGLFYALIRDNSTQIAASVMQRFAKLSSRWISHYGMTIGIGDVMAP 669
Query: 724 KKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKA 783
K LIE ++ E Y +C Y ++ + PG T+E+TLEA + LS +RE
Sbjct: 670 KSLIEQIHQSTEQSYLQCKHY----QRSLIDADPGLTVEQTLEAKVNKTLSDVREQVGSK 725
Query: 784 CFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHF----E 839
C +L N LIM G+KGSN+N++QMI CVGQQ ++GKRVP GF R+LPHF +
Sbjct: 726 CQEQLKSDNKVLIMYLCGAKGSNVNVAQMIGCVGQQVISGKRVPEGFTGRTLPHFKDCGD 785
Query: 840 RHSKI----PAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKS 895
R+ + P A+GFV+NSFYTG+ EF+FH M GREGL DTAVKTA TGY+QRRLVK
Sbjct: 786 RYPNLDILHPKAKGFVKNSFYTGMDAIEFYFHNMAGREGLTDTAVKTATTGYMQRRLVKM 845
Query: 896 LEDLVLQYDMTVRNA-TGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNA 954
LEDL + YD+TVR+ T E+VQFRYG DGLDP +E + + L +L + +
Sbjct: 846 LEDLHIAYDLTVRSCDTKEIVQFRYGEDGLDPLAVEDANEVIKLQNLLTN--------SF 897
Query: 955 EPLDGDGIVLAAEETL-ALDDFKTSTDEFKNELLSFLKATAGRVRALRARYAGCGRAALQ 1013
L + I+L E L LD+ +E + L +AT + + R ++ Q
Sbjct: 898 TVLRKNQILLNKEHMLIKLDELFMIIEERHKKFLENYEATYEKE---KKRVQALFKSTNQ 954
Query: 1014 LERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMN 1073
+++ QL F+R ++ V+ PGT+VG + +QSIGEP TQMTLKTFH AGVA M+
Sbjct: 955 --QVSEKQLQWFIRSWMERFLTMVMAPGTSVGPITSQSIGEPATQMTLKTFHSAGVAGMS 1012
Query: 1074 ITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARR 1111
ITQGVPR+ EIINAS+ I TP I +L+ + A++
Sbjct: 1013 ITQGVPRLNEIINASKEIKTPQINVKLINRQVMDHAKQ 1050
>UniRef50_Q4U940 Cluster: DNA-directed RNA polymerase III largest
subunit (RPC homologue), putative; n=2; Theileria|Rep:
DNA-directed RNA polymerase III largest subunit (RPC
homologue), putative - Theileria annulata
Length = 1648
Score = 670 bits (1656), Expect = 0.0
Identities = 403/953 (42%), Positives = 572/953 (60%), Gaps = 87/953 (9%)
Query: 15 ISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGT--------NQKD 66
I + F+V + S I +++ IE+ K L+L + ++ P +G LD R+G N KD
Sbjct: 87 IDSLQFDVMASSDISRASEIEIEHKQLYLINSRK-PCLYGPLDSRLGCFLMVITGCNNKD 145
Query: 67 ANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPE-SLKKSY 125
A CETCG G ECVGH+G+I+L LPVFH+G+F+ I IL ICK+C+ ++L E S+KK Y
Sbjct: 146 AICETCGKGYNECVGHWGHIKLALPVFHIGFFKYTIQILYCICKKCSSLLLSEESIKKFY 205
Query: 126 ---RRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYR 182
++ +P + L+ KN+ + K SKCP C++ G++KK I+K + +++
Sbjct: 206 ELHKKAQDDPVLKPLIFKNIV----QDCKKISKCPRCQSPQGVIKK----IVKPIIDQFM 257
Query: 183 AKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGM 242
K IVK KES K + +E++PL V +LF I P+
Sbjct: 258 KLKH---IVKY--------KESGKMKT------VEEELNPLVVKHLFENID----PVHSK 296
Query: 243 NVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASA 302
+ + PE LI++ LP PP CIRPSV S + GT EDDLT S+I+ N+ + ++ +
Sbjct: 297 VLNIVHPEKLIISNLPAPPNCIRPSV-SVGEEGTTEDDLTCIFSDIVESNNQLKSYIKNG 355
Query: 303 GKCELIQEDWDYLQLHAALYINSE---MSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLS 359
+ W +Q +INS+ ++ + L+ + KPGRG+ QRLKGK+GRFRGNLS
Sbjct: 356 AQTNSFIVHWQIIQYQCTRFINSDSPALAQLLLSRRVSKPGRGIFQRLKGKEGRFRGNLS 415
Query: 360 GKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG 419
GKRVDFS+RTVISPDPN+ I EV VP +A+ LT+PERV N+ L++ + NG V PG
Sbjct: 416 GKRVDFSARTVISPDPNVGIDEVVVPEWIARRLTFPERVTKYNIHVLKKAILNGVSVWPG 475
Query: 420 ANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHR 479
A+YV + +K L++ N + +++ L+ GD+VERHL +GD+V+FNRQPSLH+LSIMCHR
Sbjct: 476 ASYVNKLD-GSKCSLRFANPKHMSENLQVGDIVERHLWNGDIVIFNRQPSLHRLSIMCHR 534
Query: 480 AKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVS 539
A+V TFRFNECVC PYNADFDGDEMN+HLPQT EARAEAL L+ +V+ ++
Sbjct: 535 ARVMSGSTFRFNECVCLPYNADFDGDEMNLHLPQTYEARAEALHLL-------SVLKNLT 587
Query: 540 LEQNKSNLVTPRNGELL---IAATQDFITGGYLITQRDTFFTKSEAQ-QLAACLLAGPDA 595
+N L+ P L + ++D +Q ++FT Q L + P
Sbjct: 588 TPRNGEPLIAPVQDFLCASYLLTSKDMFLNRSEFSQVISYFTDGTIQVDLPPPSIIHPVT 647
Query: 596 TMRIDMPPPAIIKPRKLWTGKQIFSLIMR------PNRRCEV--KANLE----TKGKNYT 643
+IKP K + ++ +R PN+ + K NLE K+ T
Sbjct: 648 LWTGKQVFSVLIKPNN--KSKVMVNIRVREREYTDPNQYYKNLNKDNLEGGKVENTKSQT 705
Query: 644 GNKD------------LCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEE 691
+ D +C D YV+I SEL+CGS+ +LG+ +K +FY L+ +
Sbjct: 706 SSNDVKPVSFMKLDDCMCPSDGYVVIYKSELMCGSLGVRSLGA-SKGGLFYELMLKNSPK 764
Query: 692 YAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKG 751
+ M R+++++S ++ G + G+ DVTP K+LI+ K +LL GYS+ D I +
Sbjct: 765 ISSECMLRVSKLSSRWLSEFGMTIGLDDVTPSKELIDKKKQLLLDGYSRVDEAISNFQ-- 822
Query: 752 TLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQ 811
LQ PGCT E+TLE + S L +R + K C L+P N PLIM SG+KG+ INI+Q
Sbjct: 823 FLQPYPGCTREQTLELQVKSILDELRNESGKICTSLLNPDNKPLIMFNSGAKGALINIAQ 882
Query: 812 MIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGG 871
M+ACVGQQ ++G+R+ NGF R+LPHF K +RGFV NSF+TGL P EFFFHTM G
Sbjct: 883 MVACVGQQNVSGQRIQNGFIGRTLPHFTMGCKDAKSRGFVANSFFTGLEPEEFFFHTMSG 942
Query: 872 REGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGL 924
REGL+DTAVKT+ETGY+QRRL+K +EDL + YD +VR + G++VQF YG DGL
Sbjct: 943 REGLIDTAVKTSETGYMQRRLMKVMEDLSVCYDYSVRTSDGQIVQFLYGDDGL 995
Score = 124 bits (299), Expect = 1e-26
Identities = 59/103 (57%), Positives = 75/103 (72%)
Query: 1014 LERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMN 1073
+ R++L Q+ F+R YQ+ + EPG A+GAL +QSIGEP TQMTLKTFHFAGVASMN
Sbjct: 1269 VNRISLEQMFEFIRYSWKDYQKSLCEPGEAIGALGSQSIGEPATQMTLKTFHFAGVASMN 1328
Query: 1074 ITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
+T GVPR++EIINA+ I+TPII L EFA +VK +I
Sbjct: 1329 VTLGVPRIQEIINATSLIATPIIEVPLEDKTSYEFALKVKSKI 1371
>UniRef50_P31813 Cluster: DNA-directed RNA polymerase subunit A';
n=5; Thermococcaceae|Rep: DNA-directed RNA polymerase
subunit A' - Thermococcus celer
Length = 905
Score = 663 bits (1637), Expect = 0.0
Identities = 384/961 (39%), Positives = 568/961 (59%), Gaps = 79/961 (8%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
+ + I + F + SP I++ + E+ + + +DG P G++D+R+G CE
Sbjct: 4 IKKVIGSIDFGILSPQEIRKMSAAEITVPDTYDEDGY--PIEGGLMDKRLGVIDPGLRCE 61
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFI 130
TCG EC GHFG+++L PV HVG+ + I +L++ C+EC ++ L + + Y KF
Sbjct: 62 TCGARAGECPGHFGHVELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYFHKFE 121
Query: 131 NPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPI 190
K L +HKKAK CP C + +K ++PT
Sbjct: 122 VTGNRKKAKDRLIKEIHKKAKERMVCPHCGSPQFPIK---------------FERPT--- 163
Query: 191 VKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPE 250
V + + +E N+ M+ P EV + +IPD D+PL+G++ + +RPE
Sbjct: 164 ---VYWELRKDEEGNEYKHRMM---------PSEVRDRLEKIPDRDLPLIGLDAEKARPE 211
Query: 251 DLILTRLPVPPLCIRPSVV--SDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELI 308
++LT LPVPP+ +RPS+ S I+A EDDLT K +I+ IN+ + ++ AG +LI
Sbjct: 212 WMVLTVLPVPPVTMRPSITLESGIRA---EDDLTHKLVDIIRINNRLKSNI-EAGAPQLI 267
Query: 309 QED-WDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
ED WD LQ H YIN+E SGIP A +P + L QRLKGK+GRFRGNLSGKRV+FS
Sbjct: 268 IEDLWDLLQYHVTTYINNETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFS 327
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV-QQ 425
+RTVISPDP + I EVGVP+ +A LT PE+V N + LR++V NGP+ +PGANYV
Sbjct: 328 ARTVISPDPMISINEVGVPMAIAMELTVPEKVTEFNFEKLRKMVLNGPEKYPGANYVIDP 387
Query: 426 RGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQ 485
G + + L N E +A++L G VERHL+DGDVVLFNRQPSLH++SIM HR +V P
Sbjct: 388 EGRRIR--LMENNLETVAEKLDIGWTVERHLLDGDVVLFNRQPSLHRMSIMAHRVRVMPY 445
Query: 486 RTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKS 545
RTFR N VC PYNADFDGDEMN+H+PQTEEA+AEA ILM N
Sbjct: 446 RTFRLNLSVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQN---------------- 489
Query: 546 NLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPA 605
++++PR G LIA QD I+GGYL+T+ +F ++E +Q+ + AG D R+ P
Sbjct: 490 HIISPRYGGPLIAGIQDHISGGYLLTREGAYFERTEVEQM--LMFAGVDVD-RLP-EPDK 545
Query: 606 IIKPRKLWTGKQIFSLIMRP-------NRRCEVKANLET-----KGKNYTGNKDL--CVQ 651
+ +LW+GK IFSL++ N+ C+ E + K +++
Sbjct: 546 VENGVELWSGKTIFSLLLPKDLTIWYRNKLCDEPGRCEALEKLIEEKLIPDEEEVRALAY 605
Query: 652 DSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNR 711
D + I N +L+ G++DK+ G + I++R++G E A + + ++ ++A + + ++
Sbjct: 606 DGFTYILNGKLLSGAIDKTAYGR-EDGKLLDIIVREYGVERARQFLDQVTKLAIWVITHK 664
Query: 712 GFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLS 771
GF+ I D + ++ +++ + + I G L+ PG T+EETLE+ +++
Sbjct: 665 GFTTAIDDEDLPTEALDRIREIIREAEERVNRLIEAYRNGELEPIPGKTLEETLESKIMA 724
Query: 772 ELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFE 831
L+ R+ A K R L +N +IMA++G++G +NI+QM A +GQQ++ GKR+ G+
Sbjct: 725 ALAEARDNAGKVAERYLGMSNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYR 784
Query: 832 DRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRR 891
+R L HF+ ARGFV NS+ +GLTP E+FFH MGGREGLVDTAV+TA++GY+QRR
Sbjct: 785 ERVLTHFKPGDLGARARGFVINSYKSGLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRR 844
Query: 892 LVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQD 951
L+ +L+DL ++YD TVR+ TG +VQFRYG DG+DP K + +D+ RV+ K +
Sbjct: 845 LINALQDLKVEYDGTVRDPTGIIVQFRYGEDGIDP-MRSWKGKTIDVNRVVLRTLLKLRG 903
Query: 952 K 952
K
Sbjct: 904 K 904
>UniRef50_Q22M85 Cluster: DNA-directed RNA polymerase; n=1;
Tetrahymena thermophila SB210|Rep: DNA-directed RNA
polymerase - Tetrahymena thermophila SB210
Length = 1418
Score = 648 bits (1601), Expect = 0.0
Identities = 396/952 (41%), Positives = 540/952 (56%), Gaps = 112/952 (11%)
Query: 42 FLQDGQRVPAPHGVLDRRMGTNQKDAN--CETCGLGLAECVGHFGYIQLTLPVFHVGYFR 99
F R P G LD RMG + ++ N C+TC +F
Sbjct: 11 FYNQTTRAPLNRGPLDLRMGPSMRENNLKCQTC------------------------FFG 46
Query: 100 AIITILQTICKECAKVMLPESLKKSYRRKFINP--EMSYLLKKNLKAVVHKKAKTFS--K 155
+I ILQ ICK C KV+L E KK+ ++ + +Y L+ +L + K+ K + K
Sbjct: 47 DVINILQCICKSCGKVLLDEDEKKNSMKRMQKAIDDKNYQLRADLYVKMRKECKKGANQK 106
Query: 156 CPSCEAINGMVKKS-------SIGILKIVHEKYRAKKPTDPIVKKVLMDFHEAKESNKEV 208
C SC NG +KK S + + +R + ++ I ++ L E+K KE+
Sbjct: 107 CRSCGYKNGPLKKMPKMPTTISFSDQTKLEQDFRDIRESEDIFQENLRKILESKNM-KEM 165
Query: 209 AAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSV 268
++N PLE +FR+I ++I L N++ + P DLILT + PP CIRP+V
Sbjct: 166 IEILN--------PLETYKIFRKITCDEILLF--NIQQNHPCDLILTHIIAPPACIRPTV 215
Query: 269 VSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMS 328
+ ++ DDLT+K + L N IA+ + I ++W LQ A Y+N+E
Sbjct: 216 -KEGESNVRHDDLTVKIRDFLDRNKRIAQMIEDGEDLIKINQEWFLLQCSHAHYLNAETP 274
Query: 329 GIPLAMQP---KKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVP 385
+P M KK R L QRLKGK+GRFRGNLSGKR +F+ RTVISPDPN+ I V VP
Sbjct: 275 NLPFKMDKDFGKKDIRALAQRLKGKKGRFRGNLSGKRSNFTGRTVISPDPNIPIDNVVVP 334
Query: 386 VHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQE 445
++AKILT+PE+V N++ L++LV NGP+ +PGA+Y+ + + K L NR K A E
Sbjct: 335 EYMAKILTFPEQVNAINIERLKKLVINGPEKYPGAHYIIAKDTEDKFNLSIDNRRKKADE 394
Query: 446 LKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGD 505
LK GD+VERH+ +G+++LFNRQPSLH++SIM +A +Q T RFNEC C P+NADFDGD
Sbjct: 395 LKIGDIVERHIQNGEILLFNRQPSLHRISIMAFKANIQKWNTIRFNECCCAPFNADFDGD 454
Query: 506 EMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFIT 565
EMN+H+PQT EARAEA L+ K NL++P+NGE DF+T
Sbjct: 455 EMNIHVPQTIEARAEAQYLL----------------DVKQNLISPKNGE-------DFLT 491
Query: 566 GGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKP---------------- 609
YLIT +D FF ++ Q C D RID+PPPAII P
Sbjct: 492 TAYLITHKDMFFDRAAFCQ---CCTYFSDGIERIDLPPPAIILPVGMKYYLLNIFQSQIY 548
Query: 610 --RKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKD---LCVQDSYVIIRNSELVC 664
+++WTGKQI +I+RPNR + NL K K Y +D +C D YV+ ++SEL+C
Sbjct: 549 QQKEMWTGKQIIDVILRPNRFSNIIVNLILKEKCYDTKQDRGVMCPTDGYVVFQSSELMC 608
Query: 665 GSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGK 724
G++ K+TLGSG K+ +FY L RD + A M R A++++ ++ N G + GI DVTP
Sbjct: 609 GNLGKTTLGSGNKNGLFYRLSRDNSQYMAASVMSRFAKLSARWITNYGMTIGISDVTPSP 668
Query: 725 KLIEAKNKLLESGYSKC--DGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAK 782
L + K + C I G L Q ++ +EA + L+ +RE
Sbjct: 669 SLNKINEKKKDEAIDSCKFQSLIFTNSIGKLDMQTVSDRKKLVEAEISKTLNQVREDIGS 728
Query: 783 ACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHS 842
C ++L PTN PLIMA GSKGS N+SQMI CVGQQ + G+RVPNGF R+LPHFE+
Sbjct: 729 NCNKQLPPTNGPLIMATCGSKGSATNLSQMIGCVGQQIIGGRRVPNGFTGRTLPHFEKDE 788
Query: 843 KI--PAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLV 900
P A GFV NSF+TGL+ EFFFHTM GRE LVDTAVKTA+TG RLVK LEDL
Sbjct: 789 IFPHPEAMGFVRNSFFTGLSAPEFFFHTMAGRESLVDTAVKTADTG----RLVKMLEDLS 844
Query: 901 LQYDMTVRNA-TGEVVQFRYGSDGLDPTYMEGK--DR--PVDLARVLADVRA 947
+ YD+T+R E+VQFRYG DG+ P E K D+ P+DL +L V++
Sbjct: 845 VNYDLTIRTCDKKELVQFRYGGDGICPWMSEEKVTDKSIPIDLETMLKYVKS 896
Score = 112 bits (269), Expect = 6e-23
Identities = 53/95 (55%), Positives = 70/95 (73%)
Query: 1017 LTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQ 1076
+T Q+ F + +Y + ++EPG AVGA+ A SI EP TQMTLK+FHFAGVASMNITQ
Sbjct: 1020 ITKRQINYFFKTLWERYPQMLVEPGEAVGAVGATSISEPATQMTLKSFHFAGVASMNITQ 1079
Query: 1077 GVPRVKEIINASRNISTPIITAELMQPYDQEFARR 1111
GVPR+KEII+A++ ISTPII +L+ + E + R
Sbjct: 1080 GVPRMKEIIDAAKKISTPIIDVKLLPQFQSEHSYR 1114
>UniRef50_P11512 Cluster: DNA-directed RNA polymerase subunit A';
n=13; Thermoprotei|Rep: DNA-directed RNA polymerase
subunit A' - Sulfolobus acidocaldarius
Length = 880
Score = 601 bits (1484), Expect = e-170
Identities = 331/738 (44%), Positives = 471/738 (63%), Gaps = 37/738 (5%)
Query: 214 SGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIK 273
+G + ++SP E+ + RIPD D+ LLG + K SRPE +ILT LPVPP+ IRPS+ I+
Sbjct: 169 NGSIVKLSPSEIRDRLERIPDSDVELLGYDPKSSRPEWMILTVLPVPPITIRPSIT--IE 226
Query: 274 AGTN-EDDLTMKQSEILLINDVIARHLASAGKCELIQED-WDYLQLHAALYINSEMSGIP 331
+G EDDLT K +I+ +N+ + + AG +LI ED WD LQ H A Y ++E+ G+P
Sbjct: 227 SGIRAEDDLTHKLVDIIRLNERLKESI-EAGAPQLIIEDLWDLLQYHVATYFDNEIPGLP 285
Query: 332 LAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAK 390
A +P R L QRLKGK+GRFRGNLSGKRVDFS+RTVISPDPNL I EVG+P +A+
Sbjct: 286 PAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNLSIDEVGIPYTIAR 345
Query: 391 ILTYPERVFPANLQWLRRLVCNGPDVHPGANYV-QQRGLKTK-KYLKYGNREKIAQELKC 448
+LT PERV N++ +R+ + NGPD PGANYV + G + +Y+K +R+++A +
Sbjct: 346 MLTVPERVTNINIERIRQYIINGPDKWPGANYVIKPDGRRIDLRYVK--DRKELASSITA 403
Query: 449 GDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMN 508
G VVERHLVDGDVVLFNRQPSLH++S+M H+ +V P RTFR N C PYNADFDGDEMN
Sbjct: 404 GYVVERHLVDGDVVLFNRQPSLHRISMMAHKVRVLPGRTFRLNLLDCPPYNADFDGDEMN 463
Query: 509 MHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGY 568
+H+PQ+EEA AEA LM H N++TPR G +I QD+I+G Y
Sbjct: 464 LHVPQSEEAIAEARELMLVH----------------KNIITPRYGGPIIGGGQDYISGAY 507
Query: 569 LITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRR 628
L++ + T T E A +L D ++ PAI+ P+ +TGKQ+ SL + +
Sbjct: 508 LLSVKTTLLTVEE----VATILGVTDFVG--ELGEPAILAPKPYYTGKQVISLFLPKDFN 561
Query: 629 CEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDW 688
AN+ +KG ++C DS+++I+N L+ G DK +G+ S+ + +R++
Sbjct: 562 FHGPANI-SKGPR-ACKDEICPHDSFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIREY 619
Query: 689 GEEYAVRGMWRLARMASYYMMNRGFSFGIIDVT-PGKKLIEAKNKLLESGYSKCDGYILE 747
G EY M + +M ++ RGF+ + D+T P + E K+ E GYS+ D YI +
Sbjct: 620 GTEYGKWLMDNVFKMFIRFLEMRGFTMTLEDITIPDEAQNEITTKIKE-GYSQVDEYIRK 678
Query: 748 MEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNI 807
+G L+ PG T+EE+LE+ +L L +R++A + + L P N IMA +G++GS +
Sbjct: 679 FNEGQLEPIPGRTIEESLESYILDTLDKLRKVAGEIATKYLDPFNNVYIMAITGARGSEL 738
Query: 808 NISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFH 867
NI+QM A +GQQ++ G+R+ G+ +R+L F+ P ARGFV+NSF GL+P E FFH
Sbjct: 739 NITQMTALLGQQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPYEMFFH 798
Query: 868 TMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPT 927
GGREGLVDTAVKT+++GY+QRRL+ +L DL ++YD TVR+ G++VQ YG D + P
Sbjct: 799 AAGGREGLVDTAVKTSQSGYMQRRLINALSDLRIEYDGTVRSLYGDIVQVVYGDDAVHPM 858
Query: 928 YMEGKDRPVDLARVLADV 945
Y + V++ RV+ V
Sbjct: 859 Y-SAHSKSVNVNRVIERV 875
Score = 87.0 bits (206), Expect = 3e-15
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Query: 15 ISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGL 74
I V F V SP+ I+Q + +IT ++ +DG P GV+D ++G + C CG
Sbjct: 6 IRGVKFGVLSPNEIRQMSVTAIITSEVYDEDG--TPIEGGVMDPKLGVIEPGQKCPVCGN 63
Query: 75 GLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEM 134
LA C GHFG+I+L PV H+GY + I L++ C C ++ + E + Y+R + ++
Sbjct: 64 TLAGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKIKEQDLERYKRIYNAIKL 123
Query: 135 SY-LLKKNLKAVVHKKAKTFSKCPSC 159
+ + L + K + +CP C
Sbjct: 124 RWPSAARRLVEYIKKISIKNLECPHC 149
>UniRef50_Q84KP6 Cluster: DNA-directed RNA polymerase; n=3;
Eukaryota|Rep: DNA-directed RNA polymerase -
Cyanidioschyzon merolae (Red alga)
Length = 1819
Score = 594 bits (1468), Expect = e-168
Identities = 361/927 (38%), Positives = 522/927 (56%), Gaps = 56/927 (6%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
+ + V F + SP +++ + + V ++ + G VP GVLD R+G ++ C TC
Sbjct: 14 KAVGAVQFGLLSPDELRRLSVVRV-EYDVAFERG--VPKAGGVLDPRLGAIDRNFPCATC 70
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
+C GHFG+I+L PVF+V ++ L+ +C C+++++ S + R I
Sbjct: 71 EGSSIDCPGHFGHIELVKPVFNVLMLSTVLKTLRCVCYYCSRLLVDGSDSRMLRAARIKD 130
Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGIL---KIVHEKYRAKKPTDP 189
+ K +AV F C G S ++ ++ + R KP +
Sbjct: 131 PV-----KRFQAV-------FQLCNGTRVCGGGADSSEEQLMLPAAVLEARERIGKPREG 178
Query: 190 IVKKVLMDFHEAKESNKEVAAMINSGLV-----KEMSPLEVLNLFRRIPDEDIPLLGMNV 244
+ H ++ + +A ++ +E++ V +FR I DED+ LLG +
Sbjct: 179 CGN---LQPHVTRDGLRILAEFPDAEAFAAERKQELAAERVQQIFRHIRDEDLELLGFHP 235
Query: 245 KLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGK 304
+ SRPE ++L+ LPVPP +RPS+ D EDDLT K +I+ N+ + R A
Sbjct: 236 RFSRPEWMVLSVLPVPPPHVRPSIQMDA-VSRGEDDLTFKLGDIIKANNALQRLEAEGAP 294
Query: 305 CELIQEDWDYLQLHAALYINSEMSGIPLA-MQPKKPGRGLVQRLKGKQGRFRGNLSGKRV 363
+I+E + LQ H A ++N+++ G+P A ++ +P + + QRLKGK+GR R NL GKRV
Sbjct: 295 AHVIREQYVLLQFHVATFMNNDLPGMPRATLRSGRPLKSIAQRLKGKEGRVRNNLMGKRV 354
Query: 364 DFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV 423
+FS+RTVI+ DP L + EVGVP VA LTYPE V P N+ L V NGP+ +PGA +V
Sbjct: 355 NFSARTVITADPQLALDEVGVPRSVAMTLTYPEVVTPYNIDRLWEAVRNGPNAYPGALFV 414
Query: 424 QQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQ 483
+ K + L++ R L+ G VVERHL++GD+VLFNRQPSLH++SIM HR ++
Sbjct: 415 IRNDGK-RIALQFVRRSADIV-LEPGCVVERHLLNGDLVLFNRQPSLHRMSIMGHRVRIL 472
Query: 484 PQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQN 543
P TFR N +PYNADFDGDEMN+H+PQ+EE RAE LM AV
Sbjct: 473 PYSTFRMNLSATSPYNADFDGDEMNLHVPQSEEVRAEIKELM-----AVP---------- 517
Query: 544 KSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPP 603
N+V+P+ ++ QD + G L T RDTF + L LL P RI P
Sbjct: 518 -KNIVSPQANRPVMGIVQDSLLGCMLFTLRDTFLEEDTVFNL---LLHLPHFDGRI--PA 571
Query: 604 PAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELV 663
PAI+KPR LWTGKQIFSL++ E +N G + D+ V+I+N EL+
Sbjct: 572 PAILKPRPLWTGKQIFSLLLPDGVNLERLSN----GHPDHERTIMTPSDTRVLIQNGELI 627
Query: 664 CGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPG 723
G +DK T+GS S+ ++ ++ G E + + + + +Y++M G S GI D
Sbjct: 628 TGIVDKRTVGSSA-GSLIHVTWKESGPERTSQLISDIQLLINYWLMQNGMSIGIGDCIAD 686
Query: 724 KKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKA 783
+ A N+ ++ + I ++G L+ QPG TM E+ EA + L+S R+ A
Sbjct: 687 AHTMAAINRTIQEAKDEVRQLIRLAQEGRLERQPGKTMLESFEACVNRVLNSARDKAGGF 746
Query: 784 CFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSK 843
L P+N M +GSKGS IN+SQ++ACVGQQ + GKR+P GF R+LPHF
Sbjct: 747 AQESLLPSNNIKRMVSAGSKGSFINVSQIVACVGQQNVEGKRIPYGFRRRTLPHFVVDDL 806
Query: 844 IPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQY 903
P ARGFVENS+ GLTP E FFH MGGREGL+DTAVKTAETGY+QRRL+K++ED+ ++Y
Sbjct: 807 SPEARGFVENSYLRGLTPEEVFFHAMGGREGLIDTAVKTAETGYIQRRLMKAMEDIRIEY 866
Query: 904 DMTVRNATGEVVQFRYGSDGLDPTYME 930
D TVRN+ G+V+QF YG D D +E
Sbjct: 867 DGTVRNSLGDVMQFLYGDDAADGAMLE 893
Score = 100 bits (240), Expect = 2e-19
Identities = 50/114 (43%), Positives = 68/114 (59%)
Query: 1009 RAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAG 1068
+ LQ+ RL L ++ R PG VGA+AAQS+GEP TQMTL TFHFAG
Sbjct: 1043 KRVLQIHRLNSKAFAWLLGEIETRFVRARATPGEMVGAVAAQSLGEPATQMTLNTFHFAG 1102
Query: 1069 VASMNITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRICTSKLK 1122
V++ N+T GVPR+KE+IN +R TP +T L D+E A V+ + +L+
Sbjct: 1103 VSAKNVTLGVPRLKELINVARQAKTPSVTVYLKSGKDKELANIVQSELEQCRLR 1156
>UniRef50_Q8MX30 Cluster: DNA-directed RNA polymerase; n=1;
Naegleria gruberi|Rep: DNA-directed RNA polymerase -
Naegleria gruberi
Length = 1590
Score = 593 bits (1465), Expect = e-168
Identities = 353/881 (40%), Positives = 517/881 (58%), Gaps = 48/881 (5%)
Query: 78 ECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPES-LKKSYRRKFINPEMSY 136
EC GHFG++++ PVF+V + ++ +LQ++C C K++ +S L+ KF+N
Sbjct: 1 ECPGHFGHVRIH-PVFNVLFINTVVKVLQSVCIHCGKLLADKSSLQFKKASKFVNR---- 55
Query: 137 LLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKKVLM 196
+K K ++ K KC I K++ + ++ + + K+
Sbjct: 56 --RKRFKEMIDLCRK--DKC----IIETGNKENEQNQEANIDPTFQPRNGCGGLQPKISR 107
Query: 197 DFHEA-KESNKEVAAMINSGLVK-EMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLIL 254
D + E K+ +A L K E++ L +F+RIP ED+ LLG + +RPE +IL
Sbjct: 108 DGLKIFAEYKKDTSAEAKQELTKQELTAERALQIFKRIPAEDLELLGFDKDNARPEWMIL 167
Query: 255 TRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDY 314
T LP+PP +RPSV A +EDDLT K ++I+ N I ++ S ++E
Sbjct: 168 TCLPIPPPQVRPSVHHG-SADRSEDDLTHKLADIIKANAAIQKNEKSGTPLHQMEEMVRM 226
Query: 315 LQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISP 373
LQ H A Y+N+E G+P A +P + + QRLKGK+GR RGNL GKRVDFS+RTVI+
Sbjct: 227 LQYHCATYVNNEYPGVPTATTKSGRPLKSIRQRLKGKEGRVRGNLMGKRVDFSARTVITA 286
Query: 374 DPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKY 433
DPN+ I +VGVP VA +T PE V P N + L LV NGP +PGA YV + T+
Sbjct: 287 DPNIDIDQVGVPRTVASNMTVPEIVTPFNFERLNELVTNGPLTYPGAKYVIRED-GTRID 345
Query: 434 LKYGNREKIAQ-ELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNE 492
L++ + + Q +L+ G VERHL DGDV+LFNRQPSLHK+S+M HR KV P TFR N
Sbjct: 346 LRFASGKANDQIQLEYGYKVERHLQDGDVILFNRQPSLHKMSMMGHRIKVMPYSTFRMNL 405
Query: 493 CVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRN 552
V TPYNADFDGDEMN+H+PQ+ + +AE L L T++ R N++TP++
Sbjct: 406 SVTTPYNADFDGDEMNLHVPQSLQTKAELLEL--------TMVPR--------NIITPQS 449
Query: 553 GELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKL 612
+IA QD + +T+RD F K + CL+ D ++ P PAI+KP+ L
Sbjct: 450 NRPVIALVQDTLLAASKLTRRDVFIAKD---LMMNCLMHLIDFDGKL--PVPAILKPKPL 504
Query: 613 WTGKQIFSLIM-RPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKST 671
WTGKQ+F+ ++ + N + + K + D+ D+ V+I ELV G +DK +
Sbjct: 505 WTGKQLFTFLLPKVNLENTSSTHEDLTDKKDHLDHDIPEFDTKVLIDRGELVSGVLDKKS 564
Query: 672 LGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKN 731
LGS + S+ +I++ + G + + + R+ +++++NRGFS GI D K +E
Sbjct: 565 LGS-SHGSLIHIIVNEKGVNEGKKFLGQCQRVINHWLINRGFSIGIGDTIADKATMEQIE 623
Query: 732 KLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPT 791
+ + + + ++G L+ + G T++++ E + L+ RE A + L
Sbjct: 624 ETIRKAEKDVKLIVKDAQEGKLRAEAGRTIQQSFENQVNKVLNKAREDAGNKAKKSLKDD 683
Query: 792 NAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFV 851
N M +GSKGS INISQ+IACVGQQ + GKR+P GF +R+LPHF + P +RGFV
Sbjct: 684 NNIKSMVTAGSKGSYINISQIIACVGQQNVEGKRIPYGFRNRTLPHFAQDDHGPESRGFV 743
Query: 852 ENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNAT 911
NS+ GLTP EFFFHTMGGREGL+DTAVKT+ETGY+QRRL+K++ED++++YD TVR+A
Sbjct: 744 ANSYLRGLTPQEFFFHTMGGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYDGTVRDAQ 803
Query: 912 GEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDK 952
G VVQF YG DG+D +E + +D+ L+D AK QDK
Sbjct: 804 GNVVQFLYGEDGMDAHKVESQS--IDIMN-LSD--AKFQDK 839
Score = 97.1 bits (231), Expect = 3e-18
Identities = 70/187 (37%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 935 PVDLARVLADVRAK--CQDKNAEPLDGDGIVLAAEETLALDDFKT--STDEFKNELLSFL 990
PV+L R++ + + + +P D + I + + DD TDE E +
Sbjct: 920 PVNLKRIIKNAQKEYGIHPSIGKPSDMNPIYVIEKIKKLCDDLVVIKGTDELSTEAQT-- 977
Query: 991 KATAGRVRALRARY--AGCGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALA 1048
AT LR+ + GC L + LT + L + H + +PG VG++A
Sbjct: 978 NATLLFSMFLRSTFFFKGCSLKNCVLLKKPLTFWLVKLELRFHNC---LAQPGEMVGSVA 1034
Query: 1049 AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIITAELMQPY--DQ 1106
AQSIGEP TQMTL TFHFAGV+S N+T GVPR+KE++N ++NI TP +T L Y D
Sbjct: 1035 AQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNVAKNIKTPGLTIYLNNEYIGDF 1094
Query: 1107 EFARRVK 1113
E A+ VK
Sbjct: 1095 EKAKMVK 1101
>UniRef50_Q4N0F9 Cluster: DNA-directed RNA polymerase II largest
subunit, putative; n=3; Apicomplexa|Rep: DNA-directed
RNA polymerase II largest subunit, putative - Theileria
parva
Length = 1681
Score = 592 bits (1462), Expect = e-167
Identities = 354/934 (37%), Positives = 527/934 (56%), Gaps = 54/934 (5%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
++I + F + P L+++ + E+ L+ ++G +P G+ D RMGT C TC
Sbjct: 17 KRIRAIEFGLLDPELVKRMSVCEITLTELY-REG--IPQTGGLNDLRMGTTDPRHICLTC 73
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
+ L C GHFG+I L P++H G+ ++ IL+ +C C+K++L ++ +P
Sbjct: 74 SMDLKYCPGHFGHIVLAKPMYHYGFMMTVLKILRCVCFNCSKLLLNKN----------DP 123
Query: 133 EMSYLLKKNLKAV-VHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIV 191
+ +LK + ++ ++ S +C I+ G Y + P
Sbjct: 124 RVQLILKSPSSSFRLNHLSELCSASRTCR-IDTQTNTKIEGC-GYPQPSYTKEGPN---- 177
Query: 192 KKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPED 251
+++ F + + E + + + + ++P E + R I ED+ LG + S+P
Sbjct: 178 --LMIQFSQKQREILEESDEQCNDIKRPLTPEEAFKVLRGITLEDMKCLGFVPERSQPCW 235
Query: 252 LILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQED 311
LIL LPVPP +RP V + +EDDLT+K ++L N++I RH A +IQE
Sbjct: 236 LILQVLPVPPPAVRPYV--QYGSDRSEDDLTLKLLDVLKTNNLIKRHDKRATAPHIIQEM 293
Query: 312 WDYLQLHAALYINSEMSGIPLAM-QPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTV 370
LQ H ++++ G+P+A + KKP + + RLKGK+GR RGNL GKRVDFS+RTV
Sbjct: 294 CQLLQFHITTLFDNDIPGMPIASTRSKKPIKSIRARLKGKEGRLRGNLMGKRVDFSARTV 353
Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKT 430
I+ DPN+ I +GVP +A LT+ E V N + LR+ V GP PGA Y+ R T
Sbjct: 354 ITGDPNIPIDTIGVPKSIAMTLTFCETVNSLNYESLRKKVETGPHDWPGAKYII-RDDGT 412
Query: 431 KKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRF 490
+ L++ + Q L+ G VERH+ DGD +LFNRQPSLHK+SIM HRAK+ P TFR
Sbjct: 413 RFDLRHVKKSSELQ-LEYGYKVERHMQDGDYILFNRQPSLHKMSIMGHRAKILPYSTFRL 471
Query: 491 NECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTP 550
N V TPYNADFDGDEMN+HL QT E RAE LM ++ +V+P
Sbjct: 472 NLSVTTPYNADFDGDEMNLHLVQTHETRAEVKHLM---------LV-------PKQIVSP 515
Query: 551 RNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPR 610
+ ++ QD + T+RDTF T+ E L L+ P ++ P PAI P+
Sbjct: 516 QGNRPVMGIVQDSLLAVSKFTKRDTFLTRDELMSL---LIWIPYWDGKL--PQPAIFFPK 570
Query: 611 KLWTGKQIFSLIMRPNRRCEV-KANLETKG--KNYTGNKDLCVQDSYVIIRNSELVCGSM 667
LWTGKQ+ S+++ N+ + NL G K N + + DS VIIR +E + G +
Sbjct: 571 NLWTGKQVISVLLTFNQSQGITNINLIRDGTIKLDKDNLNCSINDSRVIIRKNEHISGII 630
Query: 668 DKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLI 727
K T+G + S+ +IL + G E + L ++ + + + GF+ D+ + +
Sbjct: 631 CKKTVGCSS-GSLIHILWHEAGPEKCRDFLTTLQKVVNNWFLQIGFTVSCSDICCSESTL 689
Query: 728 EAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRE 787
+++L+ + +L+ +KG L+CQPG ++ E+ EA + EL+ RE +
Sbjct: 690 NKVSRILDKSKKEVQKLVLQAQKGKLKCQPGKSLFESFEARVNKELNDAREQSGSIVASS 749
Query: 788 LHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAA 847
L+ +N L M SGSKGS INISQ+IACVGQQ + GKR+P GF DRSLPHF +H P +
Sbjct: 750 LNLSNNILSMVNSGSKGSTINISQIIACVGQQNVEGKRIPFGFRDRSLPHFIKHDYGPES 809
Query: 848 RGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTV 907
RGFV NS+ +GLTP E FFH MGGREG++DTA KT+ETGY+QRRL+K++ED+++QYD T
Sbjct: 810 RGFVSNSYLSGLTPQEMFFHAMGGREGIIDTACKTSETGYVQRRLIKAMEDVMVQYDRTA 869
Query: 908 RNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARV 941
RN GE++QF YG DG+ Y+E D+ +DL R+
Sbjct: 870 RNGNGEILQFLYGEDGMGAEYIE--DQFIDLMRL 901
Score = 91.5 bits (217), Expect = 1e-16
Identities = 44/81 (54%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
Query: 1035 RGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTP 1094
+ + PG VGA+AAQSIGEP TQMTL TFHFAGV+S N+T G+PR+KE+IN N+ TP
Sbjct: 1070 KAIANPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVTNVRTP 1129
Query: 1095 IITAELMQPY--DQEFARRVK 1113
+T L DQE A+ ++
Sbjct: 1130 SLTIYLDPSINKDQERAKEMQ 1150
>UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit
RPB1; n=473; cellular organisms|Rep: DNA-directed RNA
polymerase II subunit RPB1 - Homo sapiens (Human)
Length = 1970
Score = 588 bits (1453), Expect = e-166
Identities = 352/922 (38%), Positives = 518/922 (56%), Gaps = 51/922 (5%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
R I V F V SP +++ + E K +G R P G++D R G ++ C+TC
Sbjct: 16 RTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGR-PKLGGLMDPRQGVIERTGRCQTC 74
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
+ EC GHFG+I+L PVFHVG+ + +L+ +C C+K+++ + NP
Sbjct: 75 AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSN----------NP 124
Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCPS---CEAINGMVKKSSI----GILKIVHEK-YRAK 184
++ +L K+ + + C CE M K + G + EK +
Sbjct: 125 KIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGC 184
Query: 185 KPTDPIVKKVLMDFH-EAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMN 243
P +++ ++ + E K N++ ++ +SP V +F+RI DE+ +LGM
Sbjct: 185 GRYQPRIRRSGLELYAEWKHVNEDSQ---EKKIL--LSPERVHEIFKRISDEECFVLGME 239
Query: 244 VKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAG 303
+ +RPE +I+T LPVPPL +RP+VV A N+DDLT K ++I+ IN+ + R+ +
Sbjct: 240 PRYARPEWMIVTVLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGA 298
Query: 304 KCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKR 362
+I ED LQ H A +++E+ G+P AMQ +P + L QRLKGK+GR RGNL GKR
Sbjct: 299 AAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKR 358
Query: 363 VDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANY 422
VDFS+RTVI+PDPNL I +VGVP +A +T+ E V P N+ L+ LV G +PGA Y
Sbjct: 359 VDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKY 418
Query: 423 VQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV 482
+ R + L++ + L+ G VERH+ DGD+V+FNRQP+LHK+S+M HR ++
Sbjct: 419 II-RDNGDRIDLRFHPKPSDLH-LQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRI 476
Query: 483 QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQ 542
P TFR N V TPYNADFDGDEMN+HLPQ+ E RAE + ++ R+
Sbjct: 477 LPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEI--------QELAMVPRM---- 524
Query: 543 NKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMP 602
+VTP++ ++ QD +T T+RD F + E L L +T +P
Sbjct: 525 ----IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFL-----STWDGKVP 575
Query: 603 PPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSEL 662
PAI+KPR LWTGKQIFSLI+ + C + ++ K + D+ V++ N EL
Sbjct: 576 QPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGEL 635
Query: 663 VCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTP 722
+ G + K +LG+ + S+ +I + G + + + + +++ G + GI D
Sbjct: 636 IMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIA 694
Query: 723 GKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAK 782
K + ++ I + L+ PG T+ +T E + L+ R+
Sbjct: 695 DSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGS 754
Query: 783 ACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHS 842
+ + L N M SG+KGS INISQ+IA VGQQ + GKR+P GF+ R+LPHF +
Sbjct: 755 SAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDD 814
Query: 843 KIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
P +RGFVENS+ GLTPTEFFFH MGGREGL+DTAVKTAETGY+QRRL+KS+E ++++
Sbjct: 815 YGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVK 874
Query: 903 YDMTVRNATGEVVQFRYGSDGL 924
YD TVRN+ +VVQ RYG DGL
Sbjct: 875 YDATVRNSINQVVQLRYGEDGL 896
Score = 95.1 bits (226), Expect = 1e-17
Identities = 49/111 (44%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 1007 CGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHF 1066
C R + RL+ L K+ + + PG VGALAAQS+GEP TQMTL TFH+
Sbjct: 1050 CSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHY 1109
Query: 1067 AGVASMNITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRIC 1117
AGV++ N+T GVPR+KE+IN S+ TP +T L+ ++ A R K +C
Sbjct: 1110 AGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARD-AERAKDILC 1159
>UniRef50_P04050 Cluster: DNA-directed RNA polymerase II subunit
RPB1; n=225; Eukaryota|Rep: DNA-directed RNA polymerase
II subunit RPB1 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 1733
Score = 585 bits (1445), Expect = e-165
Identities = 360/936 (38%), Positives = 527/936 (56%), Gaps = 63/936 (6%)
Query: 1 MPKEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRM 60
M +QY + R + V F + SP ++ + + I + + Q G+ D R+
Sbjct: 1 MVGQQYSSAPL-RTVKEVQFGLFSPEEVR-AISVAKIRFPETMDETQTRAKIGGLNDPRL 58
Query: 61 GTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPES 120
G+ ++ C+TC G+ EC GHFG+I L PVFHVG+ I + + +C C K++L E
Sbjct: 59 GSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDE- 117
Query: 121 LKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKC----PSCEAINGMVKKSSIGILKI 176
+ + ++ K A + KT C PS + +V + G
Sbjct: 118 -----HNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCG---- 168
Query: 177 VHEKYRAKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDED 236
T P ++K + + + ++ L + +S E+LN+F+ I +D
Sbjct: 169 ---------NTQPTIRKDGLKLVGSWKKDRATGDADEPEL-RVLSTEEILNIFKHISVKD 218
Query: 237 IPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIA 296
LG N SRPE +ILT LPVPP +RPS+ S ++ EDDLT K ++IL N +
Sbjct: 219 FTSLGFNEVFSRPEWMILTCLPVPPPPVRPSI-SFNESQRGEDDLTFKLADILKANISLE 277
Query: 297 RHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFR 355
+ I+E LQ H A Y++++++G P A+Q +P + + RLKGK+GR R
Sbjct: 278 TLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIR 337
Query: 356 GNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPD 415
GNL GKRVDFS+RTVIS DPNL++ +VGVP +AK LTYPE V P N+ L +LV NGP+
Sbjct: 338 GNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPN 397
Query: 416 VHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSI 475
HPGA YV R + L+Y R Q L+ G VERH++D D VLFNRQPSLHK+S+
Sbjct: 398 EHPGAKYV-IRDSGDRIDLRYSKRAGDIQ-LQYGWKVERHIMDNDPVLFNRQPSLHKMSM 455
Query: 476 MCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVI 535
M HR KV P TFR N V +PYNADFDGDEMN+H+PQ+EE RAE ++ +
Sbjct: 456 MAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAE-----------LSQL 504
Query: 536 IRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDA 595
V L+ +V+P++ + + QD + G +T RDTF E Q+ L PD
Sbjct: 505 CAVPLQ-----IVSPQSNKPCMGIVQDTLCGIRKLTLRDTFI---ELDQVLNMLYWVPDW 556
Query: 596 TMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYV 655
I P PAIIKP+ LW+GKQI S+ + PN +L+ + G L +D+ +
Sbjct: 557 DGVI--PTPAIIKPKPLWSGKQILSVAI-PN-----GIHLQRFDE---GTTLLSPKDNGM 605
Query: 656 IIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSF 715
+I + +++ G ++K T+GS + + +++ R+ G + + + ++ ++++++ GFS
Sbjct: 606 LIIDGQIIFGVVEKKTVGS-SNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFST 664
Query: 716 GIID-VTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELS 774
GI D + G + E + E+ D E + L + G T+ E+ E ++ L+
Sbjct: 665 GIGDTIADGPTMREITETIAEAKKKVLD-VTKEAQANLLTAKHGMTLRESFEDNVVRFLN 723
Query: 775 SIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRS 834
R+ A + L N M +GSKGS INI+QM ACVGQQ++ GKR+ GF DR+
Sbjct: 724 EARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRT 783
Query: 835 LPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVK 894
LPHF + P ++GFVENS+ GLTP EFFFH MGGREGL+DTAVKTAETGY+QRRLVK
Sbjct: 784 LPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVK 843
Query: 895 SLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYME 930
+LED+++ YD T RN+ G V+QF YG DG+D ++E
Sbjct: 844 ALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIE 879
Score = 106 bits (255), Expect = 3e-21
Identities = 62/142 (43%), Positives = 81/142 (57%), Gaps = 2/142 (1%)
Query: 983 KNELLSFLKATAGRVRALRARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGT 1042
KNE++ + A + R R LQ RLT L ++ R V+ PG
Sbjct: 1003 KNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGE 1062
Query: 1043 AVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIITAELMQ 1102
VG LAAQSIGEP TQMTL TFHFAGVAS +T GVPR+KEI+N ++N+ TP +T L
Sbjct: 1063 MVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEP 1122
Query: 1103 PY--DQEFARRVKGRICTSKLK 1122
+ DQE A+ ++ I + LK
Sbjct: 1123 GHAADQEQAKLIRSAIEHTTLK 1144
>UniRef50_Q5CUJ2 Cluster: DNA-directed RNA polymerase; n=3;
Eukaryota|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum Iowa II
Length = 1902
Score = 581 bits (1434), Expect = e-164
Identities = 350/963 (36%), Positives = 546/963 (56%), Gaps = 89/963 (9%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
+++ + F V SP LI++ + +E+ +++ ++G+ P G+ D +GT CETC
Sbjct: 24 KRVFSIEFGVLSPELIRKYSVLEIKVSDIY-ENGR--PKSGGLNDPLLGTTDYHILCETC 80
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYR--RKFI 130
+ + C GHF +I+L P+FH+G+ ++ +L+ +C C+K+ + ++L ++ ++
Sbjct: 81 HMDIKTCPGHFAHIELGKPMFHIGFITTVLKLLRCVCYACSKLFV-DTLDPKFKQIKRIK 139
Query: 131 NPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEK--YRAKKPTD 188
NP + LK ++ ++ + S+C + +G S G ++ + K Y +
Sbjct: 140 NPRL------RLKKILEMRSSS-SRC--IISSDG----SGCGFVQPTYSKEGYNLYINQN 186
Query: 189 PIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSR 248
+++ D E+ +S + +AA EVL +F+RI +D+ +LG +
Sbjct: 187 QDENRIIDD--ESVDSKRLLAAE------------EVLTIFKRISHDDMKILGFDPVKCN 232
Query: 249 PEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELI 308
P I T +P+PP +RP V + +EDDLT+K +I+ +N+ + + + +I
Sbjct: 233 PSWFINTVIPIPPPAVRPYV--QFGSDRSEDDLTLKLQQIIKLNENLKKQIRIGSPEHII 290
Query: 309 QEDWDYLQLHAALYINSEMSGIPLAM-QPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSS 367
E LQ H IN+++ G+P + + +P + L RLKGK GR RGNL GKRVDFS+
Sbjct: 291 SEMSTVLQYHLITLINNDLPGLPQSRTRSNRPIKSLRARLKGKDGRIRGNLMGKRVDFSA 350
Query: 368 RTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGA-NYVQQR 426
RTVI+ DPNL + +VGVP +A LTYPE V P N++ L+ LV GP PGA + +Q+
Sbjct: 351 RTVITGDPNLAVDQVGVPYSIAMTLTYPEVVTPYNIEELKELVQRGPHEWPGATSIIQED 410
Query: 427 GLKTKKYLKYGNREKIAQE-LKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQ 485
G TK L++ N + L+ G VERH+ + D+VLFNRQPSLHK+SIM HR K+ P
Sbjct: 411 G--TKVDLRFSNTSNNSNNILQYGWKVERHMKNDDLVLFNRQPSLHKMSIMGHRVKILPY 468
Query: 486 RTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKS 545
TFR N V +PYNADFDGDEMN+HL Q+ E R+E LM ++ R
Sbjct: 469 STFRLNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKNLM--------MVPR-------- 512
Query: 546 NLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPA 605
+V+P+ + +I QD + G +L+T++ TF T+ + QL C+ ++PPPA
Sbjct: 513 QIVSPQGNKPVIGIVQDSLLGIFLLTRKSTFLTRDKFLQLLLCI-----PYWNGNIPPPA 567
Query: 606 IIKPRKLWTGKQIFSL---------------IMRPNRRCEVKANLETKGKNYTGNKDLCV 650
I++P+ LWTGKQI ++ +MR +K + + + +K+ V
Sbjct: 568 ILRPQPLWTGKQIITVLLAFTTDLGEPIELNLMRDGSIVSIKQSNNSSNTDKDDSKEAIV 627
Query: 651 Q-------DSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARM 703
D+ VII+ E +CG + K GS + S+ +IL + G E + +
Sbjct: 628 NNPWISELDNQVIIQKGEHICGVLTKKIAGS-SSGSLIHILWNEIGPEKTGLFLTYTQMV 686
Query: 704 ASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEE 763
+ +++ GF+ G D+ P +E LE + I +KG L CQPG ++ E
Sbjct: 687 VNTWLLEHGFTVGCQDIQPQNYTLEKIMNSLEGSKLQVQQIIRRAQKGKLDCQPGKSLIE 746
Query: 764 TLEAVMLSELSSIRELAAKACFRELHPT-NAPLIMAQSGSKGSNINISQMIACVGQQALN 822
+ EA + EL+S REL+ L + N + M Q GSKGS INISQ++ACVGQQ +
Sbjct: 747 SFEAQVNQELNSARELSGTIATENLDSSKNNIVAMVQCGSKGSTINISQIMACVGQQNVE 806
Query: 823 GKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKT 882
GKR+P GF DRSLPHF ++ P +RGFV NS+ +GLTP E FFH MGGREG++DTA KT
Sbjct: 807 GKRIPFGFRDRSLPHFLKYDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKT 866
Query: 883 AETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVL 942
+ETGY+QRRL+K++ED ++QYD TVRN+ G+++QF YG DG+ ++E D+ ++L ++
Sbjct: 867 SETGYIQRRLIKAMEDCMVQYDRTVRNSNGDIIQFLYGEDGMAGEFIE--DQVIELLQME 924
Query: 943 ADV 945
A V
Sbjct: 925 AAV 927
Score = 100 bits (240), Expect = 2e-19
Identities = 52/131 (39%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 984 NELLSFLKATAGRVRALRARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTA 1043
+ +++ ++ A + + R + + L+++RL T L H++ R + G
Sbjct: 1059 DSIIAEVQKNATTLLGIHIRSSLASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHSGEM 1118
Query: 1044 VGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIITAELMQ- 1102
VG +AAQSIGEP TQMTL TFHFAGV S N+T GVPR++E+IN ++N+ TP +T L
Sbjct: 1119 VGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTVYLESG 1178
Query: 1103 -PYDQEFARRV 1112
DQE A+ V
Sbjct: 1179 IANDQEQAKDV 1189
>UniRef50_Q71ET7 Cluster: DNA-directed RNA polymerase; n=689;
Eukaryota|Rep: DNA-directed RNA polymerase - Zea mays
(Maize)
Length = 1009
Score = 565 bits (1395), Expect = e-159
Identities = 340/860 (39%), Positives = 495/860 (57%), Gaps = 55/860 (6%)
Query: 85 YIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRR-KFINPEMSYLLKKNLK 143
+++L P+FH+G+ + +++I++ +C C+K++ E K + K NP K LK
Sbjct: 1 HLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETKFKQALKIRNP------KNRLK 54
Query: 144 AVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIV-KKVLMDFHEAK 202
+ + K+ C + ++ + + I K A++P + K++ +F K
Sbjct: 55 RI-YDACKSKKVCAGGDDLDVQEQDTDEPIKK--RGGCGAQQPNITVDGMKMVAEFKAPK 111
Query: 203 ESNKEVAAMINSGLVKEMSPLE-VLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPP 261
+ + + K++ E VLN+ +RI DED LLG+N K +RP+ +IL LPVPP
Sbjct: 112 KKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPVPP 171
Query: 262 LCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAAL 321
+RPSV+ D + +EDDLT + + I+ N+ + R + +I E LQ H A
Sbjct: 172 PPVRPSVMMDTSS-RSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIAT 230
Query: 322 YINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQ 380
Y ++++ G P A Q +P + + RLK K+GR RGNL GKRVDFS+RTVI+PDPN+ I
Sbjct: 231 YFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINID 290
Query: 381 EVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG---ANYV-QQRGLKTKKYLKY 436
E+GVP +A LTYPE V P N++ L+ LV GP PG A Y+ ++ G + L+Y
Sbjct: 291 ELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLD--LRY 348
Query: 437 GNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCT 496
+ Q L+ G VERHL DGD VLFNRQPSLHK+SIM HR K+ P TFR N V +
Sbjct: 349 VKKSS-DQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 407
Query: 497 PYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELL 556
PYNADFDGDEMNMH+PQ+ E RAE L LM +V+P++ +
Sbjct: 408 PYNADFDGDEMNMHVPQSFETRAEVLELM----------------MVPKCIVSPQSNRPV 451
Query: 557 IAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGK 616
+ QD + G IT+RDT K + L+ D +I P P I+KPR +WTGK
Sbjct: 452 MGIVQDTLLGCRKITKRDTLIEKDVFMNI---LMWWQDFDGKI--PAPTILKPRPIWTGK 506
Query: 617 QIFSLIMRPNR----RCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTL 672
Q+F+LI+ P + R + E KG G D+ V I EL+ G++ K +L
Sbjct: 507 QVFNLII-PKQINLIRFSAWHSEEEKGFITPG-------DTMVRIEKGELLSGTLCKKSL 558
Query: 673 GSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNK 732
G+G+ S+ +++ + G + A + + + +Y+++ GFS GI D +E N
Sbjct: 559 GTGS-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMETIND 617
Query: 733 LLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTN 792
+ + I + + L+ +PG TM E+ E + L+ R+ A + L +N
Sbjct: 618 TISKAKNAVKELIKKAHEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQNSLSESN 677
Query: 793 APLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVE 852
M +GSKGS INISQM ACVGQQ + GKR+P GF DR+LPHF + P +RGFVE
Sbjct: 678 NLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVE 737
Query: 853 NSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATG 912
NS+ GLTP EFFFH MGGREGL+DTAVKT+ETGY+QRRLVK++ED++++YD TVRN+ G
Sbjct: 738 NSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLG 797
Query: 913 EVVQFRYGSDGLDPTYMEGK 932
+V+QF YG DG+D ++E +
Sbjct: 798 DVIQFLYGEDGMDAVWIESQ 817
>UniRef50_Q27095 Cluster: DNA-directed RNA polymerase; n=2;
Trichomonas vaginalis|Rep: DNA-directed RNA polymerase -
Trichomonas vaginalis
Length = 1661
Score = 565 bits (1395), Expect = e-159
Identities = 337/928 (36%), Positives = 507/928 (54%), Gaps = 56/928 (6%)
Query: 15 ISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGL 74
+ + F + P I+ E IT+N + G+ V G+ D RMGT ++ C+TCG
Sbjct: 14 VGSIDFGLFDPEKIEMFGACE-ITENQMMDKGEYVKG--GLSDLRMGTQTRERLCDTCGR 70
Query: 75 GLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEM 134
+C GHFGYI+L P FHVG+ +LQ +C +C +V+ S +PE+
Sbjct: 71 NQEDCPGHFGYIRLAEPFFHVGFLPHCYKLLQMVCHKCGRVLCSYS----------DPEI 120
Query: 135 SYLL-----KKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDP 189
Y++ K + K A KC + + + + + E ++
Sbjct: 121 QYIVTHYKGKNRFLKLFEKIASKSGKCQHSPDLKNP-NEPDVCLDERFWELVNGDSHSEH 179
Query: 190 I-VKKVLMDFHEAKESNKEVAAMINSGLVKE---MSPLEVLNLFRRIPDEDIPLLGMNVK 245
+ VKK A E K+ + E +S VL +F I D+D+ LLG N K
Sbjct: 180 VRVKKPCNAAVPAIEQGKDFLIKLKDVSKTEEDYLSAEVVLRIFENISDQDVRLLGFNPK 239
Query: 246 LSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKC 305
S P+ +IL LPVPPL +RP VVS ++ ++DD+T K S+I++ N + + +
Sbjct: 240 RSHPKWMILKILPVPPLAVRPQVVSPGQSAPSQDDITHKLSDIIICNKRLRAQRSESSTD 299
Query: 306 ELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVD 364
++E LQ H Y+ ++ I A+ +P + + QRLKGK+G RG+LSGKR D
Sbjct: 300 TAMKETRTLLQYHITTYMINDKPSIERAVTKSGRPLKVISQRLKGKEGHLRGHLSGKRDD 359
Query: 365 FSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV- 423
+S+R+VISPD ++ I +VGVP +AKILT+PE V P N +WL +V G D GAN+V
Sbjct: 360 YSARSVISPDTSISIDQVGVPEQLAKILTFPEVVTPTNQKWLESIVMKGHDDLGGANFVI 419
Query: 424 QQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQ 483
G +T + L G +VERHL D D+V+FNRQPSLHK+S+M HRA +
Sbjct: 420 NDHGTRTDLSCC---TDLSTITLSPGYIVERHLRDDDIVIFNRQPSLHKMSMMGHRALIM 476
Query: 484 PQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQN 543
RTFR N C TPYNADFDGDEMN+H+PQ++ AR E H AV
Sbjct: 477 SGRTFRLNPCDTTPYNADFDGDEMNLHVPQSQTARTEV-----RHIMAVP---------- 521
Query: 544 KSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPP 603
+++P+ + +I QD + G L+++RDTF T+++ L L D + PP
Sbjct: 522 -KQIISPQANKPVIGLVQDALLGCRLLSKRDTFLTRNQVMNLMMWLPTTKDTIL----PP 576
Query: 604 PAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELV 663
P I+KP +LW+GKQ+FSL + ++ N ++ N + + D +VIIR+ L+
Sbjct: 577 PCILKPVQLWSGKQVFSLFLP-----KISHNSYSQDANKMDQNSIPLADRHVIIRDGNLL 631
Query: 664 CGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIID-VTP 722
G + K T+ ++ S+ ++++ + A + + + + ++ +RGFS G+ID V P
Sbjct: 632 AGILGKKTVAR-SEGSLIHVVINSYNTNIAKDFLNQTQLIVNNWLEHRGFSIGLIDCVVP 690
Query: 723 GKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAK 782
L E K+++ + SK I++ + G L+ PG + ++ E + + + I K
Sbjct: 691 DFVLQEVKHEI-DDVESKVQATIIKAQDGQLERMPGMSYMQSFETEVNNLTNEILSKTYK 749
Query: 783 ACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHS 842
++ N+ M +GSKG++ N+SQ+I VGQQ + GKRV GF R+LPHF++H
Sbjct: 750 VINAKIRGDNSLSEMLSAGSKGADTNMSQIIGVVGQQNMEGKRVKFGFNGRTLPHFQKHE 809
Query: 843 KIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
RGF +NS+ GLTP EF FH MGGR G++DTA KT++TGY+QRRLVKS+E +
Sbjct: 810 YGLVERGFCKNSYIAGLTPPEFLFHAMGGRTGIIDTACKTSDTGYIQRRLVKSMESHHVA 869
Query: 903 YDMTVRNATGEVVQFRYGSDGLDPTYME 930
YD TVRN+ E+VQF YG DGLD T +E
Sbjct: 870 YDGTVRNSQNEIVQFIYGGDGLDATGLE 897
Score = 92.3 bits (219), Expect = 7e-17
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNI 1091
++ R ++ PG VG +A QSIGEP TQMTL TFHFAG+++ ++T GVPR+ E++N +++I
Sbjct: 1072 RFYRSIVAPGEMVGTIAGQSIGEPSTQMTLNTFHFAGISAHDVTLGVPRLNELMNLAKHI 1131
Query: 1092 STPIITAELMQPY--DQEFARRVKGRICTSKLK 1122
TP +T E + D+E + V+ +I ++ K
Sbjct: 1132 RTPSVTVEFERDVAKDEEIVKAVRAQIESASFK 1164
>UniRef50_Q8PUR1 Cluster: DNA-directed RNA polymerase subunit A';
n=5; Archaea|Rep: DNA-directed RNA polymerase subunit A'
- Methanosarcina mazei (Methanosarcina frisia)
Length = 880
Score = 564 bits (1393), Expect = e-159
Identities = 314/730 (43%), Positives = 447/730 (61%), Gaps = 30/730 (4%)
Query: 218 KEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTN 277
++++P E+ + F IPDEDI ++GM+ K +RPE +ILT LPVPP+ +RPS+ + +
Sbjct: 173 EKLTPTEIRDRFENIPDEDIRVVGMDPKNARPEWMILTVLPVPPVTVRPSITLE-SGQRS 231
Query: 278 EDDLTMKQSEILLINDVIARHLASAGKCELIQED-WDYLQLHAALYINSEMSGIPLAMQP 336
EDDLT K +I+ IN + AG +LI ED W+ LQ H + ++ +SGIP A
Sbjct: 232 EDDLTHKLVDIIRINQRFQEN-REAGAPQLIIEDLWELLQYHVTTFFDNSVSGIPPARHR 290
Query: 337 K-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYP 395
+P + L QRLKGK+GRFRG+LSGKRV+FS+RTVISPDPNL I EVGVP+ +AKILT P
Sbjct: 291 SGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEVGVPMPIAKILTMP 350
Query: 396 ERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERH 455
V P N++ L+ V NG D+HPGANYV + + K N+E +A++L+ G VER
Sbjct: 351 AVVTPRNIEQLKVYVRNGEDIHPGANYVFRSDGRRIKVTNM-NKEDLAEKLEFGWTVERQ 409
Query: 456 LVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTE 515
L DGD VLFNRQPSLHK+SIM H KV P +TFR N VC PYNADFDGDEMNMH QTE
Sbjct: 410 LKDGDTVLFNRQPSLHKMSIMAHSVKVLPNKTFRLNPAVCPPYNADFDGDEMNMHALQTE 469
Query: 516 EARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDT 575
E+RAEA ILM Q + N+++PR G +I D I+G +L+T+ +
Sbjct: 470 ESRAEAKILM----------------QVQENILSPRFGGPIIGGIHDHISGLFLLTRFEN 513
Query: 576 FFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANL 635
+ +A L + + P + WTGKQIFS I+ E A +
Sbjct: 514 RISSFDAYDLLR-----KSSARSLPEPAGHDEYGKPYWTGKQIFSQILPEGLNAEFSAQV 568
Query: 636 ETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVR 695
+ T K+ C D+YV+IR+ +L+ G++D++ +G+ K I ++++ G E R
Sbjct: 569 CSHCD--TCKKEECPNDAYVVIRDGKLITGTVDEAAIGA-FKGKIQDRIIKEIGPEAGAR 625
Query: 696 GMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQC 755
+ + ++A +M G SFGI D K+ N++L I L
Sbjct: 626 FVDDMTKLAIRAIMRTGLSFGIADEDIPKEARIQINEVLTEAEDAVQNLIKSYINKELDP 685
Query: 756 QPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIAC 815
PG T++ET+E ++ +L R+ + N+ +IMA+SG++GS +N++QM AC
Sbjct: 686 LPGRTLDETIEMSIMQKLGKARDKTGNIADSHMGLENSAVIMARSGARGSILNLTQMAAC 745
Query: 816 VGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGL 875
VGQQA+ G+R+ G+ R+LPHF A GFV+ S+ +GL PTE+FFH +GGREGL
Sbjct: 746 VGQQAVRGERIRRGYAGRTLPHFLEGDLGSDAHGFVKASYKSGLNPTEYFFHAIGGREGL 805
Query: 876 VDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRP 935
VDTAV+T+++GYLQRRLV +L+DL +QYD+TVR+ G +VQF+YG DG++PT + +P
Sbjct: 806 VDTAVRTSQSGYLQRRLVNALQDLEVQYDLTVRDTRGVLVQFKYGEDGINPTKSD-FSKP 864
Query: 936 VDLARVLADV 945
+ R++ V
Sbjct: 865 DTIHRIVRSV 874
Score = 93.9 bits (223), Expect = 2e-17
Identities = 45/149 (30%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
+ ++IS + F + SP I++ + +IT + + DG P G++D ++G C+
Sbjct: 7 IPKRISSIKFGLMSPKEIRKMSATPIITADTYDDDG--FPIDMGLMDTKLGVIDPGLRCK 64
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFI 130
TC EC GHFG+I+L PV HVG+ + I +L+ C++C+K++L + K+ + +
Sbjct: 65 TCSGRAGECPGHFGHIELVAPVVHVGFNKVIRKLLRATCRKCSKILLEPAQKQQFLDQLT 124
Query: 131 NPEMSYLLKKNLKAVVHKKAKTFSKCPSC 159
E + +L V+K+A CP C
Sbjct: 125 AVEEIGHMPDDLINEVYKEASKVKNCPYC 153
>UniRef50_Q98RN1 Cluster: DNA-directed RNA polymerase; n=1;
Guillardia theta|Rep: DNA-directed RNA polymerase -
Guillardia theta (Cryptomonas phi)
Length = 1289
Score = 558 bits (1378), Expect = e-157
Identities = 333/929 (35%), Positives = 520/929 (55%), Gaps = 81/929 (8%)
Query: 15 ISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGL 74
I + F + S I + I++ N+FL+D + +LD ++G N ++ C C
Sbjct: 6 IHEIEFKIFSREEISGYSTIQLTNSNIFLKD-KNTSQEGSLLDEKLG-NIRNQICSFCKD 63
Query: 75 GLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEM 134
C GH+G+++L++PV ++G+ + I ILQ +CK C+ ++L S +K + +
Sbjct: 64 KFKFCQGHYGHLRLSMPVLNLGFIKTIQCILQMVCKRCSSLLLRSSKEKIHFSFLLGKNS 123
Query: 135 SYLL-KKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKK 193
+ + KK + + +K K+ KCP+CE NG ++K I L +H
Sbjct: 124 NNKVEKKKIYFNILEKCKSHRKCPNCEFSNGKIRK--ISNLAFLH--------------- 166
Query: 194 VLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLI 253
D +K E+ + PL++ +F +I ED+ L+G+N R E+LI
Sbjct: 167 ---DIDNSKNEINEI-----------LGPLKIFQIFSKINAEDLELIGVNDYGFRIENLI 212
Query: 254 LTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWD 313
+P+PP IRPS+ D TNEDDLT+K + I N + L I+E W
Sbjct: 213 FFFIPIPPSIIRPSIRIDTYT-TNEDDLTIKLASIQNTNKKLKYELEQNMNYNRIKELWT 271
Query: 314 YLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISP 373
+LQ+ Y +S+ ++ +G+ QRLKGK GRFRG L GKRVDFS+RTVISP
Sbjct: 272 FLQIECYQYFDSDFFQKKFNLK----FQGVFQRLKGKNGRFRGTLIGKRVDFSARTVISP 327
Query: 374 DPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKY 433
DPNL + ++G+P+ + K L++PE++ N + L+R + G D +PG V R K K +
Sbjct: 328 DPNLFLSQIGIPIIICKNLSFPEKLNFYNYERLKRCILRGNDRYPGVVSVITRDNK-KIF 386
Query: 434 LKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNEC 493
L N++ + K G+ ++RHLV D++LFNRQPSLH+LSIM HR ++ ++TFR N C
Sbjct: 387 LNKSNKKNMMFFSKIGNSIQRHLVKNDIILFNRQPSLHRLSIMAHRIRIFKEKTFRLNHC 446
Query: 494 VCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNG 553
VC PYNADFDGDEMN+H+PQ+E +R EA+ L+ S+N N TPRNG
Sbjct: 447 VCKPYNADFDGDEMNLHVPQSETSRTEAITLLNSYN----------------NFYTPRNG 490
Query: 554 ELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLW 613
E+LIA +QDF++ +++T R+ FF K E L++G + + + PAI+KP+ LW
Sbjct: 491 EILIACSQDFLSYSFILTSRNIFFNKEE----VTGLISG-EVSDLFNNILPAILKPKILW 545
Query: 614 TGKQIFS-------------LIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNS 660
TGKQIFS LI + +++ ++ N T + +C + + II+N+
Sbjct: 546 TGKQIFSEILFFDKNYYHLNLIKKQKTNYQIREKFTSRQFN-TCSPFVCPIEGWTIIKNN 604
Query: 661 ELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDV 720
++ G + K++LG+G K S+F + + + +++ + + N GFSF I +V
Sbjct: 605 LILSGRLGKTSLGTGNKMSLFSFSRNNNSASEILNSILKISILNQNWFSNYGFSFSINNV 664
Query: 721 TPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELA 780
P K + + K +++ +K L +K + + + +T E + L+S++
Sbjct: 665 KPSKVICKKKEQIISK--AKNVHQSLNYKK-KITNKNSLMVLDTFEEKLNIILNSVKGDL 721
Query: 781 AKACFRELH-PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLP--H 837
+ C + N+ IM SGSKGS +N+ QM+ +GQQ ++ KR+ NGF R LP
Sbjct: 722 GRICVTTKNIDNNSASIMVASGSKGSQLNLVQMMLTLGQQMISAKRILNGFSYRILPSQS 781
Query: 838 FERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLE 897
F++ + + +G +ENSFY+GL EFFFH+M GREGL+DTAVKTAE GYLQRRLVKSLE
Sbjct: 782 FKKENMLFNEKGLIENSFYSGLDSKEFFFHSMAGREGLIDTAVKTAEIGYLQRRLVKSLE 841
Query: 898 DLVLQYDMTVRNATGEVVQFRYGSDGLDP 926
D+ + D TVR++ G + QF +G D ++P
Sbjct: 842 DISIMNDSTVRDSFGRIYQFTFGGDNVNP 870
Score = 88.2 bits (209), Expect = 1e-15
Identities = 36/64 (56%), Positives = 51/64 (79%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPII 1096
+I+PGT VG ++AQS+GEPGTQMTL+TFH AG S NIT G+PR+ EI++ S+N P+I
Sbjct: 952 IIDPGTGVGCISAQSLGEPGTQMTLQTFHSAGTGSQNITSGIPRINEILSNSKNTKFPLI 1011
Query: 1097 TAEL 1100
+ ++
Sbjct: 1012 SYDI 1015
>UniRef50_A7AWJ0 Cluster: DNA-directed RNA polymerase II largest
subunit, putative; n=2; Eukaryota|Rep: DNA-directed RNA
polymerase II largest subunit, putative - Babesia bovis
Length = 1746
Score = 557 bits (1376), Expect = e-157
Identities = 344/934 (36%), Positives = 517/934 (55%), Gaps = 54/934 (5%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
+K+ + F + P +I++ + EV L+ ++G VP G+ D RMGT NC TC
Sbjct: 17 KKVRGIEFGMFDPEMIKRLSVCEVTQTELY-REG--VPHTGGLNDLRMGTTDARHNCLTC 73
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
+ + C GHFG+I L ++H +++ +L+ +C C+ ++ + +P
Sbjct: 74 FMDVKYCTGHFGHITLAKEMYHCCLLTSVLKVLRCVCFNCSSLLCDKE----------DP 123
Query: 133 EMSYLLK-KNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIV 191
+ L+K ++ + K A+ + P C+ V S + KY K+ T ++
Sbjct: 124 RVKNLMKLRSTGTRLLKMAEICTSSPRCQQAE--VSGSKMKGCGYPQPKY-TKEGTSLMI 180
Query: 192 KKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPED 251
+ D H ++ +EV + + + E + + I +D+ LG N + S+P
Sbjct: 181 Q--FSDKH--RQMLEEVDEDCEE-IKRSFTAEEAYKVLKNISHDDMRYLGFNPERSQPAW 235
Query: 252 LILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQED 311
+IL LPVPP +RP V + +EDDLT+K +I+ N+++ +H A + +E
Sbjct: 236 MILKVLPVPPPAVRPYVAYG--SDRSEDDLTLKLLDIVKANNMLRKHEERATAPHIAEEI 293
Query: 312 WDYLQLHAALYINSEMSGIPLAM-QPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTV 370
LQ H ++E+ G+P+A + KKP + L RLKGK GR RGNL GKRVDF +RTV
Sbjct: 294 SQLLQYHLTTLFDNELPGMPVASTRSKKPIKSLRARLKGKGGRLRGNLMGKRVDFCARTV 353
Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKT 430
I+ DPNL + +GVP +A LT+ E V P NL+ LR+ V GP PGA Y+ R +
Sbjct: 354 ITGDPNLPVDVIGVPKSIAMTLTFSETVTPLNLENLRKKVEMGPHEWPGAKYIV-RADGS 412
Query: 431 KKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRF 490
+ L++ R Q L+ G VERHL DGD +LFNRQPSLHK+SIM HR KV P TFR
Sbjct: 413 RFDLRHVKRASDLQ-LEYGYRVERHLQDGDYILFNRQPSLHKMSIMGHRCKVLPYSTFRL 471
Query: 491 NECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTP 550
N V +PYNADFDGDEMN+HL QT E RAE LM ++ +V+P
Sbjct: 472 NLSVTSPYNADFDGDEMNLHLAQTHETRAEVKHLM---------LV-------PKQIVSP 515
Query: 551 RNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPR 610
+ ++ QD + G T+RD F TK L L+ P ++ P P I P
Sbjct: 516 QGNRPVMGIVQDSLLGISKFTRRDCFLTKDMLMNL---LMWIPYWDGKL--PQPCIFHPV 570
Query: 611 KLWTGKQIFSLIMRPNRRCEVKA-NLETKGKNYTGNKD-LC-VQDSYVIIRNSELVCGSM 667
LWTGKQ+ S+++ ++ + NL N + C DS VII +E + G +
Sbjct: 571 PLWTGKQVVSIMLTFDQMNSLTCINLMRNSAVALENDNPYCSANDSKVIISKNEHLSGII 630
Query: 668 DKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLI 727
K T+G+ + S+ ++L + G + + L ++ + +++ GF+ D+ + +
Sbjct: 631 CKKTVGTSS-GSLIHVLWHEAGPDRCKDFLTTLQKVVNNWLVYNGFTVSCSDIMASESTL 689
Query: 728 EAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRE 787
++LE + + ++G L+CQPG ++ E+ EA + EL+ RE + +
Sbjct: 690 TQVAEILERSKKEVQRLVGLAQRGKLKCQPGKSLFESFEARVNKELNEAREQSGTIAAKS 749
Query: 788 LHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAA 847
L N L M SGSKGS INISQ+IACVGQQ + GKRVP GF DRSLPHF +H P +
Sbjct: 750 LDERNNILAMVNSGSKGSTINISQIIACVGQQNVEGKRVPFGFRDRSLPHFIKHDYGPES 809
Query: 848 RGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTV 907
RGFV NS+ +GLTP E FFH MGGREG++DTA KT+ETGY+QRRL+K++ED+++ YD TV
Sbjct: 810 RGFVSNSYLSGLTPQEMFFHAMGGREGVIDTACKTSETGYVQRRLMKAMEDIMVHYDKTV 869
Query: 908 RNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARV 941
R+ G+++QF YG DG+ Y+E D+ +DL ++
Sbjct: 870 RSGGGDILQFLYGEDGMGAEYVE--DQTLDLMKL 901
Score = 99.1 bits (236), Expect = 6e-19
Identities = 46/86 (53%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 1033 YQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNIS 1092
+ + + PG VGA+AAQSIGEP TQMTL TFHFAGV+S N+T G+PR+KE+IN RN+
Sbjct: 1071 FYKSICHPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVRNVK 1130
Query: 1093 TPIITAELMQ--PYDQEFARRVKGRI 1116
TP +T L + +DQE A+ ++ R+
Sbjct: 1131 TPSLTIHLDRGVAHDQERAKDMQTRL 1156
>UniRef50_Q9AXN0 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase -
Glaucosphaera vacuolata
Length = 1746
Score = 555 bits (1371), Expect = e-156
Identities = 309/715 (43%), Positives = 435/715 (60%), Gaps = 33/715 (4%)
Query: 220 MSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNED 279
+S +VL++F+ I D+DI ++G++ + SRPE ILT PVPP IRPSV+ D ED
Sbjct: 188 VSAEKVLSIFKHISDDDIEIMGLSPQHSRPEWFILTLFPVPPPHIRPSVMMDASM-RGED 246
Query: 280 DLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-K 338
DLT K +I+ N+ + + + E LQ H +N+++ G+P A Q +
Sbjct: 247 DLTYKLGDIVRNNNALREMERTGAPAHRLNEQIHVLQAHIITIMNNDLPGMPRAHQKSGR 306
Query: 339 PGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERV 398
P + + QRLKGK+GR RGNL GKRVDFS RTVISPDPNL++ +VGVP +A LTYPE V
Sbjct: 307 PIKSISQRLKGKEGRVRGNLMGKRVDFSGRTVISPDPNLRLDQVGVPQTIAMNLTYPEVV 366
Query: 399 FPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVD 458
P N++ +RRLV NGP+ +PGA Y+++ NR I L G+ V RHL+D
Sbjct: 367 TPFNVEKMRRLVMNGPNEYPGAKYIERLDGSKVNLAFVKNRSDI--HLNNGEKVIRHLLD 424
Query: 459 GDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEAR 518
GD V+FNRQPSLHK+SIM HR KV +FR N +PYNADFDGDEMN+H+PQ+ +AR
Sbjct: 425 GDYVIFNRQPSLHKMSIMGHRVKVMRYSSFRLNLSCTSPYNADFDGDEMNLHVPQSPQAR 484
Query: 519 AEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFT 578
AE + LM ++ R +V+P+ + ++ QD + G L TQRDTF
Sbjct: 485 AEVMQLM--------MVPRC--------IVSPQGNKPVMGIVQDTLVGTMLFTQRDTFME 528
Query: 579 KSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETK 638
K L G D +PPPAI+KPR+LWTGKQ+FS+I+ P+ NL
Sbjct: 529 KDLVMNL-LLHFRGWDGV----IPPPAILKPRQLWTGKQLFSMIL-PD------VNLVRF 576
Query: 639 GKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMW 698
+ + D+ V+I EL+ G++DK T+GS +S+ ++ ++ G E A +
Sbjct: 577 SNTHDDDDIENAGDTKVLISRGELLSGTVDKRTVGSAA-NSLVHVTWKEHGPEGACDLIS 635
Query: 699 RLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPG 758
+ + +++++ RGFS GI D ++ +++ + + + ++G LQ PG
Sbjct: 636 NIQTLVNHWLLQRGFSIGIGDTIADEQTRFNVIEIINKAKEEVKRLVRKAQEGELQLLPG 695
Query: 759 CTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQ 818
TM E+ E + L+ R+ + + L TN M +GSKGS INISQ+ ACVGQ
Sbjct: 696 KTMMESFETGVNKVLNGARDKSGSDAQKSLLKTNNIKRMVNAGSKGSFINISQICACVGQ 755
Query: 819 QALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDT 878
Q + GKR+ GF R+LPHF P +RGFVENS+ GLT TEFFFH MGGREGL+DT
Sbjct: 756 QNVEGKRISYGFRRRTLPHFVLDDLGPESRGFVENSYLRGLTATEFFFHAMGGREGLIDT 815
Query: 879 AVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKD 933
AVKT+ETGY+QRRL+K+LED++++YD TVRN+TG +VQF YG DG+D +E ++
Sbjct: 816 AVKTSETGYIQRRLIKALEDVMVKYDGTVRNSTGLIVQFLYGEDGMDGAMVEDQN 870
Score = 90.2 bits (214), Expect = 3e-16
Identities = 50/143 (34%), Positives = 77/143 (53%), Gaps = 2/143 (1%)
Query: 976 KTSTDEFKNELLSFLKATAGRVRALRARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQR 1035
+ T+ +L + A + ++ R + L+ RL + L +++
Sbjct: 1014 EVDTNSVSRQLAVEAQENATLLWSIHIRAFLASKVILKEYRLDKKAFMHLLGEIENRFLH 1073
Query: 1036 GVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPI 1095
PG +GA+A QSIGEP TQMTL TFHFAGV++ N+T GVPR+KEIIN +++ TP
Sbjct: 1074 AKCPPGEMIGAVAPQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKHCKTPS 1133
Query: 1096 ITAELM--QPYDQEFARRVKGRI 1116
+T L D E A++V+ +
Sbjct: 1134 LTVYLRGEAARDAERAKQVQAEL 1156
Score = 73.7 bits (173), Expect = 3e-11
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
+K+ V F V SP I++ + E+ + F + G+ P G++D R+G +D C+TC
Sbjct: 15 KKVKAVQFGVLSPDEIRRMSVCEIKFETAF-EMGK--PKTEGLMDPRLGAIGRDLPCKTC 71
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVML-PESLKKSYRRK 128
C GHFG+I+L P+F++G+F + +L+ +C C+K+++ P K + K
Sbjct: 72 HCDEKNCPGHFGHIELVKPMFNIGFFGMTLRVLRCVCFFCSKLLIDPRDPKADFEVK 128
>UniRef50_P41556 Cluster: DNA-directed RNA polymerase subunit A';
n=18; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit A' - Methanococcus vannielii
Length = 889
Score = 545 bits (1345), Expect = e-153
Identities = 311/743 (41%), Positives = 448/743 (60%), Gaps = 38/743 (5%)
Query: 218 KEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTN 277
K+++ EV + +IP+ED LLG+N +++RPE ++LT LPVPP+ +RPS+ + +
Sbjct: 176 KQLTSSEVREILEKIPNEDCKLLGINSRVARPEYMVLTVLPVPPVTVRPSITLE-SGERS 234
Query: 278 EDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK 337
EDDLT K +I+ IN + ++ +I++ WD LQ H Y ++E GIP A
Sbjct: 235 EDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRS 294
Query: 338 -KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPE 396
+P R L QRLKGK+GRFR NL+GKRV+FS+RTVISPDP L I EVG+P +AK LT PE
Sbjct: 295 GRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGIPELIAKELTVPE 354
Query: 397 RVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTK--KYLKYG------NREKIAQELKC 448
+V P N++ +R+L+ NG D HPG NYV ++ +KTK K +Y N++ + +
Sbjct: 355 KVTPYNIERIRKLIENGSDKHPGVNYVIKK-VKTKDGKEEEYKIKITDTNKKMWVENIVD 413
Query: 449 GDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMN 508
G VVERHL DGDVVL+NRQPSLH++SIM H+ KV P RTFR N CVC PYNADFDGDEMN
Sbjct: 414 GMVVERHLGDGDVVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNADFDGDEMN 473
Query: 509 MHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGY 568
+H+PQ+EEARAEA LM ++ + ++++PR G +I A DF++G Y
Sbjct: 474 VHVPQSEEARAEAETLM---------LV-------EKHIISPRYGGPIIGAIHDFVSGAY 517
Query: 569 LITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRR 628
++T + F K EA L G + P + + ++GK +FS +
Sbjct: 518 VLTSSN--FIKDEALTLLKSSGFGSELG-----EPDFVENGIEYYSGKSLFSKTLPKGLN 570
Query: 629 CEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDW 688
+ KA + K ++ C D++VIIRN LV G +DK+ G+ T + +++D+
Sbjct: 571 LQYKAKVCKKCVQC--KREECENDAFVIIRNGRLVQGVIDKNGFGAET-GVVLNTIVKDF 627
Query: 689 GEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEM 748
G E A + +M+ MM RGF+ GI D + I+ LL+ S +
Sbjct: 628 GSEDARTFLDSATKMSVKSMMLRGFTTGIDDEDIPSEAIQEIQDLLDKAESDVQEIVERY 687
Query: 749 EKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNIN 808
E GTL PG +EE+ EA ++ L R+ K + L N +MA++G++GS +N
Sbjct: 688 EGGTLDPLPGRGIEESREAYIMQILGKARDDTGKVAEKYLSKENHAALMARTGARGSLLN 747
Query: 809 ISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHT 868
I+ M A VGQQ++ G RV G+ R+LPHF S + GFV + + GL PTE+FFH
Sbjct: 748 ITMMAASVGQQSVRGGRVFRGYRGRTLPHFGEGSLDAKSHGFVRSCYKKGLAPTEYFFHA 807
Query: 869 MGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTY 928
MGGREGLVD AV+TA++GY+QRRLV +L+D+ +YD TVR++ G +VQF YG D +DP+
Sbjct: 808 MGGREGLVDQAVRTAQSGYMQRRLVNALQDIKAEYDGTVRDSRGIIVQFNYGEDLVDPSK 867
Query: 929 MEGKDRPVDLARVLADVRAKCQD 951
+ + VDL +V V +K ++
Sbjct: 868 AD-HGKGVDLDKVFTKVISKYEN 889
Score = 87.8 bits (208), Expect = 2e-15
Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 2/157 (1%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
V ++I +TF + SP I+ + +++T + + DG P G++D R+G C+
Sbjct: 6 VPKEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY--PIDGGLMDTRLGVIDPGLVCK 63
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFI 130
+C + C GHFG+I+L+ V H+G+ + I +L+ +C C KV + E + Y K +
Sbjct: 64 SCSGRVGTCPGHFGHIELSKSVIHIGFAKDIYKLLKAVCPHCGKVTVTEIKRDEYLEKML 123
Query: 131 NPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVK 167
E L + K+A S CPSC + +K
Sbjct: 124 KLEEDGGDPWTLSDDLLKEAAKSSVCPSCGEVKYDIK 160
>UniRef50_Q74M69 Cluster: DNA-directed RNA polymerase; n=1;
Nanoarchaeum equitans|Rep: DNA-directed RNA polymerase -
Nanoarchaeum equitans
Length = 870
Score = 544 bits (1342), Expect = e-153
Identities = 329/925 (35%), Positives = 507/925 (54%), Gaps = 76/925 (8%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
+K+ + P +I++ + +EV + +DG +P +G +D RMG C+TC
Sbjct: 4 KKLGLIDLRPLDPEVIRKLSVVEVKIPEPYDRDG--LPIENGPMDPRMGVIDPGLRCKTC 61
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRK---F 129
G EC+GHFG I+L PV+HV + I +LQ C +C + ++P+ LK+ + +K +
Sbjct: 62 GGKYGECLGHFGRIELARPVYHVKFLNEIKRLLQYTCPKCGRAIIPQKLKEQFLKKINEY 121
Query: 130 INPEMSYLLKKNLKAVVHKKAKTF-SKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTD 188
IN L +++ V K + K C N +K+ + +KP
Sbjct: 122 INEGKYDELSNFIQSTVIPKINEYRKKHKKCPYCNAELKE------------IKFEKPWY 169
Query: 189 PIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSR 248
+K+ + D E VK ++PL+V +IPDED L G + R
Sbjct: 170 FYIKEKIGDKEE---------------WVK-LTPLDVRQWLEKIPDEDAKLFG--IINGR 211
Query: 249 PEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELI 308
PE L+LT + VPP+ RPS++ + +EDDLT K ++I+ IN+ I L+ ++
Sbjct: 212 PEWLVLTVILVPPVTARPSIILET-GERSEDDLTHKIADIVRINNRIEELLSYGAPEPIL 270
Query: 309 QEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSS 367
+E+W+ LQ H A Y ++E+ +P A +P +GL+QR+KGK+GR R NL+GKRV+FS+
Sbjct: 271 EENWEMLQYHVATYFDNELPNVPKARHRSGRPLKGLLQRIKGKEGRLRRNLAGKRVNFSA 330
Query: 368 RTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRG 427
R VIS DP + I EVGVP VAK LT+PE V NL WL++ V NGP+ GANYV
Sbjct: 331 RGVISVDPRIDIDEVGVPEQVAKELTFPEIVTEWNLDWLKQKVLNGPESLDGANYVIDPN 390
Query: 428 LKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRT 487
+ K ++ N+E++A+ L+ G VVERH+++GD LFNRQPSLHK+S+M HR+ + P +T
Sbjct: 391 GRRFKIMEE-NKEELAERLEPGWVVERHIINGDYALFNRQPSLHKMSMMGHRSVILPGKT 449
Query: 488 FRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNL 547
FR N TPYNADFDGDEMN HL Q E + E L + ++
Sbjct: 450 FRLNPATTTPYNADFDGDEMNYHLVQNYEGKTEIEFLANV----------------REHI 493
Query: 548 VTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLA-ACLLAGPDATMRIDMPPPAI 606
VTPR G +I AT+D ITG YL++ +D K Q + C G D ++ + A
Sbjct: 494 VTPRYGLAIIGATEDIITGLYLLSLKDKIPFKDAIQLIEYNCKYFGKDKILK--LVEKAK 551
Query: 607 IKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGS 666
+ R TGK++FS ++ + E+K TK + +I+N L+ G
Sbjct: 552 KEGRDYLTGKEVFSALLPDDLDFEIK----TKNGEF-------------VIKNGILLKGV 594
Query: 667 MDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKL 726
+DK +G K + L +G E+ + + + R++ Y+ + D+ K++
Sbjct: 595 IDKEIVGV-EKGKLIRELFERYGPEFTFKWLSDVTRLSVNYLTREQLTISFSDIDIPKEV 653
Query: 727 IEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFR 786
E K++E + D I +KG ++ PG T+EETLE +L L+ R+ + +
Sbjct: 654 KEQIRKIIEKAKKEVDNLIERYKKGEIKPLPGRTIEETLEIEILKVLNKARDEVGEVIEK 713
Query: 787 ELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPA 846
+ PT +I+A+SG++G +N+ Q++ VGQQ+++G+R+ G++DR LPHF++ K
Sbjct: 714 HVDPTKGTMILAKSGARGKLLNLIQVVGLVGQQSISGRRMEEGYKDRVLPHFKKGDKSAK 773
Query: 847 ARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMT 906
ARGFVE+ F GL P EFFFH G++ L+DT ++T ++GYL RRLV L DL ++ D T
Sbjct: 774 ARGFVEHGFADGLDPIEFFFHAASGKDALMDTTLRTPKSGYLYRRLVSVLRDLYVENDRT 833
Query: 907 VRNATGEVVQFRYGSDGLDPTYMEG 931
VR+ G + QF +G DG+ EG
Sbjct: 834 VRDTFGNIYQFIWGEDGIAVQKSEG 858
>UniRef50_A5K7T9 Cluster: DNA-directed RNA polymerase; n=1;
Plasmodium vivax|Rep: DNA-directed RNA polymerase -
Plasmodium vivax
Length = 1946
Score = 543 bits (1341), Expect = e-153
Identities = 267/506 (52%), Positives = 352/506 (69%), Gaps = 28/506 (5%)
Query: 434 LKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNEC 493
LKY N+ + + L+ GDVVERHLVDGD+VLFNRQPSLH++SIMCH+A+V +TFRFNEC
Sbjct: 495 LKYANKRLVVENLQVGDVVERHLVDGDIVLFNRQPSLHRMSIMCHKARVMKYKTFRFNEC 554
Query: 494 VCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNG 553
VC+PYNADFDGDEMN+H+PQTEEARAEAL LM K+NL+TP+NG
Sbjct: 555 VCSPYNADFDGDEMNLHVPQTEEARAEALYLMNV----------------KNNLITPKNG 598
Query: 554 ELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAG--PDATMRIDMPPPAIIKPRK 611
E++IA TQDF++ Y+IT +DTF + + CLL DA + ID+P PAI+KP++
Sbjct: 599 EVIIALTQDFLSASYVITNKDTFLDRD-----SFCLLCSYFSDAKVNIDLPVPAILKPKE 653
Query: 612 LWTGKQIFSLIMRPNRRCEVKANLETKGKNY-TGNKDL---CVQDSYVIIRNSELVCGSM 667
LWTGKQ+ S++++PN + N E K + Y T N DL C+ DSYV SEL+CGS+
Sbjct: 654 LWTGKQLISVLIKPNTKENTIINFEIKEREYSTKNGDLKHMCLNDSYVCFYKSELICGSL 713
Query: 668 DKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLI 727
K LGS +K +FY L+ A++ M R +++ S Y N+G + GI DVTP L+
Sbjct: 714 GKKVLGS-SKYGLFYYLIHHNSSYVALKIMNRFSKLTSRYFSNKGMTIGIDDVTPSDTLL 772
Query: 728 EAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRE 787
+ K LL++GY K + I + +Q QPGCT+EETLE + + L +R A K C +
Sbjct: 773 QKKKDLLQAGYEKVNREIALYNEKKMQIQPGCTLEETLEIKVKNILDDLRNDAGKTCNQY 832
Query: 788 LHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAA 847
L N PLIM SG+KG+ INI+QMIACVGQQ + G+R+ NGF +R+LPHF H K +
Sbjct: 833 LDHLNKPLIMFNSGAKGALINIAQMIACVGQQNVTGQRIQNGFINRTLPHFNFHCKDSES 892
Query: 848 RGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTV 907
RGFV+NSFYTGL PTEFFFHTM GREGLVDTAVKTAETGY+QRRL+K+LEDL + YD +V
Sbjct: 893 RGFVQNSFYTGLNPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDFSV 952
Query: 908 RNATGEVVQFRYGSDGLDPTYMEGKD 933
R+ ++VQF YG D L+P++++ +
Sbjct: 953 RSCDKQIVQFIYGDDALNPSFVDNNN 978
Score = 258 bits (631), Expect = 9e-67
Identities = 160/413 (38%), Positives = 230/413 (55%), Gaps = 30/413 (7%)
Query: 14 KISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCG 73
+I + F + I + + ++++ + ++ ++ +P P+GVLD ++G ++ ++ CETC
Sbjct: 56 EIKSLKFGIMDKEEIIKCSEVKILNREMY-KNNTGIPYPYGVLDLKLGAHKSNSLCETCH 114
Query: 74 LGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPE 133
C GHFGYI+L P+FHVGY++ II IL ICK C+ ++L + Y
Sbjct: 115 RNFMNCSGHFGYIELNYPLFHVGYYKYIIYILYCICKVCSHILLTNEKLEFYTNLKRRTV 174
Query: 134 MSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKK 193
K+++ + K +KC C G++KK I+ K D +K
Sbjct: 175 EDKFFKRHIFKKILNSCKKVTKCYRCGYPQGVIKK-------II------KPSLDQFMK- 220
Query: 194 VLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLI 253
L + KE+ K V +++ L VLNLF+ + + LL NV+ PE L+
Sbjct: 221 -LKHVIKTKENGKMVIKE------DDLNSLYVLNLFKNMNPYHVKLL--NVE--SPEKLL 269
Query: 254 LTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWD 313
+T L VPP IRPSVV D + GT EDDLT SEI +N+ I ++ + + +
Sbjct: 270 ITALLVPPNTIRPSVVID-EHGTAEDDLTCILSEITQLNNTINNQCSNGYQTNQFLGNVE 328
Query: 314 YLQLHAALYINSEMSGIP--LAMQP-KKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTV 370
+LQL +INS+ + LA Q KPGRG+ QRLKGK+GRFR NLSGKRVDFSSRTV
Sbjct: 329 FLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTV 388
Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV 423
ISPDPN+ I EV VP +A LTYPE+V N+ L+RL+ NG PGANYV
Sbjct: 389 ISPDPNISIDEVVVPESIAMRLTYPEKVNRYNMAKLKRLIRNGTSTWPGANYV 441
Score = 112 bits (269), Expect = 6e-23
Identities = 56/100 (56%), Positives = 69/100 (69%)
Query: 1017 LTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQ 1076
+ L QL F+ KY + + PG AVG+++AQSIGEPGTQMTLKTFHFAGVASMN+T
Sbjct: 1427 VNLKQLYLFIFFNVSKYFKYISAPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTL 1486
Query: 1077 GVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
GVPR+KEIINAS I TPI+ L FA +K ++
Sbjct: 1487 GVPRIKEIINASSTIQTPILNIPLQVKDSYNFALMMKSKL 1526
>UniRef50_Q010D7 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase -
Ostreococcus tauri
Length = 1673
Score = 543 bits (1340), Expect = e-152
Identities = 304/714 (42%), Positives = 440/714 (61%), Gaps = 40/714 (5%)
Query: 226 LNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQ 285
L + + I DED +LG++ + +RP+ +IL +PVPP +RPSV D +EDDLT+K
Sbjct: 215 LQILKGISDEDCRVLGLDPEHARPDWMILQVMPVPPPPVRPSVSFDAST-RSEDDLTVKL 273
Query: 286 SEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAM-QPKKPGRGLV 344
EI+ N + R + +I E + LQ H ++++ ++G+P A+ + + + +
Sbjct: 274 MEIVRTNKNLERQEQNGAPQHVILEFTELLQYHIMTFMDNTVAGMPRALTRSGRSIKSIS 333
Query: 345 QRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQ 404
+RLKGK GR RGNL GKRVDFS+RTVI+PDPNL + E+GVP +A +TYPE V P N++
Sbjct: 334 ERLKGKAGRIRGNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPETVTPYNIE 393
Query: 405 WLRRLVCNGPDVHPG---ANYV-QQRGLKTK-KYLKYGNREKIAQELKCGDVVERHLVDG 459
L+RLV NGP PG A Y+ ++ G + ++LK + ++ L+ G VERH+V+G
Sbjct: 394 RLQRLVDNGPHPPPGETGARYIIREDGQRLDLRFLKKASEKR----LEYGYKVERHMVNG 449
Query: 460 DVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARA 519
DVVLFNRQPSLHK+SIM HR ++ P TFR N V PYNADFDGDEMNMHLPQ+ E +A
Sbjct: 450 DVVLFNRQPSLHKMSIMGHRVRIMPYSTFRLNLSVTPPYNADFDGDEMNMHLPQSYETKA 509
Query: 520 EALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTK 579
E LM ++ ++ +V+P+ + ++A QD + G LIT+RDTF K
Sbjct: 510 EVKELM--------MVPKM--------IVSPQANKPVMAIVQDTLLGCRLITKRDTFIPK 553
Query: 580 SEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKG 639
+ L D +I P PAI+KP+ LWTGKQ+FS+++ +V +
Sbjct: 554 DVFMNIIMWL---EDWDGKI--PKPAILKPQPLWTGKQVFSMMLP-----KVNLLRTSAW 603
Query: 640 KNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWR 699
+ V D+ V I EL+ G++ K T+GSG + ++ +WG A RG+
Sbjct: 604 ARDADDVTFSVDDTGVRIEQGELLTGTLCKKTMGSGG-GGLIHVTWEEWGP-IAARGLIS 661
Query: 700 LAR-MASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPG 758
+ + +Y++++ GF+ GI D + + N + + I + + L+ QPG
Sbjct: 662 QTQTLVNYWLLHHGFTVGIADTIADDETMFTINNTITKAKADVKEVIKQAQNNELELQPG 721
Query: 759 CTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQ 818
TM+++ E + L+ R+ A + L TN +M +GSKGS +NISQMIACVGQ
Sbjct: 722 MTMQQSFEQKVNQILNKARDNAGNSAQNSLKDTNNVKMMVTAGSKGSFLNISQMIACVGQ 781
Query: 819 QALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDT 878
Q + GKR+P GF+ R+LPHF + P +RGFVENS+ GLTP EFFFH MGGREGL+DT
Sbjct: 782 QNVEGKRIPYGFKGRTLPHFSKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 841
Query: 879 AVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGK 932
AVKT+ETGY+QRRLVK++ED+V++YD TVRN+ G+V+QF YG DG+D T +E +
Sbjct: 842 AVKTSETGYIQRRLVKAMEDVVVKYDGTVRNSVGDVIQFLYGEDGMDATMIESQ 895
Score = 90.2 bits (214), Expect = 3e-16
Identities = 39/69 (56%), Positives = 52/69 (75%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNI 1091
+++ + PG +G +AAQSIGEP TQMTL TFHFAGV++ N+T GVPR+KEIIN ++ I
Sbjct: 1068 RFKMALAPPGDGIGVVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKQI 1127
Query: 1092 STPIITAEL 1100
TP +T L
Sbjct: 1128 KTPSLTVAL 1136
Score = 54.8 bits (126), Expect = 1e-05
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 50 PAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTIC 109
P G+ D RMGT + A CET G + G+FG+++L PV+H G+ ++ +L+ +
Sbjct: 69 PKRGGLSDPRMGTMDRGAVCETDGCDSVQTPGYFGHLELAKPVYHHGFINVVLRVLRCVG 128
Query: 110 KECAKVML--PESLKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCP 157
++++L E K + + NP K LK + KT S CP
Sbjct: 129 YSSSQLLLHKDEDPKFAQLMRIKNP------KNRLKKLT-DACKTKSVCP 171
>UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=6; Eukaryota|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Plasmodium falciparum
Length = 2339
Score = 542 bits (1338), Expect = e-152
Identities = 266/510 (52%), Positives = 351/510 (68%), Gaps = 28/510 (5%)
Query: 434 LKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNEC 493
LKY N+ + Q L GDVVERH+ DGD+VLFNRQPSLH++SIMCH+AK+ +TFRFNEC
Sbjct: 544 LKYANKNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNEC 603
Query: 494 VCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNG 553
VC+PYNADFDGDEMN+ +PQTEEARAEAL LM K NL+TP+NG
Sbjct: 604 VCSPYNADFDGDEMNLDVPQTEEARAEALYLMNV----------------KHNLITPKNG 647
Query: 554 ELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAG--PDATMRIDMPPPAIIKPRK 611
E++IA TQDF++ Y+IT +DTF + CLL DA++ I++P PAI+KP++
Sbjct: 648 EVIIALTQDFLSASYIITNKDTFLDRD-----TFCLLCSYFSDASLYIELPIPAILKPKE 702
Query: 612 LWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGN----KDLCVQDSYVIIRNSELVCGSM 667
LWTGKQ+ S++++PN++ N E + + Y+ K LC+ DSYV SEL+CGS+
Sbjct: 703 LWTGKQLISVLIKPNKKENTIINFEIQEREYSNKFGDLKHLCLNDSYVCFYKSELICGSL 762
Query: 668 DKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLI 727
K LGS +K +FY L+ A++ M RL+++ S Y N+G + GI DV P + L
Sbjct: 763 GKKVLGS-SKYGLFYYLIHHNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLT 821
Query: 728 EAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRE 787
E K LL GY K + I+ + +Q QPGCT+EETLE + S L +R A K C +
Sbjct: 822 EKKKDLLLKGYEKVNNEIILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQY 881
Query: 788 LHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAA 847
LH N PLIM SG+KG+ INI+QMIACVGQQ + G+R+ NGF +R+LPHF H K +
Sbjct: 882 LHYLNKPLIMFNSGAKGALINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSES 941
Query: 848 RGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTV 907
RGFV+NSFYTGL+PTEFFFHTM GREGLVDTAVKTAETGY+QRRL+K+LEDL + YD +V
Sbjct: 942 RGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSV 1001
Query: 908 RNATGEVVQFRYGSDGLDPTYMEGKDRPVD 937
R+ ++VQF YG D L+P+Y++ + +D
Sbjct: 1002 RSCDKQIVQFIYGDDALNPSYIDNNNTYLD 1031
Score = 257 bits (630), Expect = 1e-66
Identities = 164/446 (36%), Positives = 239/446 (53%), Gaps = 35/446 (7%)
Query: 14 KISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCG 73
+I + F + S I + + ++++ + ++ ++ +P P+GVLD ++G ++ ++ CETC
Sbjct: 34 EIKSIRFGIMSKEDIIKYSEVKIMNREMY-KNNSGIPYPYGVLDLKLGAHKSNSVCETCN 92
Query: 74 LGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPE 133
L C GHFGYI+L PVFH+GY++ II IL ICK C+ ++L + Y
Sbjct: 93 KKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLSKEKIDFYCNLKKKST 152
Query: 134 MSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKK 193
KK+L + K +KC C G++KK I+ K D +K
Sbjct: 153 DDSFYKKHLFKRILNNCKKVNKCYICGNPQGVIKK-------II------KPSLDQFMK- 198
Query: 194 VLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLI 253
L + KE+ K + ++++ L VL LF+ I + LL + PE LI
Sbjct: 199 -LKHILKVKENGKMIIKE------EDLNSLYVLKLFKNINPYHVKLLN----IENPEKLI 247
Query: 254 LTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWD 313
+T L VPP IRPSV+ D + GT EDDLT SEI +N+ I + + + +
Sbjct: 248 ITALLVPPNTIRPSVIID-EHGTAEDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVE 306
Query: 314 YLQLHAALYINSEMSGIP--LAMQP-KKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTV 370
+LQL +INS+ + LA Q KPGRG+ QRLKGK+GRFR NLSGKRVDFSSRTV
Sbjct: 307 FLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTV 366
Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLK- 429
ISPDPN+ I EV +P +A LTYPE V N+ L+ L+ NG + PGANY+ ++ K
Sbjct: 367 ISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGANYIIKKSKKG 426
Query: 430 TKKY----LKYGNREKIAQELKCGDV 451
T Y Y N + C ++
Sbjct: 427 TDPYSDISTSYNNNSNNISSIGCSNI 452
Score = 113 bits (273), Expect = 2e-23
Identities = 56/100 (56%), Positives = 72/100 (72%)
Query: 1017 LTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQ 1076
+ L QL F+ +KY + + PG AVG+++AQSIGEPGTQMTLKTFHFAGVASMN+T
Sbjct: 1756 INLKQLYLFIFFNIYKYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTL 1815
Query: 1077 GVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
GVPR+KEIINAS +I TPI+ L + FA +K ++
Sbjct: 1816 GVPRIKEIINASNSIQTPILNIPLEVNDNYNFALMMKSKL 1855
>UniRef50_O77165 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase - Breviata
anathema
Length = 1690
Score = 537 bits (1326), Expect = e-151
Identities = 322/867 (37%), Positives = 472/867 (54%), Gaps = 65/867 (7%)
Query: 79 CVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEMSYLL 138
C GHFG++ L V+H+ Y R + +LQ +C C+++++ + S R + ++ +
Sbjct: 1 CPGHFGHVTLAKAVYHLAYIRTVCRVLQCVCMNCSRLLVDRKISASTRLRNGAVRLNEVS 60
Query: 139 KKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKKVLMDF 198
K L+ KT +C + + N V ++ G A++P +
Sbjct: 61 KMCLQY------KTCGEC-AVKTENAQVTRTGCG----------ARQPL----------W 93
Query: 199 HEAKESNKEVAAMINSGLVKEMSPLE-VLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRL 257
+K S V + G + E+ E V+ + + I DED L+G+N + +RPE +++T L
Sbjct: 94 RVSKLSITRVPRDSSGGELPEVQDSEEVVRILKNISDEDCVLIGLNPRFARPEWMMITLL 153
Query: 258 PVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCEL-IQEDWDYLQ 316
PVPP+ +RPS+ G EDDLT KQ ++ N+ R L G + IQ+ D LQ
Sbjct: 154 PVPPMTVRPSIAFG-SVGRAEDDLT-KQLSTIVKNNAQIRKLKLDGAAPINIQDTLDVLQ 211
Query: 317 LHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPN 376
++ A + ++ + + A +P + L +RL+GK+GR RG L GKRVDFS+R+VI+PDP
Sbjct: 212 INVACFFDNSVPSLEKAKNGNRPIKSLSERLRGKEGRVRGQLMGKRVDFSARSVITPDPT 271
Query: 377 LQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKY 436
L + E+GVP VA LT PE V P N+ L LV NGP +PGA YV +
Sbjct: 272 LALNELGVPRTVASNLTVPEMVSPLNIHRLAALVRNGPGTYPGAKYVIRDDGARIALTSR 331
Query: 437 GNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCT 496
G+ + G ++ERHL+DGD V+FNRQPSLHK+S+M H+ +V P +FR N V T
Sbjct: 332 GDMPIVP-----GYIIERHLMDGDHVVFNRQPSLHKMSMMGHQVRVLPYSSFRLNLSVTT 386
Query: 497 PYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELL 556
PYNADFDGDEMNMH+P + EA +E LM AV +VTP+
Sbjct: 387 PYNADFDGDEMNMHVPNSLEAISEVKNLM-----AVPF-----------QIVTPQKNSPC 430
Query: 557 IAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGK 616
+ QD + G LI++RDTF T+ LA + PD +P PAI++P+ LWTGK
Sbjct: 431 MGVVQDSLLGCSLISRRDTFLTEDVMMNLALVISYDPDK-----IPQPAILRPKPLWTGK 485
Query: 617 QIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSY--------VIIRNSELVCGSMD 668
Q FS+++ + + K + + Q+ Y V I+ +L G +
Sbjct: 486 QAFSMLLPKDLSYKGKCGFYFNAEQSVSREVAAAQEEYMNSLLDSVVRIKKGQLHTGVIT 545
Query: 669 KSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIE 728
+G + SI +IL +D G A + R+ + + Y++ RGFS G D ++
Sbjct: 546 NKAVGKSGQGSIIHILWKDQGPMAARDFLSRVQLLTNAYILTRGFSVGTEDTLADPDTLQ 605
Query: 729 AKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFREL 788
A +E +I + G L+ Q G ++ E+ EA L A K L
Sbjct: 606 AVKAEIEGAKRNVKIHIDDARAGRLKVQAGRSLVESFEAKTNKSLQDALSNAGKKSLSSL 665
Query: 789 HPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAAR 848
N +M +SGSKGS +NI Q+ VGQQ + GKR+ GF+ R+LPHF + P AR
Sbjct: 666 KYDNNFKLMIESGSKGSEMNICQITGMVGQQNVEGKRIAFGFQRRTLPHFRKDDYEPEAR 725
Query: 849 GFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVR 908
GFVENS+ +GL+P EFFFH MGGREGL+DTAVKT+E+GY+QR+L+KS+ED+ ++YD TVR
Sbjct: 726 GFVENSYVSGLSPQEFFFHMMGGREGLIDTAVKTSESGYIQRKLMKSMEDISVKYDTTVR 785
Query: 909 NATGEVVQFRYGSDGLDPTYMEGKDRP 935
NA G ++QF YG DG+D T E +D P
Sbjct: 786 NAAGMILQFAYGEDGIDGTAHENQDIP 812
Score = 90.2 bits (214), Expect = 3e-16
Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 5/161 (3%)
Query: 991 KATAGRVRALRARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQ 1050
++TA + A+ R + + +TL + K+ R ++ PG VGA+AAQ
Sbjct: 950 RSTALTMFAIMLRAQLASKVMILKHHITLDCWGYIIGEVREKFGRALVAPGEMVGAIAAQ 1009
Query: 1051 SIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIITAELMQPY--DQEF 1108
S GEP TQMTL TFH AGV + N+T GVPR+KE+IN + + TP I+ + P+ +E
Sbjct: 1010 SFGEPTTQMTLNTFHSAGVGTKNVTLGVPRLKELINVNMALRTPNISIFVQDPFCNSEEN 1069
Query: 1109 ARRVKGRI--CTSKLKVKPAEVTAVSAWAI-KVTGEPSKSC 1146
A +V I T + V AE+ + + ++TGE C
Sbjct: 1070 ATKVPLHIKHTTVRDLVSRAEIIYDPMYVVDQMTGEAYFDC 1110
>UniRef50_Q7RQQ6 Cluster: DNA-directed RNA polymerase; n=9;
Plasmodium (Vinckeia)|Rep: DNA-directed RNA polymerase -
Plasmodium yoelii yoelii
Length = 2020
Score = 530 bits (1309), Expect = e-149
Identities = 262/510 (51%), Positives = 352/510 (69%), Gaps = 28/510 (5%)
Query: 434 LKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNEC 493
LKY N++ + +LK GD+VERH+ DGD+VLFNRQPSLH++SIMCH+A+V +TFRFNEC
Sbjct: 480 LKYANKKYVIDQLKIGDIVERHICDGDIVLFNRQPSLHRMSIMCHKARVMDYKTFRFNEC 539
Query: 494 VCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNG 553
VC+PYNADFDGDEMN+H+PQTEE+RAEAL LM K NL+TP+NG
Sbjct: 540 VCSPYNADFDGDEMNLHVPQTEESRAEALYLMNV----------------KHNLITPKNG 583
Query: 554 ELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAG--PDATMRIDMPPPAIIKPRK 611
E++IA TQDF++ Y+IT +DTF + CL DA + I++P PAI+KP++
Sbjct: 584 EVIIALTQDFLSASYVITNKDTFLDRD-----LFCLXCSYFSDAKIDIELPVPAILKPKE 638
Query: 612 LWTGKQIFSLIMRPNRRCEVKANLETKGKNY-TGNKDLCV---QDSYVIIRNSELVCGSM 667
LWTGKQ+ S++++PN+ N E K + Y T N DL DSYV SEL+CGS+
Sbjct: 639 LWTGKQLISVLIKPNKNENTIINFEMKEREYSTKNGDLKYLSRDDSYVCFYKSELICGSL 698
Query: 668 DKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLI 727
K LG+ +K +FY L+ + + A++ M R ++++S Y N+G + GI DVTP + L
Sbjct: 699 GKKVLGA-SKYGLFYYLIHNNSTQIALQIMNRFSKLSSRYFSNKGMTIGIDDVTPSRVLT 757
Query: 728 EAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRE 787
+ K LL +GY K + I+ + +Q QPGCT+EETLE + S L +R A K C +
Sbjct: 758 DKKRDLLLNGYEKVNKEIILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQY 817
Query: 788 LHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAA 847
L N PLIM SG+KG+ INI+QMIACVGQQ ++G+R+ NGF +R+LPHF H K +
Sbjct: 818 LPYLNKPLIMFNSGAKGALINIAQMIACVGQQNVSGQRIQNGFINRTLPHFNFHCKGSES 877
Query: 848 RGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTV 907
RGFV+NSFYTGL PTEFFFHTM GREGLVDTAVKTAETGY+QRRL+K+LEDL + YD +V
Sbjct: 878 RGFVQNSFYTGLNPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSV 937
Query: 908 RNATGEVVQFRYGSDGLDPTYMEGKDRPVD 937
R+ +++QF YG D L+P+Y++ +D
Sbjct: 938 RSCDKQIIQFIYGDDALNPSYIDSNHTYMD 967
Score = 272 bits (666), Expect = 5e-71
Identities = 176/461 (38%), Positives = 261/461 (56%), Gaps = 38/461 (8%)
Query: 1 MPKEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRM 60
M K+ ++ +I + F + I + + ++++ + ++ + VP P+GVLD R+
Sbjct: 19 MRKDFVKDVKNNYEIKSINFGIMGKEDIIRYSEVKILNREMYKNNSNGVPYPYGVLDLRL 78
Query: 61 GTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLP-E 119
G ++ ++ CETC L C GHFGYI+L PVFH+GY++ II IL ICK C+ ++LP E
Sbjct: 79 GAHKSNSICETCKKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKTCSHILLPLE 138
Query: 120 SLKK-SYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVH 178
++ S +K N + S ++ K ++ K +KC +C + G++KK I+K
Sbjct: 139 KIEFFSNLKKKKNIDDSLFKRQFFKRIL-SICKKVNKCYNCGSPQGVIKK----IIKPSL 193
Query: 179 EKYRAKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIP 238
+++ K IVK KE+ K+V ++++ L VL LF+ I I
Sbjct: 194 DQFMKLKH---IVK--------VKENGKQVIKE------EDLNSLYVLKLFKNINPFYIK 236
Query: 239 LLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARH 298
LL + PE LI+T L VPP IRPSV+ D + GT EDDLT SEI +N+ I
Sbjct: 237 LLN----IENPEKLIITTLIVPPNTIRPSVIID-EHGTAEDDLTCILSEIAQLNNTINSQ 291
Query: 299 LASAGKCELIQEDWDYLQLHAALYINSEMSGIP--LAMQP-KKPGRGLVQRLKGKQGRFR 355
++ + + ++LQL +INS+ + LA Q KPGRG+ QRLKGK+GRFR
Sbjct: 292 SSNGYQTNQFLGNIEFLQLQVTRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFR 351
Query: 356 GNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPD 415
NLSGKRVDFSSRTVISPDPN+ I EV +P +A LTYPE V N++ L+ L+ NG +
Sbjct: 352 CNLSGKRVDFSSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIEKLKMLIRNGSN 411
Query: 416 VHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHL 456
V PGANYV +K + Y KI + D+V+R++
Sbjct: 412 VWPGANYV----IKKNVNMNYDENGKIGNSII--DIVKRYV 446
Score = 111 bits (267), Expect = 1e-22
Identities = 56/100 (56%), Positives = 70/100 (70%)
Query: 1017 LTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQ 1076
+ L QL F+ KY + + PG AVG+++AQSIGEPGTQMTLKTFHFAGVASMN+T
Sbjct: 1452 INLKQLYIFIYFNISKYFKYISSPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTL 1511
Query: 1077 GVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
GVPR+KEIINAS I TPI+ L + FA +K ++
Sbjct: 1512 GVPRIKEIINASSIIQTPILNIPLRIKDNYNFALMMKSKL 1551
>UniRef50_O27125 Cluster: DNA-directed RNA polymerase subunit A';
n=7; Archaea|Rep: DNA-directed RNA polymerase subunit A'
- Methanobacterium thermoautotrophicum
Length = 870
Score = 529 bits (1305), Expect = e-148
Identities = 296/734 (40%), Positives = 449/734 (61%), Gaps = 40/734 (5%)
Query: 219 EMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNE 278
+++P EV RI D+D +LG+N +++RPE ++LT LPVPP+ +RPS+ + +E
Sbjct: 170 KLTPSEVRERLERISDDDALILGVNPEVARPEWMVLTVLPVPPVTVRPSITLET-GERSE 228
Query: 279 DDLTMKQSEILLINDVIARHLASAGKCELIQED-WDYLQLHAALYINSEMSGIPLAMQPK 337
DDLT K +IL IN + ++ AG +LI ED W+ LQ H Y ++E SG+P A
Sbjct: 229 DDLTHKLVDILRINQRLKENM-EAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRS 287
Query: 338 -KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPE 396
+P + L QRLKGK+GRFR NLSGKRV+FS+RTVISPDPN+ I EVGVP +A+ +T P
Sbjct: 288 GRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVISPDPNISINEVGVPEIIAREVTVPV 347
Query: 397 RVFPANLQWLRRLVCNGPDVHPGANYV-QQRGLKTKKYLKYGNREKIAQELKCGDVVERH 455
V N+ +R + NGPDVHPGANYV + G K + Y + +E + + LK G +VERH
Sbjct: 348 YVTEWNIDRMREYIENGPDVHPGANYVIRPDGRKIRIYNE--TKEVVLENLKPGYIVERH 405
Query: 456 LVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTE 515
L DGD+VLFNRQPSLH++S+M H+ +V P +TFR N CVC PYNADFDGDEMNMH+ QTE
Sbjct: 406 LKDGDIVLFNRQPSLHRMSMMAHQVRVLPYKTFRLNLCVCPPYNADFDGDEMNMHVFQTE 465
Query: 516 EARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDT 575
E+RAEA LM RV + ++++PR G +I D I+G YL+T++
Sbjct: 466 ESRAEAKTLM-----------RV-----QEHILSPRFGGPIIGGIHDHISGAYLLTRKSA 509
Query: 576 FFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANL 635
F++ + Q+ + +P P + WTGK+IFS+++ + +A +
Sbjct: 510 VFSEEKVFQI----------LKKAGLPLPD--SRGRDWTGKEIFSMVLPDDLNMVYRAEV 557
Query: 636 ETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVR 695
K + + C D+YV+I N +L+ G +D+ G+ + +I ++++G + A
Sbjct: 558 CRKCEECLEME--CENDAYVVIENGQLISGVIDEKAYGAFAGKILDHI-VKEYGTDAARE 614
Query: 696 GMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQC 755
+ ++A +M+ GF+ D ++ E L + ++ D I E G L+
Sbjct: 615 FLDSATKLAIAGIMHAGFTTSTNDEEIPEEARERIEAHLRNAEARVDQLIEAYENGELEP 674
Query: 756 QPGCTMEETLEAVMLSELSSIRELAAKACFRELH-PTNAPLIMAQSGSKGSNINISQMIA 814
PG ++EETLE ++ L R+ + + N +IMA +G++GS +N++Q+ A
Sbjct: 675 LPGRSLEETLEMKIMQVLGEARDKSGEIAESYFDMDENHAVIMALTGARGSMLNLTQITA 734
Query: 815 CVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREG 874
CVGQQ++ G R+ G+++R+LPHF++ +RGFV +S+ GL P EFFFH MGGREG
Sbjct: 735 CVGQQSVRGGRISRGYDNRTLPHFKKGELGAKSRGFVHSSYKEGLDPIEFFFHAMGGREG 794
Query: 875 LVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDR 934
LVDTA++TA++GY+QRRLV +L+DL + + V + G ++Q R+G DG+DP + +
Sbjct: 795 LVDTAIRTAQSGYMQRRLVNALQDLTVDENGRVVDNRGVIIQNRFGEDGVDPAKSD-YGK 853
Query: 935 PVDLARVLADVRAK 948
VDL +++ ++R K
Sbjct: 854 IVDLDKLVEEIRLK 867
Score = 99.1 bits (236), Expect = 6e-19
Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 5/149 (3%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
+KIS + F + SP I++ + +++T + + +DG P +G++D R+G C TC
Sbjct: 6 KKISQINFGLMSPEDIRKMSVTQIVTPDTYDEDGY--PIENGLMDPRLGVIDPSLRCRTC 63
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
G EC GHFG I L PV HVG+ I IL++ C++C +V+L E+ + YR++ ++
Sbjct: 64 GAKGGECPGHFGSINLARPVIHVGFADTIHKILRSTCRKCGRVLLTETEIEEYRQRILDA 123
Query: 133 -EMSYLLKKNLKAVVHKKAKTFSKCPSCE 160
E L +K + + + KCP CE
Sbjct: 124 MEKEESLTPIIKEIYAEARR--DKCPHCE 150
>UniRef50_Q8SSC4 Cluster: DNA-directed RNA polymerase II subunit
RPB1; n=15; Eukaryota|Rep: DNA-directed RNA polymerase
II subunit RPB1 - Encephalitozoon cuniculi
Length = 1599
Score = 526 bits (1297), Expect = e-147
Identities = 307/766 (40%), Positives = 444/766 (57%), Gaps = 60/766 (7%)
Query: 189 PIVKK---VLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVK 245
P++K+ L+ F + +ESN E M+N V ++F++I DED +G ++K
Sbjct: 148 PVIKREGLTLVAFMKGEESN-EGKVMLNGE--------RVYSIFKKISDEDSVYMGFDLK 198
Query: 246 LSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKC 305
SRPE +ILT L VPP +RPS+V + EDDLT K ++I+ N + ++
Sbjct: 199 YSRPEWMILTVLLVPPPAVRPSIVMEGSL-RGEDDLTHKLADIIKSNGYLKKYEQEGAPG 257
Query: 306 ELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVD 364
++++ LQ H A +I++++ G+P A+Q +P + L RLKGK+GR RGNL GKRVD
Sbjct: 258 HIVRDYEQLLQFHVATFIDNDIGGLPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVD 317
Query: 365 FSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQ 424
FS+RTVI+PDPN+ ++EVGVP+ +AKI T+PE+V N+ L +LV GP+ HPGANYV
Sbjct: 318 FSARTVITPDPNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYV- 376
Query: 425 QRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP 484
R K L + NR I L+ G VVERH+ GDVVLFNRQPSLHK+S+M H A+V
Sbjct: 377 LRSDGQKIDLNF-NRSDI--RLEEGYVVERHMQSGDVVLFNRQPSLHKMSMMAHYARVMG 433
Query: 485 QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNK 544
+TFR N V +PYNADFDGDEMN+H+PQ+ ++AE + ++ R
Sbjct: 434 NKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAEL--------EELALVSR------- 478
Query: 545 SNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSE------AQQLAAC---------- 588
+++P++ + ++ QD +TG L T RDTF + E A L C
Sbjct: 479 -QIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSLLYAVNLEFCDIPLGDAVQT 537
Query: 589 -LLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKD 647
L G D + + PAI KP +LWTGKQ+ S ++ + + + K G+
Sbjct: 538 GLRKGKDYDIMKILRKPAIAKPMRLWTGKQVLSFVLPNLNYIGLSSEHDDDDKENIGDTR 597
Query: 648 LCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYY 707
+ +QD Y+ G +DK G+ T+ + +I+ D+G + A + + RM + +
Sbjct: 598 VIIQDGYI-------HSGVIDKKAAGA-TQGGLVHIIFNDFGPKRAAQFFDGVQRMINAF 649
Query: 708 MMN-RGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLE 766
M FS GI D K ++ + + I + L+ PG TM+E+ E
Sbjct: 650 MTGIHTFSMGIGDTIADPKTVKVVESAIRKAKEEVSALIENARQNRLERLPGMTMKESFE 709
Query: 767 AVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRV 826
+ + L+ R+++ + R L N M +GSKGS INISQ+ ACVGQQ + GKR+
Sbjct: 710 SHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRI 769
Query: 827 PNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETG 886
P GF R+LPHF + +RGFVENS+ TGL P EFFFH MGGREGL+DTA+KTAETG
Sbjct: 770 PFGFSHRTLPHFVKDDYTGKSRGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETG 829
Query: 887 YLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGK 932
Y+QRRLVK+LED +++ D +VR+ G V Q +YG DG D T++E +
Sbjct: 830 YIQRRLVKALEDAIVRQDESVRSGNGLVYQIKYGEDGFDATFLESQ 875
Score = 82.6 bits (195), Expect = 6e-14
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 8 ETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDA 67
E V ++I + F + SP ++ + + +I ++ G VP G++D RMGT +
Sbjct: 3 EAKVKKQIKSIQFGLFSPDEVRNGS-VALIVHPEVMEGG--VPKTGGLIDLRMGTTDRMY 59
Query: 68 NCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKS 124
C++CG C GHFG+I+LT P+FHVGY I +L+ +C C+K+ +P KS
Sbjct: 60 LCQSCGGDNFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKIPRKGIKS 116
Score = 81.4 bits (192), Expect = 1e-13
Identities = 43/93 (46%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 1026 LRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEII 1085
+ V K + I P VG LAAQS+GEP TQMTL TFH AGVAS +T GVPR+KEI
Sbjct: 1031 VEVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVAS-TVTMGVPRLKEIF 1089
Query: 1086 NASRNISTPIITAELMQPYDQ--EFARRVKGRI 1116
N ++N+ TP + L + + + E A+ ++ I
Sbjct: 1090 NVTKNLKTPSMKIYLDREHGKSIEAAKTIQNEI 1122
>UniRef50_Q9HM79 Cluster: DNA-directed RNA polymerase subunit A';
n=6; Halobacteriaceae|Rep: DNA-directed RNA polymerase
subunit A' - Halobacterium salinarium (Halobacterium
halobium)
Length = 971
Score = 521 bits (1285), Expect = e-146
Identities = 316/752 (42%), Positives = 439/752 (58%), Gaps = 56/752 (7%)
Query: 197 DFHEAKESNKEVAAMINSGLVKE----MSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDL 252
+F +E + + I + L E + P ++ + F IP ED+ LG+N SRPE +
Sbjct: 220 EFRPRREDREAIETAIGADLTTEDMNKLMPSDIRDWFEDIPGEDLEALGVNSDRSRPEWM 279
Query: 253 ILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQED- 311
ILT LPVPP+ RPS+ D +EDDLT K +I+ IN + AG +LI ED
Sbjct: 280 ILTVLPVPPVTARPSITLD-NGQRSEDDLTHKLVDIIRINQRFMEN-REAGAPQLIIEDL 337
Query: 312 WDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTV 370
W+ LQ H ++++E+SG P A +P + L QRLKGK+GRFRG+LSGKRV+FS+RTV
Sbjct: 338 WELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTV 397
Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR-GLK 429
ISPDP L + EVGVP VA +T V NL+ RR V NGP+ HPGANYV + G +
Sbjct: 398 ISPDPTLSLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPGANYVTRPDGRR 457
Query: 430 TKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFR 489
+ K E++A+ ++ G V+RHL+DGD+++FNRQPSLH++SIM H V P +TFR
Sbjct: 458 VRVTEKVC--EELAERVEPGWEVQRHLIDGDIIIFNRQPSLHRMSIMAHEVVVMPYKTFR 515
Query: 490 FNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVT 549
N VC PYNADFDGDEMNMH Q EEARAEA +LM RV EQ +++
Sbjct: 516 LNTVVCPPYNADFDGDEMNMHALQNEEARAEARVLM-----------RVQ-EQ----ILS 559
Query: 550 PRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKP 609
PR GE +I A QD I+G YL+T + F +++A L RID P A
Sbjct: 560 PRFGENIIGAIQDHISGTYLLTNDNPRFNETQASDLL--------RQTRIDELPAAAGTD 611
Query: 610 R---KLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGS 666
+ WTG QIFS ++ P+ +LE G TG+ V+I + +L+ G+
Sbjct: 612 EDGDQYWTGHQIFSELL-PD-----DLSLEFTGT--TGDT--------VVIEDGQLLEGT 655
Query: 667 MDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKL 726
+ +G S I + + G A + +A +A +M+ GFS GI D T +
Sbjct: 656 IADDEVGE-YGSEIVDTITKVHGNTRARIFINEVASLAMRSIMHFGFSIGIDDETVSTEA 714
Query: 727 IEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFR 786
E ++ ++S Y + I E G L+ PG T++ETLE ++ L R+ A
Sbjct: 715 RERIDEAIQSAYDRVQELIETYENGDLESLPGRTVDETLEMKIMQTLGKARDSAGDVAEE 774
Query: 787 ELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPA 846
N ++MA SG++GS +N++QM CVGQQA+ G+R+ G+EDR+L HF +
Sbjct: 775 NFDEDNPAVVMANSGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSSE 834
Query: 847 ARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMT 906
A GFVENS+ +GLTP EFFFH MGGREGLVDTAV+T+++GYLQRRL+ +L +L QYD T
Sbjct: 835 AHGFVENSYTSGLTPKEFFFHAMGGREGLVDTAVRTSKSGYLQRRLINALSELETQYDGT 894
Query: 907 VRNATGEVVQFRYGSDGLDPTYMEGKDRPVDL 938
VR+ + +VQF +G DG P + + VD+
Sbjct: 895 VRDTSDTIVQFEFGEDGTSPVQVSSNEE-VDI 925
Score = 90.2 bits (214), Expect = 3e-16
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
++I ++F + P + + +VIT + + DG P G++D R+G C+TC
Sbjct: 8 KEIGEISFGLMDPEEYRDMSATKVITADTYDDDG--FPIDMGLMDPRLGVIDPGLECKTC 65
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
G C GHFG+I+L PV HVG+ + I +L+ C+ECA ++L E K YR
Sbjct: 66 GQRSGGCNGHFGHIELAAPVIHVGFSKLIRRLLRGTCRECASLLLTEEEKDEYRENLDRT 125
Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVK 167
++ ++A+ CP C + VK
Sbjct: 126 RSLRQDVSDVMTAAIREARKKDHCPHCGEVQYDVK 160
>UniRef50_Q6IUR3 Cluster: DNA-directed RNA polymerase; n=3;
Entamoeba histolytica|Rep: DNA-directed RNA polymerase -
Entamoeba histolytica
Length = 1636
Score = 517 bits (1276), Expect = e-145
Identities = 326/921 (35%), Positives = 488/921 (52%), Gaps = 55/921 (5%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
+++ + F + S I++ ++ DG+ P G+ D RMG +K C+TC
Sbjct: 9 KRVKQIKFTLLSSEQIRKMGVCKITESTSVSSDGK--PVLGGLADPRMGPFEKGEECQTC 66
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
EC GHFGYI+LT PV++ Y + I+ +L+ +C C ++ R K I
Sbjct: 67 RGTRTECPGHFGYIELTQPVYNAIYMKYILHVLKCVCPICKRIYC----HGDERVKNIKS 122
Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVK 192
LK+ + +HK K +C ++ KK + E+ PIV
Sbjct: 123 TGEERLKE-IYEFIHKNYK------ACGVLSE--KKKDHDKHQNNEEEEEQNPCNGPIVD 173
Query: 193 KVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDL 252
L + I + + P + L +F+ + DED+ +LG + P+ +
Sbjct: 174 YELPKLKSENKLEIRRKNGIKTNEENDFKPRDALAIFKDMTDEDVRVLGFDPIDCHPKFM 233
Query: 253 ILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDW 312
I T +PVPP C+RPS+VS+ A ++DDLT+ ++ N+ R KCE + E +
Sbjct: 234 IFTLIPVPPPCVRPSIVSE-GAKESKDDLTVLYENVITANE---RLKEENQKCEGVSEYY 289
Query: 313 DYLQLHAALYINSEMSGI--PLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTV 370
+ L + M + P M KK + + +RL KQGR R NL GKRVDFS+RTV
Sbjct: 290 NKLMELQTICAKISMKNVKLPETMLRKKNFKSIEERLSSKQGRLRLNLMGKRVDFSARTV 349
Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKT 430
ISPDPNL + EVGVP VAKILT+PE V N + L++LV G + +PGA ++++ +T
Sbjct: 350 ISPDPNLSMDEVGVPTGVAKILTFPEVVTQHNKEKLQKLVSAGMNDYPGAFMLERKNGQT 409
Query: 431 KKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRF 490
+ EKI + GD V R++++GD V+FNRQPSLH++S+M H+ +V P TFR
Sbjct: 410 ---YRLNGSEKI---IDIGDTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVLPFSTFRM 463
Query: 491 NECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTP 550
N C TPYNADFDGDEMN+H+PQT EARAE LM + ++TP
Sbjct: 464 NLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLM----------------LTPTQIITP 507
Query: 551 RNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPR 610
++ ++ QD G YLIT+R+TF + + CL D T+ P PAI+KP
Sbjct: 508 QDNGPIMGIVQDTQCGSYLITKRETFIEQLVFYNILQCL-DNFDGTV----PIPAILKPI 562
Query: 611 KLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSM-DK 669
WTGKQ+F+ I+ P + N K G V DS V I + + GS+ +K
Sbjct: 563 PKWTGKQVFTQIL-PTINFH-RGNWSIKELLKNGP---AVADSDVYILDGVHLVGSLRNK 617
Query: 670 STLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEA 729
S G +S I + +D G E + + +++ RGF+ G+ D+ + + ++
Sbjct: 618 SEFGKN-RSGIIQTIFKDKGMEATKVFFNKTQATVNSWILTRGFTVGVGDIVVPQSVHDS 676
Query: 730 KNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELH 789
+E + ++ ++ Q G TM E LE+ + S L ++ + L
Sbjct: 677 IRANVEKSKKEAVKFLSHQHDDEIKVQAGNTMFENLESELGSLLEKLKNECDSITTKSLK 736
Query: 790 PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARG 849
N L M SGSKGS NI QM+A VG+Q +N R+P GF R+LPH+ + +RG
Sbjct: 737 KDNNLLAMVDSGSKGSTTNILQMVAFVGKQEINNLRIPFGFYKRTLPHYWKEDYGFVSRG 796
Query: 850 FVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRN 909
FVENS+ GL+P EFFFH M GR+G++DTAVKT++TGY+QR++VK +ED+ +YD TVR
Sbjct: 797 FVENSYVMGLSPQEFFFHAMAGRQGIIDTAVKTSDTGYIQRKMVKCMEDVQCKYDRTVRR 856
Query: 910 ATGEVVQFRYGSDGLDPTYME 930
++G++V+F YG DG+D E
Sbjct: 857 SSGDMVEFMYGGDGVDALMCE 877
Score = 85.8 bits (203), Expect = 6e-15
Identities = 37/68 (54%), Positives = 50/68 (73%)
Query: 1033 YQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNIS 1092
Y+R I PG VG++AAQSIG P TQMTL TFH AG++S ++T+GVPR+KE++N S+
Sbjct: 1068 YERSFINPGEMVGSIAAQSIGAPATQMTLNTFHHAGISSASVTEGVPRLKELLNVSKTPK 1127
Query: 1093 TPIITAEL 1100
TP + L
Sbjct: 1128 TPSMNVYL 1135
>UniRef50_Q9AVW8 Cluster: DNA-directed RNA polymerase II largest
chain; n=1; Guillardia theta|Rep: DNA-directed RNA
polymerase II largest chain - Guillardia theta
(Cryptomonas phi)
Length = 1473
Score = 516 bits (1272), Expect = e-144
Identities = 335/924 (36%), Positives = 497/924 (53%), Gaps = 67/924 (7%)
Query: 15 ISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGL 74
I + F + SP I + + ++V + F + +P G+LD+RMGT K+ C T
Sbjct: 8 IKLIQFGILSPDEILKLSVVQVDSDMTFEHN---LPKLGGLLDQRMGTVDKEFFCTTDMG 64
Query: 75 GLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPES---LKKSYRRKFIN 131
E G+FG+I L PVFH G+ ++ IL+ I +K+++ E+ +K + K ++
Sbjct: 65 SFLESPGYFGHISLNRPVFHEGFMDYVLRILRCIDHTTSKLIINENSQKIKNVLKIKNLS 124
Query: 132 PEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIV 191
++ + K L A KK K N +K I + KY + IV
Sbjct: 125 QRLNIISKLCLTACNLKKNK----------FNNFLKDEIIEKRISIQPKY--SRDGWCIV 172
Query: 192 KKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPED 251
K D E + V+A + +F +I DE LG+N KLSRP+
Sbjct: 173 AK--FDSRITSEPTRLVSAE------------RIHEIFVKITDEACEKLGLNPKLSRPDW 218
Query: 252 LILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQED 311
+I+T LPVPP IRPSV + EDDLT K +I+ N ++ + + S +LI E
Sbjct: 219 MIITVLPVPPPTIRPSVKFETLLRA-EDDLTYKLGDIIRTNKILRKAIFSCLPSQLINEQ 277
Query: 312 WDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTV 370
+ LQ H Y+N+ + + ++Q +P + + QRL+GK+GR RGNL GKRVDFS+RTV
Sbjct: 278 INLLQYHIGSYMNNSVPSLAKSLQKSGRPIKSIKQRLQGKEGRLRGNLMGKRVDFSARTV 337
Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV--QQRGL 428
I+PDPN+++ E+GVP+ +A LT+PE V N+++++ L+ NGP HPGA Y+
Sbjct: 338 ITPDPNIKLDELGVPLSIAMNLTFPEIVTSFNIEYMKFLLYNGPYKHPGAKYLIRNDNNR 397
Query: 429 KTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTF 488
+Y+KY + L+ G VERHL +GD+VLFNRQPSLHK+S+M H KV TF
Sbjct: 398 IDLRYVKYLSN----INLENGYCVERHLQNGDLVLFNRQPSLHKMSMMGHIVKVMKFSTF 453
Query: 489 RFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLV 548
R N +PYNADFDGDEMN+H PQ E+++E L+ N +V
Sbjct: 454 RLNLSATSPYNADFDGDEMNLHFPQNVESKSELKNLLMVSNC----------------IV 497
Query: 549 TPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIK 608
+P+ + ++ QD + G LIT++ F +K E L+ G +++P PAI K
Sbjct: 498 SPQGNKPIMGIVQDSLLGSMLITEKGNFLSKYEIMAYLN-LIEG----YSLNIPLPAIYK 552
Query: 609 PRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMD 668
PR LWTGKQ+ S I+ + K Y + D+ VII +L+ G +D
Sbjct: 553 PRILWTGKQLISTIIPCINLSRTCISHPEHEKAYVTS-----GDTRVIIFQGQLLSGMID 607
Query: 669 KSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIE 728
K T+G+ T + +++ +D G + + + ++ GFS GI D P K + +
Sbjct: 608 KRTIGA-TSGGLIHVIWKDIGPSACSYFISNFQIIVNNWLQLNGFSVGIGDCIPTKMVKK 666
Query: 729 AKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFREL 788
+ ++++ I + LE + L++ R++A + + L
Sbjct: 667 DVSLIIKTAKLFVKKSIKRLLSKKFNGFFNKDSNYNLENHLNKVLNNARDMAGSSAQKCL 726
Query: 789 HPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAAR 848
N M SGSKGS INISQ++ACVGQQ + GKR+P GF RSLPH+ + P R
Sbjct: 727 TSYNNLKKMIFSGSKGSLINISQIVACVGQQNVEGKRIPFGFRKRSLPHYHYKNFEPETR 786
Query: 849 GFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVR 908
GFV NS+ GL P EFFFH+MGGREGL+DTA+KT+ETGY+QRRL KS+ED+V++YD +VR
Sbjct: 787 GFVVNSYIEGLFPDEFFFHSMGGREGLIDTAIKTSETGYIQRRLSKSMEDIVVEYDFSVR 846
Query: 909 NATGEVVQFRYGSDGLDPTYMEGK 932
N E++ F YG D D Y+E +
Sbjct: 847 NNQQEIISFLYGEDCFDAVYLENQ 870
Score = 88.6 bits (210), Expect = 9e-16
Identities = 41/80 (51%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 1034 QRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNIST 1093
++ +I+PG VG ++AQSIG+P TQMTL TFHFAGV++ N+T GVPR+KEII+ +NI +
Sbjct: 1048 RKSLIQPGEMVGTISAQSIGQPATQMTLNTFHFAGVSAKNVTLGVPRLKEIIDIQKNIKS 1107
Query: 1094 PIITAELMQPYDQEFARRVK 1113
P +T L + + R+VK
Sbjct: 1108 PSLTIFLHKKCSND-PRKVK 1126
>UniRef50_Q9BMP2 Cluster: DNA-directed RNA polymerase; n=2;
Stylonychia|Rep: DNA-directed RNA polymerase -
Stylonychia mytilus
Length = 1678
Score = 514 bits (1269), Expect = e-144
Identities = 298/730 (40%), Positives = 421/730 (57%), Gaps = 39/730 (5%)
Query: 224 EVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTM 283
E L + RI DED L+G N ++SRPE++I+ L V P +RPSV S +EDDLT
Sbjct: 107 EALRVLERITDEDCELMGFNPRISRPENMIIKNLAVAPPPVRPSV-SMSNTMRSEDDLTY 165
Query: 284 KQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRG 342
+IL N + + I E LQ + A +++E+ G P KP +
Sbjct: 166 CYQKILQTNITLQNQINRGANMTTINELRTNLQYYVATVMDNEIQGQPTQKHKSGKPLKA 225
Query: 343 LVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPAN 402
+ RL+GK+GR RGNL GKRVDFS+RTVI+PDPNLQ+ ++GVP +A LT PE V N
Sbjct: 226 IRARLRGKEGRLRGNLMGKRVDFSARTVITPDPNLQLDQLGVPQQIALNLTVPETVTNEN 285
Query: 403 LQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVV 462
+ +R+L+ GP++ PGA Y+ + + + NR + + G VERHL D D V
Sbjct: 286 IDEMRKLIERGPNIWPGAKYIIRHDDRQIDLSQMRNRSEAT--IHPGFKVERHLRDNDYV 343
Query: 463 LFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEAL 522
+FNRQPSLHK+S+M HR KV P TFR N V TPYNADFDGDEMNMH+PQ+ E AE
Sbjct: 344 IFNRQPSLHKMSLMGHRVKVLPFSTFRLNLSVTTPYNADFDGDEMNMHVPQSYETMAEIK 403
Query: 523 ILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEA 582
+M N +V+P++ + ++ QD + G L T +DTF K
Sbjct: 404 EIMAVPN----------------QIVSPQSNKPVMGIVQDSLLGVMLFTLKDTFIEKELV 447
Query: 583 QQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNY 642
QL D P P I+KPR LWTGKQIFSLI+ P+ + E KG +
Sbjct: 448 MQLLMWAKYEDDK-----FPMPTILKPRPLWTGKQIFSLII-PDINLQKVG--EKKGLIW 499
Query: 643 TGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLAR 702
DL ++IR EL+CG++ K T+GS + I +I+ ++ G Y R +
Sbjct: 500 DSAGDL-----NILIRKGELICGNLTKGTIGSSSGGMI-HIIWKEKGP-YCCRDFLSNTQ 552
Query: 703 MA-SYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTM 761
+ + ++ GF+ G+ D+ K++++ + + + G L+ QPG +M
Sbjct: 553 LIINNWLHQNGFTVGVQDIIAKKEIVQKIRDSMTKFKRDVTKIQQKAQLGKLKSQPGKSM 612
Query: 762 EETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQAL 821
E+ EA + L+ R+ +L N M +GSKGSN+NISQ++ACVGQQ +
Sbjct: 613 MESFEASVNQCLNKARDDCGNMALADLSSWNRLKAMVYAGSKGSNLNISQIMACVGQQNV 672
Query: 822 NGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVK 881
GKR+P GF RSLPHF + P ++GFVEN + GLTP EFFFH MGGREGL+DTAVK
Sbjct: 673 EGKRIPFGFYKRSLPHFSKDDFGPESKGFVENCYLNGLTPQEFFFHAMGGREGLIDTAVK 732
Query: 882 TAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARV 941
TAETGY+QRRL+K+LED++++YD TVR + +++QF YG DG+ ++E D ++L ++
Sbjct: 733 TAETGYIQRRLIKALEDVMVKYDGTVRTSKEQIIQFLYGEDGMAGEHIE--DLTINLLKM 790
Query: 942 L-ADVRAKCQ 950
DV+ KC+
Sbjct: 791 KNTDVQNKCK 800
Score = 97.9 bits (233), Expect = 1e-18
Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 1009 RAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAG 1068
+A +Q ERL+ L ++ + ++ PG VG++ AQS+GEP TQMTL TFHFAG
Sbjct: 945 KAVIQQERLSKDAFNWILGEIKSRFDQALVNPGEMVGSIGAQSMGEPATQMTLNTFHFAG 1004
Query: 1069 VASMNITQGVPRVKEIINASRNISTPIITAEL--MQPYDQEFARRVKGRI 1116
V++ N+T GVPR+KEIIN ++NI TP + L D+ A + GRI
Sbjct: 1005 VSAKNVTLGVPRLKEIINVAKNIKTPSMKIFLKDKDKQDERIATIIGGRI 1054
>UniRef50_A1YIC5 Cluster: DNA-directed RNA polymerase; n=1;
Chytriomyces hyalinus|Rep: DNA-directed RNA polymerase -
Chytriomyces hyalinus
Length = 960
Score = 513 bits (1266), Expect = e-143
Identities = 307/730 (42%), Positives = 423/730 (57%), Gaps = 56/730 (7%)
Query: 227 NLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDI-KAGTNEDDLTMKQ 285
++ +I DE LLG+N SRPE +I T +PVPP C+RPSV D+ G EDDLT
Sbjct: 105 SILEKITDETCRLLGLNPDSSRPEWMIFTVIPVPPPCMRPSVHIDVANGGKGEDDLTHML 164
Query: 286 SEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGR---G 342
+ I+ N+++ ++ +S E ++ LQ+H YI++E+SG+P A+Q K GR
Sbjct: 165 TNIIRYNNLLGKNESSKTAIEYKEQ----LQIHITTYIDNEVSGVPPALQ--KGGRMIKS 218
Query: 343 LVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPAN 402
L RLKGK+GR RG+L GKRVDFS+RTVI+ DP++ I+EVGVP+ VAK LT+PERV N
Sbjct: 219 LSARLKGKEGRIRGHLMGKRVDFSARTVITGDPHISIEEVGVPLSVAKTLTFPERVTSYN 278
Query: 403 LQWLRRLVCNGPDVHPGANYV-QQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDV 461
L ++ LV N + +PGA YV +RG + + K ++ GD+VERH+V GD
Sbjct: 279 LDRMQALVNNAKN-YPGARYVINERGRRIDLEVA-----KTTPLIEIGDIVERHMVTGDT 332
Query: 462 VLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEA 521
VLFNRQPSLHK+S+M H +V P +FR N VC PYNADFDGDEMN+H+PQ+ E AE
Sbjct: 333 VLFNRQPSLHKMSMMAHIVRVMPYSSFRLNVNVCAPYNADFDGDEMNLHMPQSYETVAEL 392
Query: 522 LILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSE 581
+L S LV+P++ + + QD + G +T RDTF +
Sbjct: 393 ----------------QTLSMVSSLLVSPQSNKPVNGLVQDALCGIRKLTMRDTFVNFED 436
Query: 582 AQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRP---NRRCEVKANLE-- 636
L CL P +PPPAI KP LWTGKQI SL + A+ E
Sbjct: 437 MMDLVMCLKEFP------VIPPPAIFKPIPLWTGKQIISLCLPDIDLTGNTLTHADHEDI 490
Query: 637 ----TKGKNYTGNK-------DLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILL 685
TK N T + DS V+I++ +V G + K T+G+ + I +I+
Sbjct: 491 FRSTTKDLNETCTRKAESEFYSATPTDSRVLIQSGIIVHGYLCKKTVGA-SSGGIVHIIY 549
Query: 686 RDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYI 745
D G A + +R+ + ++ N GFS GI D + + +++ K I
Sbjct: 550 NDHGPRAACDFIDNSSRIVNAWLTNSGFSVGIGDALVSEITHAVFSSTIDTQLHKVQKTI 609
Query: 746 LEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGS 805
L+ + E+T E ++ L+ R+ A K HP N M ++GSKGS
Sbjct: 610 ESYHANELKPEGNFDCEQTKENQIVGLLAKARDSAGKTTLISGHPDNNLKQMVEAGSKGS 669
Query: 806 NINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFF 865
+NI Q+ ACVGQQ + GKR+P GF+DR+LPHF ++ PAARGFV NSF GLTP+E F
Sbjct: 670 VLNICQVSACVGQQMVEGKRIPFGFKDRTLPHFTKYDHSPAARGFVRNSFVKGLTPSELF 729
Query: 866 FHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
FH MGGREGL+DTA+KTAETGY+QRRLVK+LED+ ++ D TVRN+ +++QF YG DG D
Sbjct: 730 FHAMGGREGLIDTAIKTAETGYIQRRLVKALEDITVKSDGTVRNSRDDIIQFYYGEDGFD 789
Query: 926 PTYMEGKDRP 935
T +E + P
Sbjct: 790 GTAIEYQTFP 799
Score = 44.0 bits (99), Expect = 0.025
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 1009 RAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGT 1057
+ L + +L+ Q L + KY RG+++ G +VG +AAQSIGEP T
Sbjct: 912 KQVLYVHKLSKCQFDYLLILIKEKYHRGLVQAGESVGVIAAQSIGEPAT 960
>UniRef50_P17545 Cluster: DNA-directed RNA polymerase II subunit
RPB1-B; n=60; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II subunit RPB1-B - Trypanosoma brucei brucei
Length = 1766
Score = 508 bits (1254), Expect = e-142
Identities = 313/864 (36%), Positives = 454/864 (52%), Gaps = 50/864 (5%)
Query: 69 CETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRK 128
CETC EC GHFGYI+L PVF++G F ++ +L+ +CK C ++L + ++ +K
Sbjct: 69 CETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLL-NTREQDVHKK 127
Query: 129 FINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTD 188
+ L++ K + K + + I+G G + R +
Sbjct: 128 LQHMTGLNRLRQVAK-MAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATRGCGASQ 186
Query: 189 PIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSR 248
P V + + V ++ E +V + R+ D+D L+G + +
Sbjct: 187 PRVSRFYGIYPTL------VIKAVHEEQDAEWHADKVRQVLDRVSDDDARLMGFDPQRCH 240
Query: 249 PEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELI 308
P DL+LT LPVPP +RP++ ++D+LT + I+ N+ + R S + I
Sbjct: 241 PRDLVLTVLPVPPPQVRPAI--SFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQAA-I 297
Query: 309 QEDWDYLQLHAALYINSEMSGI-PLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSS 367
LQ H A Y N+ + P + K + L +RLKGK GR RGNL GKRVDFS+
Sbjct: 298 DRSRALLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSA 357
Query: 368 RTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRG 427
RTVI+ DPN+ + EVGVP VA LT+PERV N + L V+P ANY+
Sbjct: 358 RTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTEFARR--TVYPSANYIHHPN 415
Query: 428 LKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRT 487
K +R K+ L GDVVERH+++GDVVLFNRQP+LH++S+M HR +V T
Sbjct: 416 GTITKLALLRDRSKVT--LNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNT 473
Query: 488 FRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNL 547
FR N TPYNADFDGDEMN+H+PQ+ +AE + +M N
Sbjct: 474 FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMM----------------MVPKNF 517
Query: 548 VTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAII 607
V+P + QD + G Y +T +DTF K Q +A L D +P PAI+
Sbjct: 518 VSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWL----DLWQ---LPIPAIL 570
Query: 608 KPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSM 667
KPR LWTGKQ+FSLI+ EV + + DS V+IR +L+CG +
Sbjct: 571 KPRPLWTGKQVFSLILP-----EVNHPATPQDR-----PPFPHNDSVVMIRRGQLLCGPI 620
Query: 668 DKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLI 727
KS +G+ S+ +++ + G + R + + R+ +++++N GFS G+ D +
Sbjct: 621 TKSIVGA-APGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTL 679
Query: 728 EAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRE 787
N +L + TL + G T+ ++ EA + S L+ RE AAK
Sbjct: 680 RQMNDVLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSN 739
Query: 788 LHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAA 847
+ TN+ +M ++GSKG+++NI Q+ VGQQ + G R+P GF R+LPHF +
Sbjct: 740 VRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETS 799
Query: 848 RGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTV 907
RG + GL P EFFFHTM GREGL+DTAVKT++TGYLQR+L+K+LED+ YD TV
Sbjct: 800 RGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTV 859
Query: 908 RNATGEVVQFRYGSDGLDPTYMEG 931
RNA E++QF YG DGLD +EG
Sbjct: 860 RNANDELIQFMYGEDGLDGARIEG 883
Score = 91.1 bits (216), Expect = 2e-16
Identities = 41/82 (50%), Positives = 55/82 (67%)
Query: 1026 LRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEII 1085
L+ KY + + PG +GA+AAQS GEP TQMTL TFH AG++S N+T GVPR+ E++
Sbjct: 1067 LKEIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELL 1126
Query: 1086 NASRNISTPIITAELMQPYDQE 1107
N SRN +T L PYD++
Sbjct: 1127 NVSRNQKHASMTVSLFPPYDEK 1148
>UniRef50_Q8LLJ6 Cluster: DNA-directed RNA polymerase; n=1;
Ochromonas danica|Rep: DNA-directed RNA polymerase -
Ochromonas danica
Length = 1064
Score = 497 bits (1225), Expect = e-139
Identities = 295/720 (40%), Positives = 413/720 (57%), Gaps = 41/720 (5%)
Query: 218 KEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVS-DIKAGT 276
+E+S E + R+I DED+ +LG N K SRP+ +++T LPVPP +RP+V D+++
Sbjct: 159 RELSATEAYEVLRKISDEDVEMLGFNPKYSRPDWMVVTVLPVPPPHVRPTVTEGDVQS-- 216
Query: 277 NEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQP 336
+DDLT + + I+ N ++ + G +IQE LQ H ++E P Q
Sbjct: 217 -QDDLTYQLTNIVKTNLILKDTIMKGGSKLIIQEYEKALQAHVNALFDNERDDNPRVTQK 275
Query: 337 K-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVP-VHVAKILTY 394
+P + + QRLKGK+GR RGNL GKRVDFS+RTVI+ DPNL I +VGVP ++ +
Sbjct: 276 TGRPLKTVRQRLKGKEGRLRGNLMGKRVDFSARTVITADPNLSIDQVGVPRLYCFDLDCS 335
Query: 395 PERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVER 454
N+ LR +V GP PGA Y+ + K + + +L+ G VER
Sbjct: 336 CNSDNHINIDELRDMVARGPLEWPGARYIVRADGVRIDLRKVRSSNDV--QLEYGWTVER 393
Query: 455 HLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQT 514
HL D D+VLFNRQPSLHK+S M HRAKV TFR N V TPYNADFDGDEMN+H+PQ+
Sbjct: 394 HLRDDDIVLFNRQPSLHKMSTMGHRAKVLDWSTFRLNLSVTTPYNADFDGDEMNLHVPQS 453
Query: 515 EEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRD 574
ARA+A LM ++ R N+VTP++ ++ QD + G +T+RD
Sbjct: 454 LTARADAQELM--------MVPR--------NIVTPQSNRNVMGIVQDALLGVTRMTKRD 497
Query: 575 TFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKAN 634
F K L T ++P PAI+KP+ LWTGKQ+FS+I C K N
Sbjct: 498 VFVDKEVVMNTMVWL-----PTWDGNIPAPAILKPKPLWTGKQLFSMI------CP-KIN 545
Query: 635 LETKGKNYTGNKDLC----VQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGE 690
+ KN+ +K++ DS V+I + L+ G +DK+ +G+ + SI +I G
Sbjct: 546 YRGRSKNHVEDKNVTDPFNYLDSEVLIHSGNLLQGIVDKNIVGA-SGGSIVHICWLSKGW 604
Query: 691 EYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEK 750
E M ++ + +Y+M+N +S G+ D I A L K + + ++
Sbjct: 605 EETRDFMNQIQAVVNYWMVNTSYSVGVSDTVADATTINAIQSTLNEAKEKVKAIMTKAQE 664
Query: 751 GTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINIS 810
G+L+ PG + E+ E + L+ R KA R L NA +GSKGS +NIS
Sbjct: 665 GSLKMMPGKPLMESFEMXINEVLNDARSTVGKAAQRSLKERNAIKGTVMAGSKGSELNIS 724
Query: 811 QMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMG 870
Q+IACVGQQ + GKR+ GF R+LPHF + +RGFVENS+ GL+P EFFFH MG
Sbjct: 725 QIIACVGQQNVQGKRIAYGFNQRTLPHFAKDDLGMESRGFVENSYLRGLSPQEFFFHAMG 784
Query: 871 GREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYME 930
GREG +DTAVKTAETGY+QRRLVK++E ++ QYD T+RN+ G V+QF YG DG+D +E
Sbjct: 785 GREGCIDTAVKTAETGYIQRRLVKAMETVMAQYDTTLRNSRGCVIQFLYGEDGMDAQRIE 844
Score = 52.0 bits (119), Expect = 9e-05
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 78 ECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKK 123
EC GHFG+I+L VFH G+ ++ IL+ +C C++++L E + K
Sbjct: 1 ECPGHFGHIELHRAVFHCGFIDEVVRILRCVCFHCSRLLLDEKIPK 46
Score = 42.3 bits (95), Expect = 0.076
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 13/157 (8%)
Query: 908 RNATGEVVQFRYGSDGLDP-TYMEGKDRPVDLARVLADVRAKCQDKNAEPLD-GDGIVLA 965
R + E++ R DP TY+ PV++ R++ + + + + EP IVL
Sbjct: 917 RGSLREIMGCRGSGSESDPNTYL-----PVNIDRLIWNAQRQFRININEPCPMHPRIVLD 971
Query: 966 AEETLALDDFKT--STDEFKNELLSFLKATAGRVRALRARYAGCGRAALQLERLTLTQLV 1023
A + L +D +D E S AT +R++ A + L+ RLT L
Sbjct: 972 AVKKLCQEDLLIVRGSDPISREAQS--NATLLFQILVRSKLAT--KRVLRDYRLTKDALE 1027
Query: 1024 RFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMT 1060
+ ++ V+ PG G LAAQSIGEP TQMT
Sbjct: 1028 WVVGAIVSDFRASVVHPGEMAGVLAAQSIGEPATQMT 1064
>UniRef50_O96452 Cluster: DNA-directed RNA polymerase; n=1;
Antonospora locustae|Rep: DNA-directed RNA polymerase -
Antonospora locustae (Nosema locustae)
Length = 1553
Score = 490 bits (1209), Expect = e-137
Identities = 303/787 (38%), Positives = 458/787 (58%), Gaps = 68/787 (8%)
Query: 189 PIVKKV-LMDFHEAK-ESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKL 246
P++KK L F K E N E M+N V N+F++I +ED+ LG N+K
Sbjct: 146 PVIKKEGLSLFAYMKGEENNEGKVMLNGE--------RVYNIFKKINNEDLEFLGFNIKY 197
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGT--NEDDLTMKQSEILLINDVIARHLASAGK 304
SRPE +IL+ L V P +RPS+V + GT EDDLT K S+I+ N + ++
Sbjct: 198 SRPEYMILSVLLVAPPAVRPSIVME---GTLRGEDDLTYKYSDIIKSNQNLKKYEEEGAP 254
Query: 305 CELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRV 363
+I++ +Q H A I++E+SG P A+Q +P + + RLKGK+GR RGNL GKRV
Sbjct: 255 AHIIRDYEQLVQFHVATLIDNEISGQPQALQKNGRPLKAISARLKGKEGRLRGNLMGKRV 314
Query: 364 DFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV 423
DFS+R+VI+ DPN+ ++E+GVP+ VA I T+PERV NL LR+LV NGP+ +PGANY+
Sbjct: 315 DFSARSVITADPNISLEELGVPMKVAMIHTFPERVTSFNLNKLRKLVSNGPNKYPGANYL 374
Query: 424 QQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQ 483
+R + L + + I +E G VVERH+++GD+VLFNRQPSLHK+S+M H+ KV
Sbjct: 375 IRRD-GQRIDLNFSRGDVILEE---GYVVERHMLNGDLVLFNRQPSLHKMSMMAHKVKVM 430
Query: 484 PQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQN 543
TFR N PYNADFDGDEMN+H+PQ+ ++AE ++ ++ VS
Sbjct: 431 DGLTFRLNLSATAPYNADFDGDEMNLHMPQSYNSKAE-----------LSELMLVS---- 475
Query: 544 KSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPP 603
++++P++ + ++ QD + G +T + F + E L+ + R ++
Sbjct: 476 -KHIISPQSNKPVMGIIQDTLLGVCRLTSKGVFIKREE----FCNLVYASNLVARANI-K 529
Query: 604 PAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELV 663
PAI +P+ L+TGKQ+FSL + P N+ +K V+I + L+
Sbjct: 530 PAIARPKILYTGKQLFSLTL-PK-------------LNFFRDK--------VVIMDGVLL 567
Query: 664 CGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYM-MNRGFSFGIIDVTP 722
G + K ++G+ + S+ +I+ D+G E R + L ++ S Y+ + FS GI D
Sbjct: 568 NGVICKKSVGT-AQGSLIHIIANDYGHEEITRFIDSLQKLISTYLTLISTFSVGIGDTIS 626
Query: 723 GKKLIEAKNKLLESGYSKCDGYILE-MEKGTLQCQPGCTMEETLEAVMLSELSSIRELAA 781
+ + ++ + ++ I + +G+L+ PG ++ETLE+ + L+ R+++
Sbjct: 627 SPETMAHISRAIGDAKAEVKQLIYDSRRRGSLEKLPGMNLQETLESKINLALNKARDISG 686
Query: 782 KACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERH 841
L+ N M ++GSKGS INISQ+ +CVGQQ + KR+P GF R+LPHF ++
Sbjct: 687 TRAVESLNHLNGLKQMLKAGSKGSYINISQITSCVGQQNIESKRIPFGFRQRTLPHFVKN 746
Query: 842 SKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL 901
P +RGFV NS+ +GL P EFFFH MGGREGL+DTA KTAETGY+QRR+VK++ED +
Sbjct: 747 DYGPESRGFVTNSYLSGLNPEEFFFHAMGGREGLIDTACKTAETGYIQRRIVKAMEDARI 806
Query: 902 QYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNAEPLDGDG 961
+YD +VR ++ V QF YG D D TY+E + PV+ +R + C K L+ D
Sbjct: 807 EYDGSVRGSS-TVYQFMYGEDNFDSTYLETQAFPVE-SRCSEIKLSVCSFKLHGMLENDS 864
Query: 962 IVLAAEE 968
+ A E
Sbjct: 865 ALQAIME 871
Score = 90.2 bits (214), Expect = 3e-16
Identities = 49/100 (49%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNI 1091
K+ RG+I VG LAAQSIGEP TQMTL TFH+AGVA ITQGVPR+KEIIN ++NI
Sbjct: 1015 KFVRGIISTNEMVGTLAAQSIGEPATQMTLNTFHYAGVAQA-ITQGVPRLKEIINVAKNI 1073
Query: 1092 STPIITAELMQPYDQEFARRVKGRICTSKLKVKPAEVTAV 1131
TP L E A++V I +++ +E+ +
Sbjct: 1074 RTPSHKIYLKPGSTIEQAKKVASEIEYINIEMVCSEIKII 1113
Score = 79.4 bits (187), Expect = 5e-13
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
+ +++ + F + SP I+ S+ + +I L++G VP G++D RMGT ++D C
Sbjct: 7 IKKRVKAIQFGLFSPEEIRASS-VALIRYPETLENG--VPKESGLIDLRMGTTERDYLCA 63
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVML 117
TC C GHFG+I+L P+FHVG+ I +L+ +C C+KV +
Sbjct: 64 TCNQDNYVCAGHFGHIELVKPMFHVGFISRIKKVLECVCFYCSKVRI 110
>UniRef50_Q3SE61 Cluster: DNA-directed RNA polymerase; n=2; Paramecium
tetraurelia|Rep: DNA-directed RNA polymerase - Paramecium
tetraurelia
Length = 1751
Score = 477 bits (1177), Expect = e-133
Identities = 342/1000 (34%), Positives = 517/1000 (51%), Gaps = 76/1000 (7%)
Query: 14 KISHVTFNVDSPSLIQQ-SAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
K+ V F + S LI++ + IE+ K L + P +G+ D RMG N C+TC
Sbjct: 17 KVRRVEFGLMSHELIKEWTGDIEI--KELQTNELDGTPKQNGLNDLRMGVNTNAQKCKTC 74
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
G C GHFG I+L PV+HVG+ + + +L+ IC C K+ P+S + + F
Sbjct: 75 G-ETKYCQGHFGRIELNKPVYHVGFLQIVKKVLKCICHSCGKLRQPQS--EDAWQSFQKA 131
Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVK 192
+ L +K L +V K + CE +++ G EK + I
Sbjct: 132 KEHRLNRKRLNEIV----KLLGRIEKCETSKHKQEENQ-GNDDFCGEKIPTR--IQAING 184
Query: 193 KVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDL 252
++ + ++ KE A KE++ L +F++I DED +LG K SRP DL
Sbjct: 185 QIKIQYN-----TKEAA--------KELTAERCLEIFKKIRDEDAIILGFT-KDSRPRDL 230
Query: 253 ILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDW 312
I+ L V P +RP++ + A +D T IL N+ IA + A + L E
Sbjct: 231 IIKFLLVMPPQVRPAIEMN-PARIAQDQYTQIYKSILQKNNEIANCSSDAERVRLAPE-- 287
Query: 313 DYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVIS 372
L A I+SE +G + M+ +P + + RLKGK+GRFR NL GKRVDF +R+VIS
Sbjct: 288 --LMREVAKIIDSEKAG-KIKMKSTQPLKSIRARLKGKEGRFRQNLMGKRVDFCARSVIS 344
Query: 373 PDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKK 432
PD NL + E+GVP VA LT PE V NL+ + +L + R + K
Sbjct: 345 PDANLGMDELGVPQIVADQLTIPEEVTEYNLERVIQLAKTNKIKYVIVPITDPRSKQRKF 404
Query: 433 YLKY----GNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTF 488
Y ++I Q++ G +VER L DGD VLFNRQP+LH++S+M HR ++ P TF
Sbjct: 405 QALYFDFTDTEDQIRQKINQGVIVERCLQDGDFVLFNRQPTLHRMSMMGHRVRILPYSTF 464
Query: 489 RFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLV 548
R N VCTPYNADFDGDEMNMH+PQ+ E AE L +H + R +V
Sbjct: 465 RLNLSVCTPYNADFDGDEMNMHVPQSYETIAELKYL--AH------VPR--------QIV 508
Query: 549 TPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIK 608
TP++ + ++ QD + G L TQRDTF T+ + L ++ T ++P PAI+K
Sbjct: 509 TPKSNQPVMGIVQDSLLGCCLFTQRDTFLTRDQVMHL---MMWNEQFTG--ELPMPAILK 563
Query: 609 PRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMD 668
P++LWTGKQI S+I+ + E + E + N D D + I+ LV G +
Sbjct: 564 PQELWTGKQIMSMIIPQSINTE-RGIREDDLRKPNWNAD----DKSLCIQRGSLVSGIFN 618
Query: 669 KSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLI- 727
K +G G S+ ++ D G E + M R+ + +++ F+ G D+ P L+
Sbjct: 619 KELVGQGA-GSVVHLCWLDLGAEKTLEFMTSCQRIVNNWLIMHSFTVGCQDIAPHINLVA 677
Query: 728 --EAKNKLLESGYSKCDGYILEMEK--GTLQCQPGCTMEETLEAVMLSELSSIRE-LAAK 782
E ++K + Y K L+ +K Q G + ++ E +L+ +R+ + +K
Sbjct: 678 ETEKRSKEQDEEYIKLLQIFLDAKKIQDNRYHQKGKRIMDSFEYSFNMKLNKVRDDINSK 737
Query: 783 ACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHS 842
N M + SKG N++Q+ + VGQQ L KR+ GF R+LPHF +
Sbjct: 738 VTETIDQIRNCMYKMIWAKSKGEASNLAQITSLVGQQNLESKRIQFGFAYRTLPHFSKFD 797
Query: 843 KIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
P ARGFV ++F+ GL PTEFFFHTMGGR+GL+DTAVKT+ TGY+QR+L+K++ED+ ++
Sbjct: 798 YGPEARGFVASNFFKGLKPTEFFFHTMGGRDGLIDTAVKTSRTGYIQRKLIKAVEDVFVR 857
Query: 903 YDMTVRNATGEVVQFRYGSDGLDPTYMEGKD-RPVDLARVLADVRAKCQDKNAEPLDGDG 961
YD + R++ G V QF YG D + ++E ++ + V+L+ A + K + E G
Sbjct: 858 YDSSCRDSVGAVYQFHYGEDKMAAEFIEHQEIKCVNLSN--AQLEEK-YELIKEQWFGSE 914
Query: 962 IVLAAEETLALDDFKTSTDEFKNELLSFLKATAGRVRALR 1001
I + L D K ++F+ + L LK ++ +R
Sbjct: 915 IRQKYQNILTEDVIKDIEEDFEGQAL--LKGEFDEIKKIR 952
Score = 80.6 bits (190), Expect = 2e-13
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 1016 RLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGV-ASMNI 1074
RLT + +K ++ + PG AVGA+AAQS+GEP TQMTL TFH +GV N+
Sbjct: 1052 RLTPEAFQELISEIIYKLKKSMAHPGEAVGAIAAQSLGEPTTQMTLNTFHKSGVTGDKNV 1111
Query: 1075 TQGVPRVKEIINASRNISTPIITAELMQPYD 1105
T GVPR++E+++AS+ TP +T P +
Sbjct: 1112 TLGVPRLQELLDASKKTKTPSLTIYFDPPLE 1142
>UniRef50_Q8TCW3 Cluster: DNA-directed RNA polymerase; n=17;
Metazoa|Rep: DNA-directed RNA polymerase - Homo sapiens
(Human)
Length = 435
Score = 472 bits (1164), Expect = e-131
Identities = 232/372 (62%), Positives = 282/372 (75%), Gaps = 6/372 (1%)
Query: 751 GTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINIS 810
G LQ QPGCT EETLEA++L ELS IR+ A AC REL +N+PL MA GSKGS INIS
Sbjct: 3 GKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINIS 62
Query: 811 QMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMG 870
QMIACVGQQA++G RVP+GFE+RSLPHFE+HSK+PAA+GFV NSFY+GLTPTEFFFHTM
Sbjct: 63 QMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMA 122
Query: 871 GREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYME 930
GREGLVDTAVKTAETGY+QRRLVKSLEDL QYD+TVR++TG+++QF YG DGLDP ME
Sbjct: 123 GREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 182
Query: 931 GKDRPVDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFKNELLSFL 990
GKD P++ RVL +++A + L + ++L E + +F D F E+ F+
Sbjct: 183 GKDEPLEFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKKSEFLCCQDSFLQEIKKFI 242
Query: 991 KATAGRVRALRARYA----GC--GRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAV 1044
K + +++ R +Y G R QL+R+T TQ+ +FL C KY R +EPG+AV
Sbjct: 243 KGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAV 302
Query: 1045 GALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIITAELMQPY 1104
GAL AQSIGEPGTQMTLKTFHFAGVASMNIT GVPR+KEIINAS+ ISTPIITA+L +
Sbjct: 303 GALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDD 362
Query: 1105 DQEFARRVKGRI 1116
D ++AR VKGRI
Sbjct: 363 DADYARLVKGRI 374
>UniRef50_Q9BHZ7 Cluster: DNA-directed RNA polymerase; n=2;
Glugeidae|Rep: DNA-directed RNA polymerase - Loma
acerinae
Length = 894
Score = 464 bits (1144), Expect = e-129
Identities = 336/995 (33%), Positives = 525/995 (52%), Gaps = 118/995 (11%)
Query: 84 GYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEMSYLLKKNLK 143
G++ L PVFHVGY I +L+T+C C++ LK I+ EMS++++ +
Sbjct: 1 GHMDLVKPVFHVGYMNKIKKVLETVCFYCSR------LKGYDVSNSIDAEMSHVVETIVS 54
Query: 144 AVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKKVLMDFHEAKE 203
+ K K S + K + +H ++K+P L F + +E
Sbjct: 55 EEKKENLKNKKKIKSLNFWWSLCKAKTA----CMH--CQSKQPLIKRDGLSLTAFIKGEE 108
Query: 204 SNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLC 263
S E ++N +V ++F+RI E+ +LG + K SRPE +I++ L V +
Sbjct: 109 ST-EGKVILNGE--------KVSSIFKRISTEENEMLGFDEKYSRPEWMIISVLNVHAMS 159
Query: 264 IRPSVVSDIKAGT--NEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAAL 321
+RPSVV + GT EDDLT K S+I+ N + +H +I++ + LQ H A
Sbjct: 160 VRPSVVLE---GTLRGEDDLTHKLSDIVKCNKNLEKHEKEGAPGHIIRDYENLLQYHVAT 216
Query: 322 YINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQ 380
+++ + G+P ++Q +P + + RLKGK+GR RGNL GKRVDFS+R+VISPD NL +
Sbjct: 217 LMDNSIPGLPQSLQKSGRPLKSISARLKGKEGRMRGNLMGKRVDFSARSVISPDSNLSLD 276
Query: 381 EVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNRE 440
EVGVP+ +AKI T+PE+V N+Q L++L+ NGP+ +PGAN+V + ++ L+Y
Sbjct: 277 EVGVPIQIAKIHTFPEKVTSFNIQKLQKLIDNGPNKYPGANFVTRE--TSEIDLRY---N 331
Query: 441 KIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNA 500
KI+ + + + R + ++ Q L +S+M H+ + P RTFR N V TPYNA
Sbjct: 332 KIS---RTNNRMHRRATHDSEISYSLQTLLCIMSMMAHKPRFMPGRTFRLNLSVTTPYNA 388
Query: 501 DFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAAT 560
DFDGDEMN+H+PQ+ RAE + +++V K N+V+ + + ++
Sbjct: 389 DFDGDEMNLHMPQSYNTRAE-----------LEYLVKV-----KHNVVSCQGNKPVMGIV 432
Query: 561 QDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDM---PPPAIIKPRKLWTGKQ 617
QD + G ++T FF +L + T+ + + PAI++P+KL+TGKQ
Sbjct: 433 QDSLVGVKIMTGDSIFFDLFNLNKLFFQIDFPDSNTLLMKLAYKERPAILRPKKLFTGKQ 492
Query: 618 IFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTK 677
+FS ++ E+ NY V+++ L+ GS+DK +G+
Sbjct: 493 VFSFLLP-----EI---------NY--------HRGDVLVKKGILLHGSIDKKIVGTSQG 530
Query: 678 SSIFYILLRDWGEEYAVRGMWR-LARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLES 736
S I + L E Y + + L + +++ GFS GI D IE + ++
Sbjct: 531 SLIHVLCL----ENYEILHFFNSLQLIVHAFLLMHGFSMGIEDAVTDTYTIEKITESIQK 586
Query: 737 GYSKCDGYIL--EMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKAC-------FRE 787
+K D + L E KG ++ PG ET E+ + L+ R+ + + +R+
Sbjct: 587 --AKLDAFYLIEECRKGQMKKLPGMNFRETFESRITQILNKARDTSGRYTSDSFAPEYRK 644
Query: 788 LHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFE-DRSLPHFERHSKIPA 846
P N L+M ++GSKGS INISQ+IACVG Q + G R+ GF R+LPHF + P
Sbjct: 645 GKPFNNILMMVEAGSKGSLINISQIIACVGPQNVEGHRI--GFSAQRTLPHFHKDDNRPE 702
Query: 847 ARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMT 906
+RGFVENS+ +GL P EF+FH MGGREGL+DTAVKTAETGY+QRRL+K++E+ + +D +
Sbjct: 703 SRGFVENSYLSGLRPDEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMENCKISFDGS 762
Query: 907 VRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNAEPLDGDGIVLAA 966
VR+ E++ F YG DG D ++ RV C P + D ++
Sbjct: 763 VRSEQ-EIISFNYGDDGFDAA-------KIERVRV-------CDSTFYLPFNFDRLINDK 807
Query: 967 EETLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYAGCGRAALQLERLTLTQLVRFL 1026
+ A K STD K +L++ LK + ++A +L+RL+L +L +
Sbjct: 808 GSSPA----KISTDSVKTKLINELKQFTSNL-VIKAYVT---ENTPRLQRLSLNELTELI 859
Query: 1027 RVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTL 1061
+ +Y+ + VG LA+QSIGEP TQMTL
Sbjct: 860 QKVKSRYRAALCPMNEMVGTLASQSIGEPATQMTL 894
>UniRef50_Q9BHM4 Cluster: DNA-directed RNA polymerase; n=1;
Pleistophora sp. LS|Rep: DNA-directed RNA polymerase -
Pleistophora sp. LS
Length = 897
Score = 451 bits (1111), Expect = e-125
Identities = 283/745 (37%), Positives = 424/745 (56%), Gaps = 67/745 (8%)
Query: 220 MSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTR-LPVPPLCIRPSVVSD--IKAGT 276
+S +V +F RI D D LG + + P L+++ L VPP C RPS+ + ++A
Sbjct: 84 LSGEKVAEIFARITDGDCKALGFDSVNAHPSSLLISSVLVVPPAC-RPSISLEGFLRA-- 140
Query: 277 NEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQP 336
EDDLT K S+I+ N + ++ A +I+E LQ H Y+++E++G P A+Q
Sbjct: 141 -EDDLTHKLSDIIKSNKTLRKNEAEGAPAHVIREYEQLLQFHVNTYMDTEIAGQPQALQK 199
Query: 337 K-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYP 395
+P + + R+KGK+GR RGNL GKRVDFS+R+VI+ +PN+ + E+GVP +A I T+P
Sbjct: 200 SGRPIKSISSRIKGKEGRIRGNLMGKRVDFSARSVITAEPNIDLDELGVPREIAVIETFP 259
Query: 396 ERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERH 455
E+V N+ L LV GP +PGANYV RG K L++ + EL+ G VERH
Sbjct: 260 EKVNSYNIIRLSELVKRGPAQYPGANYVI-RGDGMKIDLRFTR----SVELQIGWTVERH 314
Query: 456 LVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTE 515
+VDGD VLFNRQPSLHK+S+MCHR +V ++FR N V TPYNADFDGDEMN+H+PQ
Sbjct: 315 MVDGDYVLFNRQPSLHKMSMMCHRVRVMEGKSFRLNLSVTTPYNADFDGDEMNLHMPQ-- 372
Query: 516 EARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDT 575
S+ TAV + L ++++P++ + ++ QD + G Y+++
Sbjct: 373 -----------SYITAVEL---RRLTHVPLHILSPQSNKPIMGIVQDTLVGVYIMSGDSI 418
Query: 576 FFTKSEAQQLAACLLAGPDATMRIDMP-PPAIIKPRKLWTGKQIFSLIMRPNRRCEVKAN 634
F +S L T+ ID PAI++P +++TGKQ+FS+++ P
Sbjct: 419 FIEESTTHNLM--------YTVDIDSKCTPAILRPERIYTGKQLFSMVLPPTL------- 463
Query: 635 LETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAV 694
+ D+ I+ + L+ G + K +GS ++S+ +IL D+G + A+
Sbjct: 464 -------------IYCTDNIKIV-DGVLIKGVVSKKVVGS-VRNSLIHILYLDYGAKVAL 508
Query: 695 RGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQ 754
+ R+ + ++ + GFS GI D N+ L+ +G +LE L+
Sbjct: 509 SFFNNIQRVVTAFLSSYGFSCGIGDTIADFDTSMKINEELKDAVDSVNGLLLEGRDRKLR 568
Query: 755 CQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIA 814
+PG ++ ET E+ ++ L+ R+ + + L N M +GSKGS INISQ+ A
Sbjct: 569 RRPGLSLRETFESSVMQILNKARDTSGTVAQKSLSSDNNLRTMVLAGSKGSFINISQVTA 628
Query: 815 CVGQQALNGKRVPNG--FEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGR 872
CVGQQ + G+R+ G + R+LPHF R P ARGFV NS+ +GL P EF+FH MGGR
Sbjct: 629 CVGQQTVEGRRIACGYYYHKRTLPHFSRDDLSPRARGFVVNSYLSGLNPDEFYFHAMGGR 688
Query: 873 EGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRY--GSDGLDPTYME 930
EGL+DTA KTAETGY+QRRL+K++E+L ++YD V G +V+F Y G+DG D +
Sbjct: 689 EGLIDTACKTAETGYMQRRLIKAMENLRVEYDGNV--GDGGIVRFGYGDGNDGWDAN-IS 745
Query: 931 GKDRPVDLARVLADVRAKCQDKNAE 955
G+ R V + + A Q K+ E
Sbjct: 746 GECRGVQYNPIGEYIDAYIQCKSIE 770
Score = 39.5 bits (88), Expect = 0.54
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 84 GYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKS 124
G+I+L PVFH+GY I IL+++C C+++ +S +S
Sbjct: 1 GHIELCKPVFHIGYIGRIKKILESVCFYCSRIKNGDSNTRS 41
Score = 39.1 bits (87), Expect = 0.71
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTL 1061
K ++ I P VG LAAQSIGEP TQMTL
Sbjct: 868 KIKKARINPMEMVGTLAAQSIGEPATQMTL 897
>UniRef50_Q7T6X5 Cluster: DNA-directed RNA polymerase subunit 1;
n=1; Acanthamoeba polyphaga mimivirus|Rep: DNA-directed
RNA polymerase subunit 1 - Mimivirus
Length = 1495
Score = 446 bits (1100), Expect = e-123
Identities = 299/930 (32%), Positives = 475/930 (51%), Gaps = 95/930 (10%)
Query: 15 ISHVTFNVDS-PSLIQQSAHIEV--ITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCET 71
+ + F ++S S+I+ SA ++ IT+ P GV+D+R+G + C T
Sbjct: 18 VERIEFCINSNESIIRHSAIVDPNGITEAETFNSNNNEPVQGGVIDKRLGVTESHLECST 77
Query: 72 CGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKK--SYRRKF 129
CG C GHFG+I+ PVFH+GY + IL IC C K+++ ++ K+ + +
Sbjct: 78 CGETALRCPGHFGHIKFVEPVFHMGYLIYLKHILSCICIRCNKLLVYKNEKEIAALIKNK 137
Query: 130 INPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDP 189
+ ++ K V H + + + I+ + +I +L K TD
Sbjct: 138 QGKQRFAEIRSICKKVTHCQKENYGCGTPAHKISIDKRNGNIFLLA------EPVKRTD- 190
Query: 190 IVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRP 249
++ E E+ K ++ +P ++ + + DED ++G + SRP
Sbjct: 191 -------EYDETGETRKRPQQIL--------TPQLCYDILKSVSDEDCIIMGFDPAKSRP 235
Query: 250 EDLILTRLPVPPLCIRPSVVSDIKAG-TNEDDLTMKQSEILLINDVIARHLASAG--KCE 306
ED+I+ PVPP+ +RPS+ ++I + T +DDLT K +I+ N+ + K
Sbjct: 236 EDMIILNFPVPPVQVRPSIRAEILSSPTMDDDLTHKLIDIIKSNENLKNTKGDGSLIKYT 295
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQP-KKPGRGLVQRLKGKQGRFRGNLSGKRVDF 365
I +D+ LQLH A + ++M+G+ + Q KK + + +RL+GK+GR RGNL GKRVD
Sbjct: 296 SINDDFMLLQLHVATFFANDMAGLARSQQKNKKVTKSMSERLRGKEGRIRGNLMGKRVDM 355
Query: 366 SSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQ 425
S+RTVI+ DPN+ + EVGVP+ +AK LT+ E V N+++L +LV NG V+PGAN+V +
Sbjct: 356 SARTVITSDPNIALNEVGVPLIIAKNLTFDEIVTEHNIEYLTQLVKNGKRVYPGANFVIK 415
Query: 426 RGLKTKK-------YLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCH 478
+ + +LKY ++ LK GD+V+R L+DGD+V+FNRQPSLHKLS+M H
Sbjct: 416 HVIDAEGNESGHIYHLKYVDKPI---SLKPGDIVKRQLIDGDIVIFNRQPSLHKLSMMGH 472
Query: 479 RAKVQPQR---TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVI 535
+ V P TFR N V PYNADFDGDEMN+H+PQ+ + E L++ +
Sbjct: 473 KCHVIPDNNLLTFRVNVSVTDPYNADFDGDEMNLHVPQSIQTATEILLIANASR------ 526
Query: 536 IRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDA 595
V+P + I A QD + G Y+ T+ D +A +L
Sbjct: 527 ----------RFVSPATSNIAIKAKQDTLMGSYVQTEPDMEIDWRDAMS----ILMSTSV 572
Query: 596 TMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYV 655
+ D+P + +GK ++S I+ +G N T K+ ++ +
Sbjct: 573 KLDNDIPKYQNV------SGKFLYSQII-------------PEGLNITKRKN--DKEFQL 611
Query: 656 IIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSF 715
I+N EL G++ KS + SSI + +G + + RM ++M G++
Sbjct: 612 KIKNGELTDGTLGKSEI-----SSILQRIWFQYGSKETQEFIDDAQRMILQFLMRYGYTV 666
Query: 716 GIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSS 775
I D G+K+ + L+E+ + +I E + P ++ E + L S
Sbjct: 667 SIKDTVIGEKVNQYIYDLIETKRKETLAFITEYDN-----DPYVMTKDAFEIKLQENLKS 721
Query: 776 IRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSL 835
+++ R + I SGS G +N Q+ C+GQ + GKR+ F R+L
Sbjct: 722 VQDEIKNTVMRNFDKNSGIFIAISSGSSGEPMNAGQIAGCIGQVIVEGKRIQIRFNGRTL 781
Query: 836 PHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKS 895
P F + +RGF NSF GL P EFFF M GREG+++TA+KTA+TGY+QR+LVK
Sbjct: 782 PMFPKFDDSAFSRGFCRNSFIEGLGPFEFFFQVMAGREGIINTAIKTADTGYIQRKLVKM 841
Query: 896 LEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
LED+ +YD TVRNA G+++ YG +G++
Sbjct: 842 LEDIKQEYDGTVRNANGKLISCVYGDNGIN 871
Score = 64.9 bits (151), Expect = 1e-08
Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 7/151 (4%)
Query: 1038 IEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIIT 1097
+E G VG +AAQSIGEP TQ LK+FH +G ++ G+ RVKE++ S+NI TPI
Sbjct: 1058 VEGGEMVGFVAAQSIGEPVTQTNLKSFHKSGTGK-TVSGGLVRVKELLGISKNIKTPITE 1116
Query: 1098 AELMQPY--DQEFARRVKGRICTSKLK--VKPAEVTAVSAWAIKVTGEPSKSCGWLNMSL 1153
L + Y D+ A R+ + + L+ V+ A+V G K G N+
Sbjct: 1117 IILEEKYKNDKITASRIASYLKYTTLRDVVEKADV-IYDPEPFSKDGLMKKD-GVDNIFD 1174
Query: 1154 QQLGRQLPAVVVKGLPQVSRAVIACDDSSEK 1184
Q+ G+ +K LP V R +++ + E+
Sbjct: 1175 QEQGKTGCQTDIKNLPWVLRIMLSKEKMIER 1205
>UniRef50_A3AV59 Cluster: DNA-directed RNA polymerase; n=1; Oryza
sativa (japonica cultivar-group)|Rep: DNA-directed RNA
polymerase - Oryza sativa subsp. japonica (Rice)
Length = 1257
Score = 442 bits (1089), Expect = e-122
Identities = 238/524 (45%), Positives = 329/524 (62%), Gaps = 27/524 (5%)
Query: 3 KEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGT 62
KE + E R+I + F++ S + ++QSA ++V ++ + + P P+G+LD RMG
Sbjct: 12 KEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIY--NHEMKPVPNGLLDTRMGA 69
Query: 63 NQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLK 122
K C TC AEC GHFGY++L LPVF+VG+F I+ +L+ ICK C++V+L E +
Sbjct: 70 ANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLLMEKDR 129
Query: 123 KSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYR 182
+ +K NP+ L K A++ K F C S G+ KK G++ I+H+
Sbjct: 130 LEFLKKMRNPKADPLQKS---AIMKKNISHF--CVSLVGSTGVAKKGRAGLI-ILHD--- 180
Query: 183 AKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGM 242
K D ++ L D K+ ++A V+ + P VL+LF+R+ DED LL +
Sbjct: 181 CSKTLDGSTEE-LRDALSHKKEKLSISA------VRMLDPAIVLSLFKRMTDEDCELLNL 233
Query: 243 NVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASA 302
RPE LI+T + VPP+ IRPSV +NED +T+ I N ++ +L +
Sbjct: 234 G---DRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTG 290
Query: 303 GKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKR 362
G+ + W +LQL YINS+ +P + RGLVQRLKGK GRFRGNLSGKR
Sbjct: 291 GQFMKCFDCWQHLQLQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKR 345
Query: 363 VDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANY 422
+++ RTVISPDPNL+I EV +P+ +A++LTYPERV N++ LR+ + NGP HPGAN+
Sbjct: 346 TEYTGRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANF 405
Query: 423 VQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV 482
+ Q TK +LKY +R A++LK G VVERHL DGD+VLFNRQPSLH++SIM HRA++
Sbjct: 406 IIQPD-GTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARI 464
Query: 483 QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMG 526
P RT RFNE VC PYNADFDGDEMN+H+PQTEEAR EAL+LMG
Sbjct: 465 MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMG 508
Score = 394 bits (969), Expect = e-107
Identities = 244/595 (41%), Positives = 330/595 (55%), Gaps = 34/595 (5%)
Query: 606 IIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKD-------LCVQDSYVIIR 658
++ P +LWTGKQ+FS+++RPN +V NL K K Y K +C D +V R
Sbjct: 506 LMGPIELWTGKQLFSVLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFR 565
Query: 659 NSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGII 718
NSEL+ G + K+TLG+G K +F L+RD+ A M RLA+ ++ ++ N GFS G+
Sbjct: 566 NSELLSGQVGKATLGNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVD 625
Query: 719 DVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRE 778
DV PG+ L + K ++ GY C I KG L+ QPGC +TLE + L+ IRE
Sbjct: 626 DVQPGEHLNQEKKMKIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIRE 685
Query: 779 LAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHF 838
A K C LH N+PLIM+Q GSKGS INISQM+ACVGQQ++ G+R PNGF DR+LPHF
Sbjct: 686 EAGKVCMNTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHF 745
Query: 839 ERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLED 898
+SK PAA+GFV NSFYTGLT TEFFFHTMGGREGLVDTAVKTAETGY+ RRL+K LED
Sbjct: 746 PINSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLED 805
Query: 899 LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKD-RPVDLARVLADVRAKCQDKNAEPL 957
L + YD TVRNA+G +VQF YG DG+DP MEGKD +P++L ++ V A C + L
Sbjct: 806 LSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTL 865
Query: 958 DGDGIVLAAEETLALDDFKTS---TDEFKNELLSFLKATAGRVRALRARYAGCGRAALQL 1014
I+ + L+ D + +++FK L FL+ R++ L++ R AL L
Sbjct: 866 SPGEILQILNDKLSEHDASSDDGCSEKFKQLLTYFLE---DRIKLLKST-----RRALLL 917
Query: 1015 ERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNI 1074
+ + + G+ AA+ I P +T + V S I
Sbjct: 918 DEDHVGERHSSFEESIAANISGISVKQLQEIINAAKKISTP--IITAELLSEKDVLSARI 975
Query: 1075 TQG------VPRVKEIINASRNISTPIITAEL-MQPYDQEF----ARRVKGRICT-SKLK 1122
+G + V E I S P + +L MQ + A V+ I K+K
Sbjct: 976 VKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDMQRIEALHMGISADSVQLSILNHPKIK 1035
Query: 1123 VKPAEVTAVSAWAIKVTGEPSKSCGWLNMSLQQLGRQLPAVVVKGLPQVSRAVIA 1177
+K V + +++ L L L LP V+VKG+P V RAVI+
Sbjct: 1036 LKSEHVRVIDKSKLRIYPAGIDKSKLL-YELHHLKSMLPKVIVKGIPTVERAVIS 1089
>UniRef50_UPI00006CF1E9 Cluster: RNA polymerase Rpb1, domain 2
family protein; n=1; Tetrahymena thermophila SB210|Rep:
RNA polymerase Rpb1, domain 2 family protein -
Tetrahymena thermophila SB210
Length = 1759
Score = 439 bits (1082), Expect = e-121
Identities = 314/902 (34%), Positives = 461/902 (51%), Gaps = 84/902 (9%)
Query: 57 DRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVM 116
D+R+GT KDA C+TC EC GHFGYI L P++H+ + + IL +C +C V
Sbjct: 55 DKRLGTTSKDA-CKTCNQK-NECPGHFGYINLRRPIYHINFINTVKQILLCVCHKCGAVR 112
Query: 117 LP-----ESLKKSYRRKFINPEMSYLLKKNL---KAVVHKKAKTFSKCPSCEAINGMVKK 168
P ES K + + +F E YL N+ K +++ K K C+ N K
Sbjct: 113 EPPIKRNESGKPASKTEFAKLE-KYLEVMNISQPKRRLNELYKILGKQSKCQ--ND--KC 167
Query: 169 SSIGILKIVHEKYRAKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNL 228
+S +K+ K+ K + K +++ + E E+ I K++ +
Sbjct: 168 NSYLFVKVSVVKFLNLKVAEKQSDKDAIEYDLSAEQALEILKKIRYADSKKLLAYKG--- 224
Query: 229 FRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEI 288
+R D+D +P +LILT+L VPP +RPS+ T +D+LT E+
Sbjct: 225 -QRKHDDDF---------LQPTNLILTKLLVPPPQVRPSIEMSSNM-TCQDELTKCYEEV 273
Query: 289 LLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLK 348
L +N A+ ++ +L+++ +Q A ++++ + K + QRLK
Sbjct: 274 LKLN---AQIKDNSDNRKLVEQ----IQSVVARMMDNDKPRLEALKIKSKVVKSFSQRLK 326
Query: 349 GKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRR 408
GK+GRFR NL GKRVDFS+R+VISPD NL + E+GVP +A LT PE V N+ +R
Sbjct: 327 GKEGRFRQNLMGKRVDFSARSVISPDANLWLDELGVPRSIADSLTVPEIVNQQNINRIRE 386
Query: 409 LVCNGPDVH-PGANYVQQRGLKTKKYLKYGNRE-------------KIAQELKCGDVVER 454
L G N +Q + G+R+ ++K G ++ER
Sbjct: 387 LWKQGKIKSIMKPNREKQIYEAYDAIICSGDRQADDNFDMHVNDDYSYCSQIKIGVIIER 446
Query: 455 HLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQT 514
L +GD VLFNRQPSLHK+S+M HR ++ P TFR N V TPYNADFDGDEMNMH+PQ+
Sbjct: 447 ALQNGDYVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSVTTPYNADFDGDEMNMHVPQS 506
Query: 515 EEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRD 574
E R E + I V + +VTP+ + ++ QD + G + T RD
Sbjct: 507 YETRVE-----------LGYICHVPRQ-----IVTPKANKPVMGLVQDSLLGVAMFTLRD 550
Query: 575 TFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKAN 634
F T+ + L + D+P PAI+KP LWTGKQI SL++ E
Sbjct: 551 KFLTREQVMNLVMWI-----DNWEGDLPMPAILKPEPLWTGKQIMSLVIP-----EQMTM 600
Query: 635 LETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAV 694
KG +K QD + I EL+ G M+K+ +G G + I L D G E
Sbjct: 601 TRFKGDK-EDDKWFHKQDESIYIYKGELIQGYMNKAIVGDGPGGLVHLIWL-DIGHEETK 658
Query: 695 RGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQ 754
M R R+ + +++ G + D+ P +K E K+ + + K D L+ +
Sbjct: 659 NFMTRCQRVVNNWLIMFGHTISCADIVPSEKCSEEIEKIRKKAFEKYDKIELDFQDAAYI 718
Query: 755 CQ-----PGCTMEETLEAVMLSELSSIRELAAKACFRELH-PTNAPLIMAQSGSKGSNIN 808
Q G + ++ E + S L+ +R+ + K + N M SGSKG N
Sbjct: 719 DQNNMHKAGKKIFDSFEVQVNSILNELRQESEKKAEETIKFKYNQFNKMVWSGSKGKATN 778
Query: 809 ISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHT 868
++Q++ VGQQ + G R+ NGF R+LPHF + ARGFV N+FY GL P EFFFHT
Sbjct: 779 LAQVMGLVGQQNIEGARIRNGFSRRTLPHFCKDDNGIIARGFVVNNFYIGLKPYEFFFHT 838
Query: 869 MGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTY 928
MGGREGL DTAVKT+ TGY+QR+LVK+LED++++YD TVR++ G ++Q YG D L +
Sbjct: 839 MGGREGLSDTAVKTSRTGYIQRKLVKALEDVIVRYDGTVRDSQGMIIQTCYGEDSLAGEF 898
Query: 929 ME 930
+E
Sbjct: 899 IE 900
Score = 91.9 bits (218), Expect = 1e-16
Identities = 38/82 (46%), Positives = 60/82 (73%)
Query: 1016 RLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNIT 1075
+L++ + + K+++ + PG +GA++AQS+GEP TQMTL TFHFAGV+ N+T
Sbjct: 1087 KLSMEVFDKLTKEIFDKFKKAISHPGETIGAISAQSVGEPTTQMTLNTFHFAGVSDRNVT 1146
Query: 1076 QGVPRVKEIINASRNISTPIIT 1097
GVPR++EI++AS+N+ TP +T
Sbjct: 1147 LGVPRLQEILDASKNVKTPEMT 1168
>UniRef50_Q27900 Cluster: DNA-directed RNA polymerase; n=1; Euplotes
octocarinatus|Rep: DNA-directed RNA polymerase -
Euplotes octocarinatus
Length = 511
Score = 433 bits (1066), Expect = e-119
Identities = 228/487 (46%), Positives = 304/487 (62%), Gaps = 9/487 (1%)
Query: 20 FNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGLGLAEC 79
F + S I Q + +EVI L+ +D VP +G+LD R+G + K C+TC +C
Sbjct: 31 FELMSTQDIAQISELEVIECKLYDEDSY-VPTAYGLLDPRLGVSTKSDICQTCKSNYVDC 89
Query: 80 VGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEMSYLLK 139
GH+GYI+L LPV+H+G+F+ IITILQ ICK C++ +L E +K K I + +
Sbjct: 90 PGHYGYIKLELPVYHIGFFKHIITILQCICKGCSRFLLSEKERKIILDKKIKIT-DPMQR 148
Query: 140 KNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKKVLMDFH 199
++ + K C C NG VKK KI H+ Y KK D + + F
Sbjct: 149 DEIRRKMIDDCKKVINCEFCGYFNGTVKKEPGIACKITHDLYNIKKRKDDEMDNITQSFE 208
Query: 200 EAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPV 259
+ NK+V +N + ++++PL NL + I +DIPL MN K P D+I+ + V
Sbjct: 209 NILKINKDVEWGLNK-MQQDINPLIAYNLLKNIRKDDIPLFDMNGKNINPCDMIVYYIIV 267
Query: 260 PPLCIRPSV-VSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLH 318
PP+C+RPSV V++ K NEDDLT+K SEIL +N +I + + W+ LQ
Sbjct: 268 PPVCLRPSVAVTETKR--NEDDLTVKLSEILQLNMIIKSFIVGGPNYSKLATTWNQLQYT 325
Query: 319 AALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQ 378
A YIN++ G+PL M K R QRLKGKQGRFRGNLSGKRVDFS RTVISPDPN +
Sbjct: 326 LAQYINADTPGLPLNMVGNKAIRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNAE 385
Query: 379 IQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQ-QRGLKTKKYLKYG 437
I +V VPV +AKI T+P V N+++L++L+ NG +VHPGAN+VQ Q G+K K ++
Sbjct: 386 IGQVIVPVDMAKIFTFPVCVNSYNIEFLKKLIKNGSEVHPGANFVQFQNGIKMK--IREN 443
Query: 438 NREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTP 497
N I +ELK GD+VERHL+DGD VLFNRQPSLH+LSIMCH+AKV P +T RFNEC C P
Sbjct: 444 NSSVICKELKYGDIVERHLIDGDSVLFNRQPSLHRLSIMCHKAKVMPWKTLRFNECCCGP 503
Query: 498 YNADFDG 504
YNADFDG
Sbjct: 504 YNADFDG 510
>UniRef50_Q4A369 Cluster: DNA-directed RNA polymerase; n=1; Emiliania
huxleyi virus 86|Rep: DNA-directed RNA polymerase -
Emiliania huxleyi virus 86
Length = 1468
Score = 431 bits (1063), Expect = e-119
Identities = 347/1144 (30%), Positives = 556/1144 (48%), Gaps = 109/1144 (9%)
Query: 15 ISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGL 74
+ V F+V I+Q+A V L+ + +P +GV MG++ + C TC
Sbjct: 14 VKKVNFSVYGSDAIRQNAVTRVNEIALYTRG---IPTHNGVNSLAMGSSDRRIRCTTCNE 70
Query: 75 GLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEM 134
+ +C GH G I+L LPV+ Y + +L+++C C+++ L + K + K+ + +
Sbjct: 71 LMQKCPGHNGEIRLPLPVYQALYIDHTLKVLRSVCFFCSEICLTDEDKVALMEKYTDDKT 130
Query: 135 SYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGI-LKIVHEKYRAKKPTDPIVKK 193
+ + A+ A+T KCP C+ I + +GI + V + + +++ + ++K
Sbjct: 131 RF---NHTYAI----ARTRKKCPHCKGIRPSYVRGPLGIKTEWVDKSFESEEEQEYAMQK 183
Query: 194 VLMDF-HEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRP--E 250
+ ++ K+ A G K + P +++ +P I + SR +
Sbjct: 184 FTPALAYSILDNIKDTDATNFFG--KGLHPRDLIATSVLVPPPIIRPAISTAEGSRTKGQ 241
Query: 251 DLILTRLPVPP-------LCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAG 303
D I RL LC+ S + + + + Q + V+ R L
Sbjct: 242 DDITLRLQEINRRGNELRLCMNKQEDSGLPTFLCDANKVLPQKTDTITYTVVDRLLNVDA 301
Query: 304 KCELIQEDWDYLQLHAALYINSEM--SGIPLAM----QPKKPGRGLVQRLKGKQGRFRGN 357
+ + W+ LQ +N G+P +M + G+ ++ R++GK GRFR
Sbjct: 302 LTPDLIDRWNRLQADVFGLVNPAAIRGGMPASMANNNRNSANGKYIIDRIRGKNGRFRNC 361
Query: 358 LSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVH 417
L GKRV+FS R+VI+PD + + ++GVP +A ILT PE+V P+N+ LR + NGP
Sbjct: 362 LMGKRVNFSGRSVITPDSTIDVDQLGVPYELAMILTVPEKVTPSNIADLRTRILNGPTEL 421
Query: 418 PGANYV--QQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSI 475
GA V + L + K K NR I L+ G +VERHL +GD V+FNRQP+LH++
Sbjct: 422 IGAQSVINTEGDLISLKSCK--NRADIV--LRIGWIVERHLKNGDWVIFNRQPTLHRMGF 477
Query: 476 MCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVI 535
HR + +TFR N VC YNADFDGDEMN+H+ Q+ A +E LM +
Sbjct: 478 NGHRVVLTKGKTFRLNLSVCAVYNADFDGDEMNIHVCQSACATSEVSTLMAINR------ 531
Query: 536 IRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDA 595
N+++ +N + QD + G +L+T F T+++ + + +
Sbjct: 532 ----------NIISAQNNKPCFGIVQDSLVGAWLMTDPSVFLTRADMLRFRIYVKFANNG 581
Query: 596 TMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYV 655
T + PPPAI KP++LWTG Q+ S + P + ++ G KDL +Q
Sbjct: 582 TTML--PPPAISKPKELWTGSQLISFVF-PYTLMYQRGSIS--GITSYDTKDLLIQ---- 632
Query: 656 IIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWG-EEYAVRGMWRLARMASYYMMNRG-F 713
N +++ G + KSTLG+ T +I I+ + G + AV + + R+ + +++ + F
Sbjct: 633 ---NGQILFGRLSKSTLGA-TAGAISDIIHHEHGGPKKAVEFLSDVQRVVNQWLLYKNSF 688
Query: 714 SFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSEL 773
S G D + ++ N+++E C + K L + +++E E L
Sbjct: 689 SIGASDCVTNE---QSHNEVVE-----CIKSAVNNSKMILTSKVPKSLKEMAEGATTRIL 740
Query: 774 SSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDR 833
S + A P N+ + +GSKGS +NI+Q+ VGQQ + G R+ NG R
Sbjct: 741 SDVIMKTATIIKNNAPPDNSIITCVTAGSKGSPLNIAQVCGQVGQQIVGGARILNGTSGR 800
Query: 834 SLPHFER--HSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRR 891
+LP F+ H+ + A G+++NSF GL PTEFFF M GREGLVDTAVKTA +GY+QR
Sbjct: 801 TLPCFKHGEHATVNA-NGYIQNSFMLGLQPTEFFFSAMSGREGLVDTAVKTANSGYIQRC 859
Query: 892 LVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEG-KDRPV-------------- 936
LVK+ ED + YD T+RNA G VVQF+Y +D DP +E K P+
Sbjct: 860 LVKASEDNMCNYDGTIRNAQGMVVQFKY-ADNFDPCKVERIKVEPLLMTPEEIKRNAGPL 918
Query: 937 --DLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD---EFKNELLSFLK 991
D+ L + K ++ +PL D ++L + + + D EF E S L
Sbjct: 919 EYDVIMSLRENAQKVLSQSNKPL-MDVVLLPINISRMFESATWNNDVPHEFDEE--SLLT 975
Query: 992 ATAGRVRALRARYAGCGRAA-LQLE-RLTLTQLVRFLRV----CHHKYQ--RGVIEPGTA 1043
A + V + ++ C L ++ + + + L V C K++ V+ G A
Sbjct: 976 AVSEVVHEIVKKHPVCKYVVPLYIQWCMRIGNIPEHLNVKAFLCEVKHRCLSSVVAGGDA 1035
Query: 1044 VGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIITAELMQP 1103
VG AA SIGEP TQMTL +FH AG +T G+PR+KE++ S+ + TP T E
Sbjct: 1036 VGNTAALSIGEPSTQMTLNSFHTAGTGHAGVTMGIPRLKEVMGYSKQLRTPQTTLEFSDK 1095
Query: 1104 YDQE 1107
+E
Sbjct: 1096 TPEE 1099
>UniRef50_Q6C1S4 Cluster: DNA-directed RNA polymerase; n=1; Yarrowia
lipolytica|Rep: DNA-directed RNA polymerase - Yarrowia
lipolytica (Candida lipolytica)
Length = 1628
Score = 431 bits (1061), Expect = e-119
Identities = 302/813 (37%), Positives = 429/813 (52%), Gaps = 80/813 (9%)
Query: 339 PGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERV 398
P G+ Q L+ K+G FR N+ GKRV++++R+VISPDPN++ E+GVP A LTYPE V
Sbjct: 417 PVPGIKQTLEKKEGLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPV 476
Query: 399 FPANLQWLRRLVCNGPDVHPGANYVQQRGLK--TKKYLKYGNREKIAQELKCGDV----- 451
P N+ L R V NGPDV PGA +Q K + + + R A +L
Sbjct: 477 TPYNVAELSRAVINGPDVWPGAIQIQTEDGKMISLEGMTLEQRTATANQLLTPSANASGF 536
Query: 452 ----VERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFDGDE 506
V RH+ + DVVL NRQP+LHK S+M HR +V P ++T R + YNADFDGDE
Sbjct: 537 TNKKVFRHIRNNDVVLMNRQPTLHKASMMGHRVRVLPKEKTLRLHYANTGAYNADFDGDE 596
Query: 507 MNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITG 566
MNMH PQ E ARAEAL+L NT S +TP +G+ L QD I+
Sbjct: 597 MNMHFPQNENARAEALLLA---NT-------------DSQYLTPTSGKPLRGLIQDHISA 640
Query: 567 GYLITQRDTFFTKSEAQQLA-ACLLAGPDATM---RIDMPPPAIIKPRKLWTGKQIFSLI 622
G L+T +DTFFT+ E QQL CL T RI PPA+IKP LWTGKQ+ + +
Sbjct: 641 GVLLTSKDTFFTRQEYQQLIYGCLRPEDGHTADVGRIHTVPPAVIKPVPLWTGKQVITTV 700
Query: 623 MR---PNRRCEVKANLETKGKN-YTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKS 678
++ P R + N + K KN Y G ++ VI +N ELVCG +DKS G+
Sbjct: 701 LKNITPIGRPGLNLNAKNKVKNEYWGEGST---ENSVIFQNGELVCGILDKSQYGAADYG 757
Query: 679 SIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGY 738
+ + + +G A + + L R+ + Y+MN G + G+ D+ + + LE
Sbjct: 758 LV-HSIHEIYGAHIAGKLLSVLGRLFTRYVMNIGLTCGMDDLWLTAEGNNWRTTTLEGAK 816
Query: 739 S---KCDGYILEMEKGTLQCQPGCT--MEETL---------EAVMLSELSSIRELAAKAC 784
K + + + T P +EE L +A+ S+++++ C
Sbjct: 817 DVGVKAAAEVTNLPEDTDPEDPELLKRLEEILRDDNKLGILDAISQSKVNAVTTSVVSQC 876
Query: 785 F----RELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFER 840
+ P NA MA SG+KGSN+N+SQ++ +GQQAL G+RVP ++LP F+
Sbjct: 877 IPNGTMKRFPQNAMQRMALSGAKGSNVNVSQIMCGLGQQALEGRRVPVMVSGKTLPAFKP 936
Query: 841 HSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLV 900
A GFV + F++G+ P E++FH M GREGL+DTAVKT+ +GYLQR L+K LE +
Sbjct: 937 FETDAIAGGFVASRFFSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKQLEGVH 996
Query: 901 LQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVD--LARVLADVRAKCQDKNAEPLD 958
YD TVR++ G ++QF YG D +D E + D + A V N + LD
Sbjct: 997 STYDNTVRDSDGALIQFMYGGDSVD-VIKESHLQQFDFCVENFQAMVHKHQPGGNVDNLD 1055
Query: 959 GDGIVLAAEETLALDDFKTSTDEFKNELLSFLKAT--AGRV-----RALRARYAG----- 1006
D + A++ TS E +S G V +L A A
Sbjct: 1056 TDTAIEYAKKAKKKAKKATSDAELPEPTISLYNPAKYLGSVSEEFSNSLEAYIASRPDVF 1115
Query: 1007 ----CGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLK 1062
G+ + ++ +T+ +F + KY + + PG A+G +A+QSIGEP TQMTL
Sbjct: 1116 PPKKSGKKSTYADQ-GVTE-KKFRSLMQLKYMQSTVNPGEALGIIASQSIGEPSTQMTLN 1173
Query: 1063 TFHFAGVASMNITQGVPRVKEII-NASRNISTP 1094
TFHFAG + N+T G+PR++EII AS++I TP
Sbjct: 1174 TFHFAGHGAANVTLGIPRMREIIMTASKSIMTP 1206
Score = 58.0 bits (134), Expect = 1e-06
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
VG +I+ V F + SP I Q + ++ F D P G+ D ++G ++ NC
Sbjct: 9 VGAEITRVDFGLYSPEEILQLSVTQITNPTTF--DALGNPISGGLYDPKLGAFLRN-NCA 65
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKEC 112
TC L C GH G+I+L +PV++ +F + +L+ C+ C
Sbjct: 66 TCNLDNRFCQGHPGHIELPMPVYNPLFFTQLWVLLRAACRFC 107
>UniRef50_P15398 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=2; Fungi/Metazoa group|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 1689
Score = 411 bits (1012), Expect = e-113
Identities = 279/811 (34%), Positives = 426/811 (52%), Gaps = 74/811 (9%)
Query: 342 GLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPA 401
G+ Q L+ K+G FR ++ GKRV++++R+VISPDPN++ E+GVP A LTYPE V
Sbjct: 463 GIKQILEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLY 522
Query: 402 NLQWLRRLVCNGPDVHPGANYVQQRG--LKTKKYLKYGNREKIAQEL------------- 446
N +R V NGP PGA+++Q L + L R +A +L
Sbjct: 523 NFNEMRNAVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYS 582
Query: 447 -----KCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNA 500
V RH+ +GD+++ NRQP+LHK S+M H+A++ P ++T R + C YNA
Sbjct: 583 YSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNA 642
Query: 501 DFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAAT 560
DFDGDEMNMH PQ+ AR+EA + NT S + P +G+ L
Sbjct: 643 DFDGDEMNMHFPQSTNARSEAQFIA---NT-------------DSQYLVPTSGDPLRGLI 686
Query: 561 QDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATM--RIDMPPPAIIKPRKLWTGKQI 618
QD + G +T +DTF+T+ E QQL L + M RI PPAI +P WTGKQI
Sbjct: 687 QDHVVMGVWLTCKDTFYTRDEYQQLLFQALKPDETGMYGRIKTLPPAIQRPGIYWTGKQI 746
Query: 619 FSLIM---RPNRR--CEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLG 673
S ++ +P+ R +K+ + GK ++ + + + V+ + EL+CG +DKS+ G
Sbjct: 747 ISSVLLNLKPSDRPGLNLKSKAKVPGKYWSPDSE----EGSVLFDDGELLCGILDKSSFG 802
Query: 674 SGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKL 733
+ + + + +G + A R + L+R+ + Y RGF+ + D+ ++ + +L
Sbjct: 803 ASA-FGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQL 861
Query: 734 LESGYS------------KCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAA 781
LE+G S D I + + + L+A M +++ +
Sbjct: 862 LENGKSFGLEAASEYVGLSTDSPIALLNANLEEVYRDDEKLQGLDAAMKGKMNGLTSSII 921
Query: 782 KACFRE----LHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPH 837
C + P N M SG+KGSN+N+SQ+ +GQQ L G+RVP +SLP
Sbjct: 922 NKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPS 981
Query: 838 FERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLE 897
F + + GF+ + F TG+ P E++FH M GREGL+DTAVKT+ +GYLQR L+K LE
Sbjct: 982 FVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLE 1041
Query: 898 DLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNA-EP 956
L +QYD TVR++ G +VQF YG D LD T + + A+ + K + K+
Sbjct: 1042 GLCVQYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLTQFEFSAKNYKSLIQKYKVKSVLSA 1101
Query: 957 LDGDGIVLAAEETLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYAGCGR----AAL 1012
+D + A++ L +K K +L + + + + Y A+
Sbjct: 1102 VDSETASSYAKKALK-KPYKYDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKLIASK 1160
Query: 1013 QLERL--TLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVA 1070
+ +L +L +F + +YQ+ +++PG +VG LA+QSIGEP TQMTL TFHFAG
Sbjct: 1161 KESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAGFG 1220
Query: 1071 SMNITQGVPRVKEII-NASRNISTPIITAEL 1100
+ N+T G+PR++EII AS NI TP +T L
Sbjct: 1221 AKNVTLGIPRLREIIMTASANIQTPTMTLRL 1251
Score = 55.2 bits (127), Expect = 1e-05
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
V +I V F + +++ + +++ N L D P G+ D +G K++ C
Sbjct: 7 VSSEIKSVKFGIYDVDDVEKISVKQIV--NPVLLDNLNHPTNGGLYDLALGPYLKNSVCA 64
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKEC 112
TC L C GHFG+I L +P +H +F + +L++ C C
Sbjct: 65 TCHLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYC 106
>UniRef50_P25202 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=2; Giardia intestinalis|Rep: DNA-directed RNA
polymerase III subunit RPC1 - Giardia lamblia (Giardia
intestinalis)
Length = 1741
Score = 409 bits (1006), Expect = e-112
Identities = 232/519 (44%), Positives = 318/519 (61%), Gaps = 16/519 (3%)
Query: 604 PAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKD---LCVQDSYVIIRNS 660
P I+ PR+L++GKQ+ S++M+ N V NLE K Y + D L V D Y+II+NS
Sbjct: 840 PCIVYPRQLYSGKQVLSVLMKGNDFDSVNINLEHGDKTYKKDSDRRALSVNDDYIIIQNS 899
Query: 661 ELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDV 720
E + G + K+ L S +K+ IFY L++++G A R M R A++A+ ++MN GF+ GI DV
Sbjct: 900 EHLVGRLTKTFLAS-SKNCIFYFLVQNYGPVSAARIMLRFAKVAARFLMNYGFTIGIDDV 958
Query: 721 TPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELA 780
P ++++ K +++ GY K I + E G L+ PG T++ETLEA + LS++RE
Sbjct: 959 MPSQRVLGKKEVIVQEGYEKAQEKIRDYESGKLEAIPGSTVQETLEATLNQILSNVRESC 1018
Query: 781 AKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFER 840
A+ +ELH TN PLIM+ GSKGS INI+QMI +GQQ+ G R P+ F RS P+F
Sbjct: 1019 AQIALKELHFTNKPLIMSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFYTRSTPYFYH 1078
Query: 841 HSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLV 900
+SK P A+GF+ NSFYTGL P EF H GR+G++D+A KTA+TGYLQRRLVK LEDL
Sbjct: 1079 YSKEPNAKGFILNSFYTGLLPFEFLAHARAGRDGVIDSACKTADTGYLQRRLVKCLEDLS 1138
Query: 901 LQYDMTVRNATGEVVQFRYGSDGLDPTYME-GKDRPVDLARVLADV----RAKCQDKNAE 955
+ YD TVRN+ VVQFR+G DG DP +E G + DL +L + R++ + A
Sbjct: 1139 VSYDFTVRNSKKSVVQFRFGHDGFDPIKLEVGTGQCFDLDTLLRHIILLNRSQDLAEGAF 1198
Query: 956 PLDGDGIVLAAE-ETLALDDF---KTSTDEFKNELLSFLKATAGRVRA---LRARYAGCG 1008
P+ D AE + L DF + E N F ++ ++ + A
Sbjct: 1199 PVLLDRYKAEAELDVLLNKDFYGQEACLIERSNVTSYFQQSILPKLTTNTHIATTVAPAL 1258
Query: 1009 RAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAG 1068
A+ LT + FLR KY R +EPG+ GA+AAQS+GEP TQMTLK+FH AG
Sbjct: 1259 AASFLQTTLTKKDIDDFLRQVRRKYIRLNLEPGSPCGAVAAQSVGEPSTQMTLKSFHHAG 1318
Query: 1069 VASMNITQGVPRVKEIINASRNISTPIITAELMQPYDQE 1107
+ASMNITQGVPR+KEI++ ISTPI T EL D+E
Sbjct: 1319 LASMNITQGVPRLKEIVDGVVKISTPITTVELHVDVDKE 1357
Score = 159 bits (386), Expect = 4e-37
Identities = 88/184 (47%), Positives = 117/184 (63%), Gaps = 7/184 (3%)
Query: 246 LSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLAS-AGK 304
L+RP+D+ILT +PVPP C+RPSV S AGT ED+LT IL IND + + S A
Sbjct: 300 LTRPQDVILTHIPVPPSCLRPSVQSGSGAGTTEDNLTSHLVRILTINDKLKEAMVSGAVA 359
Query: 305 CELIQEDWDYLQLHAAL-YINSEMSGI-PLAMQPK---KPGRGLVQRLKGKQGRFRGNLS 359
+ WD L + +L YI G+ P+ + K G G++ RLKGK GRFR NLS
Sbjct: 360 TSKVYAKWDQLNMDVSLLYIGKIPGGVQPVKNKTDSGTKEGTGIIDRLKGKAGRFRSNLS 419
Query: 360 GKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG 419
GKRV+FS RTVISP+P L +Q+V +P +A+ LT+PE V N+++LR L+ NG +PG
Sbjct: 420 GKRVNFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNG-KTYPG 478
Query: 420 ANYV 423
AN V
Sbjct: 479 ANEV 482
Score = 140 bits (339), Expect = 2e-31
Identities = 71/143 (49%), Positives = 93/143 (65%), Gaps = 16/143 (11%)
Query: 439 REKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPY 498
R+ IA L+ D+V RHL+ D +LFNRQPSLH++SIM A + RTF FN VC+P+
Sbjct: 660 RQAIANSLRPNDIVYRHLLPNDTLLFNRQPSLHRMSIMQFNAVIHENRTFSFNPVVCSPF 719
Query: 499 NADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIA 558
NADFDGDEMN+ Q +EARAEA ILMGSH N+++PR+GE +I
Sbjct: 720 NADFDGDEMNIFYMQGQEARAEAGILMGSH----------------ENIISPRHGECMIG 763
Query: 559 ATQDFITGGYLITQRDTFFTKSE 581
TQDF+TG YL++ + F T+ E
Sbjct: 764 LTQDFLTGIYLLSGKGIFMTRQE 786
Score = 111 bits (268), Expect = 8e-23
Identities = 66/231 (28%), Positives = 121/231 (52%), Gaps = 17/231 (7%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
+++ + F+V S + + + + +++ T L+ + PA +GVLD+R+G + K C TC
Sbjct: 25 KRVEKLVFSVLSSNALMKLSEVQITTPILY--EHYPSPATNGVLDKRLGLSDKVGKCATC 82
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
G C+GHFG I L LPVFH G T+L +C C++V + E+ + Y K +N
Sbjct: 83 GKDTKMCIGHFGTISLALPVFHPGLINDARTMLSIVCPFCSRVKISEADRLKY--KVLNH 140
Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKS-SIGILKIVHEKYRAKKPTDPIV 191
+ S + K ++AK CP C A + + KKS +L+ +H + RA K ++
Sbjct: 141 KFSLAIVKE----AQEQAKKQVNCPFCHAPSTICKKSQGFRVLREMHYEERATKILADVI 196
Query: 192 KKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGM 242
K D + +E ++ + + + P++ L++ +++P+ D P LG+
Sbjct: 197 KH-QKDIEKIQELDQRLRNHV-------VDPIQALHILQKVPECDYPYLGI 239
>UniRef50_A2GJD3 Cluster: DNA-directed RNA polymerase; n=3;
Trichomonas vaginalis G3|Rep: DNA-directed RNA polymerase
- Trichomonas vaginalis G3
Length = 1004
Score = 406 bits (1000), Expect = e-111
Identities = 287/781 (36%), Positives = 412/781 (52%), Gaps = 74/781 (9%)
Query: 360 GKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG 419
GKRV+FS+R+VI+PDP + EVGVP AK L+YPERV N + L + + NG D +PG
Sbjct: 2 GKRVNFSARSVIAPDPYVATDEVGVPAVFAKTLSYPERVRDYNKERLSKAILNGADNYPG 61
Query: 420 AN-----YVQQRGLK-TKKYLKYGNREKIAQELKCGD---VVERHLVDGDVVLFNRQPSL 470
AN Y Q LK K+ L+ KI E GD V RH ++GD VL NRQP+L
Sbjct: 62 ANLIIDPYGQTFQLKGMKESLRQSYASKIFAE-SDGDFPWTVGRHAINGDYVLINRQPTL 120
Query: 471 HKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHN 529
H++SI+ R KV P QRT R + C +NADFDGDE+N+HLPQ E ARAEA IL
Sbjct: 121 HRVSILAMRVKVLPKQRTIRMHYSNCASFNADFDGDEINLHLPQNELARAEANIL----- 175
Query: 530 TAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACL 589
SL + + +TP G + QD + G L+T ++ F TK++ Q+L
Sbjct: 176 ---------SL--SSRHYITPTAGNPIRGLIQDHVDAGALLTMKNNFLTKTQYQELVFTA 224
Query: 590 LAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDL- 648
G + +++M PPAIIKP +LWTGKQ+ S I+ + NL + + T N +
Sbjct: 225 FGG-EINHKLEMLPPAIIKPTQLWTGKQVISTII-----INLTKNLSDQMMDLTSNSKIS 278
Query: 649 ------CVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLAR 702
C +++ V + L G +DK+ G+ +K + + + +G + A R + L R
Sbjct: 279 SILCYGCKEETTVRFVDGHLCTGIIDKAQFGA-SKFGMVHTIYELYGSDMASRFLTMLTR 337
Query: 703 MASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYS---KCDGYILEMEKGTLQCQ--- 756
+ +Y+M GFS GI D+ K + K+ E K +E E GT + Q
Sbjct: 338 LFTYFMQCHGFSCGIADMIVNHKGEGMREKMKEETDKVAIKTANDFVE-EFGTKETQYMN 396
Query: 757 ---------PGCTMEETLEAVMLSELSSIRELAAKACF----RELHPTNAPLIMAQSGSK 803
M+E + +++ L+ A F + P N +M SG+K
Sbjct: 397 LKDRLWDLIKDKDMKERYDHMIMGNLNKAASDTLNAIFPANITKPFPQNHLTMMTSSGAK 456
Query: 804 GSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTE 863
GS +N +Q+ +GQQ+L GKRVP ++LP FE P + GFV + F TGLTP E
Sbjct: 457 GSVVNATQISCLLGQQSLEGKRVPLMRSGKALPSFEFMDMSPQSGGFVSSRFLTGLTPEE 516
Query: 864 FFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDG 923
++FH MGGREGL DTAVKTA TGYLQR ++K++E L YD TVR+A +VQF YG DG
Sbjct: 517 YYFHAMGGREGLTDTAVKTANTGYLQRCIIKNIEGLRASYDGTVRDADDTIVQFLYGEDG 576
Query: 924 LDPTYMEGKDRPVDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFK 983
+DP M+ K +L ++ + Q N E + A++ +D K + +
Sbjct: 577 IDP--MQNK-YITKFDFMLKNIDSYSQKLNIEKVGEKANCDLAQK--VIDGEKVN----E 627
Query: 984 NELLSFLKATAGRVRALRARYAGC-GRAALQLERL-TLTQLVRFLR-VCHHKYQRGVIEP 1040
N L+ V ++ + + L++ T ++ LR V Y I+P
Sbjct: 628 NSLVQATYHPHRYVGSISQSFENALNKYCDDLKKKGTDEDTIKNLRAVAVFNYFSSQIQP 687
Query: 1041 GTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEI-INASRNISTPIITAE 1099
G VG +AA++IGEP TQMTL TFH AG N+T G+PR++EI I A+R +TP++
Sbjct: 688 GEVVGVIAAEAIGEPATQMTLNTFHLAGYGGTNVTLGIPRLREILIVATRTPATPMMFLS 747
Query: 1100 L 1100
L
Sbjct: 748 L 748
>UniRef50_Q00WA2 Cluster: DNA-directed RNA polymerase; n=2;
Ostreococcus|Rep: DNA-directed RNA polymerase -
Ostreococcus tauri
Length = 1789
Score = 399 bits (983), Expect = e-109
Identities = 279/832 (33%), Positives = 410/832 (49%), Gaps = 73/832 (8%)
Query: 323 INSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEV 382
IN + Q K G+ Q+L+ K+G FR N+ GKRV+F++R+VISPDP L E+
Sbjct: 537 INRLIDATKADTQEAKQAIGIRQQLEKKEGLFRMNMMGKRVNFAARSVISPDPYLGTSEI 596
Query: 383 GVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQ-QRG--LKTKKYLKYGNR 439
GVP AK LT+PE V P N+ +R LV NGPD+HPGAN ++ +RG + K+ R
Sbjct: 597 GVPPVFAKKLTFPELVTPHNVDLMRTLVENGPDIHPGANAIEDERGRVIHLDKFTAE-KR 655
Query: 440 EKIAQELKC--------------GDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP- 484
IA+ L V RHL +GDV+L NRQP+LHK I+ H A+V P
Sbjct: 656 AAIAKTLLATTASGSADGPARPLAKTVYRHLRNGDVMLVNRQPTLHKPGILAHTARVLPG 715
Query: 485 QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNK 544
QR R + C+ +NADFDGDE+N+H PQ RAEA +M
Sbjct: 716 QRVVRMHYSNCSTFNADFDGDEINLHFPQDHLGRAEAYEIM----------------HGD 759
Query: 545 SNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAG--PDATMRIDMP 602
P +G+ L QD I G +++ RD F +SE QL L + I++P
Sbjct: 760 RQFTVPTDGKPLRGLIQDHICSGLILSMRDRFLNRSEFTQLLYSALVDYCGETHGTIEVP 819
Query: 603 PPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGK---NYTGNKDLCVQDSYVIIRN 659
PPA++KP++LWTGKQ+ + R K + G +D + ++IR
Sbjct: 820 PPALLKPQRLWTGKQLIGAAITHITRGRPPMTFSAPCKIPGTFFGGEDS--GEDRLVIRR 877
Query: 660 SELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIID 719
+ G +DK+ G K + + + G A + R+ + ++ GF+ GI D
Sbjct: 878 NYFCTGVVDKNMFG---KYGLVHAVAELHGRSVAGALLSIFTRLFTTFLQKHGFTCGIDD 934
Query: 720 VTPGKKLIEAKNKLLESGYSKCDGYILEMEKGT------------LQCQPGCTMEETLEA 767
+ ++ + + LE C ++ + T + + L+
Sbjct: 935 LILTEQAEQDRLDELEKADEACKTATADVAEATGKSDEQVMRAVAAKLRENAAWGAQLDM 994
Query: 768 VMLSELSSIRELAAKACF----RELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNG 823
L+ + K C +++ N +M SG+KGS +N SQ+ A +GQQ L G
Sbjct: 995 KASGALNKVTSATVKKCLPLGTKKMFSKNCLSLMTISGAKGSLVNFSQIAAALGQQELEG 1054
Query: 824 KRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTA 883
+RVP ++LP FE + A G++ F++GL P E+FFH M GREGLVDTAVKTA
Sbjct: 1055 RRVPRMPSGKTLPCFEAYDVSARANGYIACRFFSGLDPPEYFFHCMAGREGLVDTAVKTA 1114
Query: 884 ETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLAR--V 941
+GYLQR LVK+LE L + YD TVR+ G +VQF+YG D +D T + LA
Sbjct: 1115 RSGYLQRCLVKNLESLRVHYDYTVRDCDGSIVQFQYGEDSVDVTRSGYLQKFEFLAENPE 1174
Query: 942 LADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFKNEL--------LSFLKAT 993
L + K L+ + + E + D + +T+ F N+L +
Sbjct: 1175 LIMLNNKSAISTLPTLNKKNVKVIDEISRKEDIPRFATENFGNQLGVLPEKFSVELKTFI 1234
Query: 994 AGRVRALRARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIG 1053
R + A G + A + +T F + + + V PG AVG +AAQS+G
Sbjct: 1235 DSRPKGYWADEKGDIKNASLAAKSGVT-AEEFATLMNMMFLSNVAPPGEAVGVVAAQSVG 1293
Query: 1054 EPGTQMTLKTFHFAGVASMNITQGVPRVKEII-NASRNISTPIITAELMQPY 1104
EP TQMTL TFHFAG N+T G+PR++E++ ASR + TP++ L + Y
Sbjct: 1294 EPSTQMTLNTFHFAGRGEANVTLGIPRLRELLMAASRKLLTPVMVLPLRKGY 1345
Score = 62.5 bits (145), Expect = 7e-08
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
V R+I+ +F+ +++ + + LF DG P G+ D +G C
Sbjct: 71 VQREIASASFSFYDADEVRKISVKRITNPTLF--DGLNNAVPDGLYDPALGPTDAKTTCV 128
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRK 128
TC C GHFG+I+L +PV++ F ++ +L+T C C + + ES + +R +
Sbjct: 129 TCKYPGGMCDGHFGHIELVVPVYNPLTFGTVVRLLKTTCFHCHRFRMHESRVRRFRER 186
>UniRef50_A4RCX8 Cluster: DNA-directed RNA polymerase; n=3;
Sordariomycetes|Rep: DNA-directed RNA polymerase -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 1719
Score = 396 bits (975), Expect = e-108
Identities = 293/872 (33%), Positives = 444/872 (50%), Gaps = 86/872 (9%)
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
++ E W LQ I++ S A K G+ Q+L+ K+G FR N+ GKRV+++
Sbjct: 437 ILHEAWTELQDCVNTLIDNTKSPTQGAAA-KALEEGIKQKLEKKEGLFRKNMMGKRVNYA 495
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
+R+VISPDPN++ E+GVP A+ LTYPE V N + +++ V NGPD PGA ++
Sbjct: 496 ARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVINGPDKWPGAAAIENE 555
Query: 427 G--LKTKKYLKYGNREKIAQEL------KCGDV----VERHLVDGDVVLFNRQPSLHKLS 474
+ + R +A +L G++ V RH+ +GDVVL NRQP+LHK S
Sbjct: 556 NGQIVNLRNKSQEERSSLANQLLAPTSNNSGNMRNKKVHRHISNGDVVLMNRQPTLHKPS 615
Query: 475 IMCHRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVT 533
IM HR +V P ++T R + C YNADFDGDEMNMH PQ E AR EAL
Sbjct: 616 IMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNEVARTEAL----------- 664
Query: 534 VIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLL--- 590
L ++ G+ L QD ++ + +DT+ +S +L L
Sbjct: 665 -----QLADTDHQYISGTQGKPLRGLIQDHLSVSVALCNKDTYLDRSAYHELVYNALRPE 719
Query: 591 AGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCV 650
+G RI++ PPAIIKP+ WTGKQ+ + ++R R + +L GK V
Sbjct: 720 SGHILRERIELVPPAIIKPKARWTGKQVITTVLRNIRPLDC-GDLWMTGKTQVPAHAWGV 778
Query: 651 --QDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYM 708
++ V+ R+ E + G +DK+ LG + + + + +G A + + + R+ + Y+
Sbjct: 779 HSEEGQVLFRDGEFISGILDKAQLGP-SSGGLVHAVHEVYGPAIAGKLLSAMGRLLTRYL 837
Query: 709 MNRGFSFGIID--VTP-----GKKLIEAKNKL----LESGYSKCDGY-----ILEMEKGT 752
R F+ G+ D +TP + +I+++ L + + Y D + E+ +
Sbjct: 838 NMRAFTCGMDDLKLTPEGEADRRNIIDSRAHLVGLQVAAKYVSLDQHQPANDDPELLRRL 897
Query: 753 LQCQPGCTMEETLEAVMLSELSSIRELAAKAC----FRELHPTNAPLIMAQSGSKGSNIN 808
+ T +E L+ VM S + + AC + P N M SG+KG +N
Sbjct: 898 EEVMRDDTKQEGLDGVMNSGSKHLSQDITTACLPKGLEKQFPKNQMQAMTISGAKGGQVN 957
Query: 809 ISQMIAC-VGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFH 867
+ +I+C +GQQ L G+RVP +SLP F+ A G++ N F TG+ P E++FH
Sbjct: 958 -ANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFETDIRAGGYIVNRFLTGIRPQEYYFH 1016
Query: 868 TMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPT 927
M GREGL+DTAVKT+ +GYLQR L+K +E L + YD +VR+A G +VQF YG DGLD T
Sbjct: 1017 HMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLEIGYDNSVRDADGSLVQFLYGEDGLDVT 1076
Query: 928 YMEG-KDRPVDLARVLADV-RAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFKNE 985
+ KD L + +++ + D PL + + L K + F E
Sbjct: 1077 KQKYLKDFTFILHNIKSELAQLNISDPRTLPLFELRDEILKQNKSNLKKAKANPRFFTGE 1136
Query: 986 LLS-------FLKATAGRVRALRARYAGCGRAALQLER--------LTLTQLVRFLR--- 1027
+S + AT+ + + Y AL E+ + +VR R
Sbjct: 1137 PVSSMLNPTRYAYATSEKFFDAMSSYVKENPDALIKEKDDKLRNSGPQSSSIVRLNRKAA 1196
Query: 1028 --VCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEII 1085
V KY R ++ PG AVG +A QS+GEP TQMTL TFH AG ++ N+T G+PR++E++
Sbjct: 1197 EKVLSAKYMRSLVHPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLRELL 1256
Query: 1086 -NASRNISTP---IITAELMQPYD-QEFARRV 1112
AS ISTP +I E M P D ++FA+ +
Sbjct: 1257 MTASSKISTPSMTLILNEEMSPADGEKFAKAI 1288
Score = 53.6 bits (123), Expect = 3e-05
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 50 PAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTIC 109
P P G+ D +G D+ C TC LG + C GH G+I+L +PV+H + ++ +L++ C
Sbjct: 44 PVPGGLYDPALGA-WGDSVCATCNLGPSACPGHPGHIELPVPVYHPVFMDQVLRLLRSQC 102
Query: 110 KEC 112
C
Sbjct: 103 AYC 105
>UniRef50_Q8SS15 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA
polymerase - Encephalitozoon cuniculi
Length = 1395
Score = 382 bits (941), Expect = e-104
Identities = 290/939 (30%), Positives = 477/939 (50%), Gaps = 80/939 (8%)
Query: 17 HVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGLGL 76
+++F S I++++ +EV+ F + G P G+ D RMG +NC+TC L
Sbjct: 9 NISFGSYSDEEIERNSCMEVVVPGCFDKFGH--PIRGGLYDLRMGPLDLSSNCKTCNLSF 66
Query: 77 AECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKF---INPE 133
C GHFG+I+L+ V + +F ++ +I++ C +C + + KF +N E
Sbjct: 67 LNCPGHFGHIKLSRIVLNPMFFDSLFSIVRCYCFQCKHFRITNYDRLILFCKFSLLLNGE 126
Query: 134 MS------YLL--KKNLKAVVHKKAKTFSKC---PSCEAINGMVKK---SSIGILKIVHE 179
+ Y++ ++ L +V ++ + K P E+ +V + ++ K V
Sbjct: 127 EAEDLDRLYMVSEEEELYKIVSERIENAKKNRSEPLMESHQEVVHRFLQNAGSRRKCVRC 186
Query: 180 KYRAKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPL 239
+ K KVL D + E +++ + + +SP V L + + L
Sbjct: 187 GHSNPKIVKGAKMKVLKDLRKGNEKDEDGKDL------EFLSPDAVRELMDDLFSNEADL 240
Query: 240 LGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHL 299
+ P ++ LPV P RP +V D K N L + ++IL ++ ++ + L
Sbjct: 241 IESIFFRRDPGMFFISNLPVIPNRFRPMIVLDGKKAENFQTLYL--NDILRVSVLVTKDL 298
Query: 300 ASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLS 359
+ W LQ AA+ + + I + + G Q L+ K G FR N+
Sbjct: 299 SY----------WPELQ--AAILSSFDNKNISKWSRTRMVPPGHKQILERKDGLFRRNIM 346
Query: 360 GKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG 419
GKRV+F++RTVISPDPNL+ +E+G+P+ A+ LT+PER N+ L++ V NGP +PG
Sbjct: 347 GKRVNFAARTVISPDPNLETREIGIPLVFAEALTFPERAASFNVDRLKKAVVNGP-TYPG 405
Query: 420 ANYVQQRGLKTK-KYLKYGNREKIAQELKCGD-VVERHLVDGDVVLFNRQPSLHKLSIMC 477
+ Y+Q + ++ R +A +L G VV RHLVDGDVVL NRQP+LH+ SIM
Sbjct: 406 SLYLQDGDVMLSLAHMPDEKRYALANQLLDGKKVVWRHLVDGDVVLMNRQPTLHRPSIMA 465
Query: 478 HRAKV-QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVII 536
H+ +V + +RT R + C YNADFDGDEMN+H PQ + AE+ ++
Sbjct: 466 HKCRVLRKERTLRMHYANCKSYNADFDGDEMNVHFPQNYASEAESRHIV----------- 514
Query: 537 RVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDAT 596
N SN + P NG+ + QD I ++T +D+FF++ + L L+
Sbjct: 515 -----MNDSNYLVPTNGKPIRGLVQDHIVIVTVLTMKDSFFSEEDYFTLVNAGLSD---- 565
Query: 597 MRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVI 656
RI + P I+KP +L++G+Q+ S I++ N V +ET + ++ +
Sbjct: 566 RRIVLDRPCIVKPARLYSGRQVISTILK-NLGLVVNIEIETNVPKNAWREHS--EERILR 622
Query: 657 IRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFG 716
IR +V G +DK++LG T S+ + G + + + + + Y++ GF+ G
Sbjct: 623 IREGNIVTGILDKNSLGP-TFKSLIHACGEIKGFATSNDLLTYIGWVGNRYLLMYGFTIG 681
Query: 717 IIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTM----EETLEAVMLSE 772
I D+ K EA K E K D E+++ ++ P + + L++VM +E
Sbjct: 682 IDDLLLDK---EADKKRREVVRVK-DQEAKELQRRYVEANPDFYLYADKKAYLDSVMRTE 737
Query: 773 LSSIRELAAKAC----FRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPN 828
++S+ K ++ P N ++ +GSKGS +N+SQ+ +GQQ L G+RVP
Sbjct: 738 MNSVTSEIVKVSVPSGLQKSFPENNMELIIATGSKGSIVNLSQISGALGQQELEGQRVPI 797
Query: 829 GFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYL 888
++LP F P++ G++ + F TG+ ++FFH M GREGL+DTA+KTA +GYL
Sbjct: 798 MASGKTLPCFAALDPSPSSGGYIYHRFLTGIDLPQYFFHCMAGREGLIDTAIKTANSGYL 857
Query: 889 QRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPT 927
QR L+K +E+ ++YDM+VR V+QF YG DGLD T
Sbjct: 858 QRCLIKHMEEAKVEYDMSVRIGK-RVIQFMYGEDGLDCT 895
Score = 90.2 bits (214), Expect = 3e-16
Identities = 64/156 (41%), Positives = 88/156 (56%), Gaps = 10/156 (6%)
Query: 982 FKNELLSFLKATAGRVRALRARYAGCGRAALQLE-RLTLTQLVRFLRVCHHKYQRGVIEP 1040
FK +L F K+ A V L RY + + L +L RFL +Y + +P
Sbjct: 906 FKRNVLLFGKS-ASIVSKLEDRYKDFLSLKFRKQIDLLDDELRRFLA---DRYICSLADP 961
Query: 1041 GTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEI-INASRNISTPIITAE 1099
G +VG +AAQS+GEP TQMTL TFH AGV + N+T GVPR++EI I AS++I TP+IT
Sbjct: 962 GESVGVIAAQSVGEPSTQMTLNTFHLAGVGAKNVTLGVPRLREILITASKSIRTPLITVP 1021
Query: 1100 LMQ--PYD-QEFARRVKGRICTSKLKVKPAEVTAVS 1132
+ + +D E RRV + C + V E+ VS
Sbjct: 1022 IKRRVSFDITECLRRVTLKDCVKRFGV-TEEIVMVS 1056
>UniRef50_Q7RWI3 Cluster: DNA-directed RNA polymerase; n=4;
Pezizomycotina|Rep: DNA-directed RNA polymerase -
Neurospora crassa
Length = 1674
Score = 378 bits (930), Expect = e-103
Identities = 269/815 (33%), Positives = 416/815 (51%), Gaps = 70/815 (8%)
Query: 337 KKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPE 396
K+ G+ Q+L+ K+G FR N+ GKRV+F++R+VISPDPN++ E+GVP A+ LTYPE
Sbjct: 475 KRNEDGIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETSEIGVPPVFARKLTYPE 534
Query: 397 RVFPANLQWLRRLVCNGPDVHPGANYVQQRG--LKTKKYLKYGNREKIAQELKC------ 448
V N L+ V NG + PGA+ ++ + + R+ +A +L
Sbjct: 535 PVTSHNYHDLKNAVQNGMEKWPGASAIEMENGQIINLRNKSSEERQALANQLLAPTNNNF 594
Query: 449 ----GDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFD 503
V RHL +GDVVL NRQP+LHK SIM HR +V P ++T R + C YNADFD
Sbjct: 595 SGVRNKKVHRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFD 654
Query: 504 GDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDF 563
GDEMNMH PQ E ARAEAL L ++ G+ L QD
Sbjct: 655 GDEMNMHFPQNEIARAEAL----------------QLADTDHQYISGTAGKPLRGLIQDH 698
Query: 564 ITGGYLITQRDTFFTKSEAQQLAACLL---AGPDATMRIDMPPPAIIKPRKLWTGKQIFS 620
++ ++ +DTFF ++ QL L +G +I++ PPAIIKP WTGKQ+ +
Sbjct: 699 LSVSVILCNKDTFFDRANYHQLIYAALRPESGHIMGDKIELLPPAIIKPVPRWTGKQVIT 758
Query: 621 LIMR---PNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTK 677
I++ P ++ N T+ K + D ++ V R+ E + G +DKS LG +
Sbjct: 759 TILKNIKPPNCGDLWMNGSTQVKAHQWG-DHAPEEGQVTFRDGEFITGILDKSQLGPSS- 816
Query: 678 SSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESG 737
+ + + +G AV M + G+ +V +E + E
Sbjct: 817 GGLIHSIHEVYGPSAAV--MTPKGEADRKEKIKAAAHIGL-EVAAKYVSLEEQKPTPE-- 871
Query: 738 YSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACF----RELHPTNA 793
D +L+ + ++ +E L+ +M + + K C ++ P N
Sbjct: 872 ----DPLLLQRLEEVMRNDK---KQENLDLLMNQRCAQLSSEITKTCLPAGLQKKFPKNQ 924
Query: 794 PLIMAQSGSKGSNINISQMIAC-VGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVE 852
M SG+KGS +N + +I+C +GQQ L G+RVP ++LP F+ A G++
Sbjct: 925 MQSMTTSGAKGSPVN-ANLISCNLGQQVLEGRRVPVMVSGKTLPSFKPFDTNARAGGYIV 983
Query: 853 NSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATG 912
F TG+ P E++FH M GREGL+DTAVKT+ +GYLQR L+K +E L + YD +VR++ G
Sbjct: 984 QRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVAYDTSVRDSDG 1043
Query: 913 EVVQFRYGSDGLD---PTYMEGKDRPV-DLARVLADVRAKCQDKNAEPLDGDGIVLAAEE 968
++QF +G DG+D Y+ + + +L LA + + A D ++ +
Sbjct: 1044 SIIQFLFGEDGIDISKQKYLNDFEFVLRNLKSELAHLHYSEEGTQALFEHKDEMIKRMKA 1103
Query: 969 TLALDDFKTSTDEFKNEL--LSFLKATAGRVRALRARYAGCGRAALQLERLTLTQ--LVR 1024
+ D + + ++++ + AT+ +Y + L E+ + +VR
Sbjct: 1104 AIKSRDTRNPLNPIESDVDPALYAFATSENFFEKMTKYVKENKDGLIKEKKGDSSGIIVR 1163
Query: 1025 --FLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVK 1082
++ KY R ++EPG AVG +A QS+GEP TQMTL TFH AG ++ N+T G+PR++
Sbjct: 1164 KNAEKILAAKYIRSLVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLR 1223
Query: 1083 EII-NASRNISTPIIT----AELMQPYDQEFARRV 1112
EI+ AS ISTP +T AEL + FA+ +
Sbjct: 1224 EILMTASSKISTPAMTLYPNAELSDTDCERFAKSI 1258
Score = 55.6 bits (128), Expect = 8e-06
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 50 PAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTIC 109
P P G+ D +G+ D+ C TC LG ++C GH G+I+L +PV+H + +L+ C
Sbjct: 44 PVPGGLYDPALGS-WGDSLCTTCNLGQSQCPGHPGHIELPVPVYHPVFMDQAYRLLRAQC 102
Query: 110 KECAKVMLP 118
C + LP
Sbjct: 103 VYCHRFRLP 111
>UniRef50_Q3LWE3 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1510
Score = 375 bits (923), Expect = e-102
Identities = 252/721 (34%), Positives = 389/721 (53%), Gaps = 48/721 (6%)
Query: 218 KEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTN 277
+++ P + ++ + I D +LG + K SRP LIL LP+PP+ IRP ++
Sbjct: 185 RKLFPEQAYSILKNISKFDCNILGFDFKNSRPNWLILYNLPIPPINIRPYSKKNLFI-KY 243
Query: 278 EDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK 337
EDDLT K +I+ ND + R S EL++ + L H Y ++ + + L+
Sbjct: 244 EDDLTYKLHDIIKANDRLQRSKNSRKSSELLENYRELLSYHIFTYFDNSSTKVKLSTHVS 303
Query: 338 -KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPE 396
KP + + QRLKGK GRFR NL GKRVDF+ RTVI+ D + ++E+G+P+ +AK LT PE
Sbjct: 304 GKPIKSISQRLKGKFGRFRRNLVGKRVDFTGRTVITGDSYIHLEELGIPMLIAKKLTLPE 363
Query: 397 RVFPANLQWLRRLV-CNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERH 455
V N+ L ++ G ++ ANY+ +G L+Y + I LK G ++ERH
Sbjct: 364 VVNKFNIDRLSYIIDSTGNELK--ANYII-KGYNKVIDLRYKSSNSIIL-LKYGFIIERH 419
Query: 456 LVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTE 515
+ GD+V+ NRQPSLHK+S+M HR K+ P+ TFR N V TPYNADFDGDEMN+H+PQ+E
Sbjct: 420 IQSGDIVILNRQPSLHKMSMMGHRVKIFPKLTFRLNLSVTTPYNADFDGDEMNIHIPQSE 479
Query: 516 EARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDT 575
R+E+ +M N N+++P+ + +I QD ++ Y ++ RD+
Sbjct: 480 LTRSESTFIMNVIN----------------NIMSPQANKPVIGLVQDTLSTCYTLSSRDS 523
Query: 576 FFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANL 635
F E L + P+IIKP K WTGKQ+ S + P+ + +
Sbjct: 524 FLNSLEKDYLKN--------NYKNFSTQPSIIKPLKKWTGKQLLSSFL-PHLTFLHRESR 574
Query: 636 ETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVR 695
+T + N DS + I++ +++ G +K T+G+ S I I L + ++ R
Sbjct: 575 KTFHFEDSNN----YNDSSMYIQDGKIMMGLFNKKTIGASYNSIIQNIWLE--YDHFSCR 628
Query: 696 GMWRLAR-MASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQ 754
L + A + + GF+ + DV KKL ++ Y ++E +K
Sbjct: 629 NFIDLCQTTARHTNIKNGFTVSLWDVFLEKKLFNIFYN-IKKFYIHNWIKLMETKKQIKM 687
Query: 755 CQPGCTMEETLEAVMLSELSSIRELAAKA--CFREL-HPTNAPL-IMAQSGSKGSNINIS 810
Q T+ ++ LS+ ++ + F L H N + IM SGSKGS IN+
Sbjct: 688 TQIKNFKFNTI--TKINNLSTTKKYFSSLINLFLNLTHNQNNNMNIMLNSGSKGSLINLI 745
Query: 811 QMIACVGQQALNGKRVPNGFEDRSLPH-FERHSKIPAARGFVENSFYTGLTPTEFFFHTM 869
Q++ +G+Q+ N F R H H I + GF+ ++F+ GL P E+F H +
Sbjct: 746 QIVGLLGKQSSIKINNMNHFHGRLFCHNIIGHIPIEST-GFILSNFFYGLNPHEYFCHAI 804
Query: 870 GGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYM 929
GREG++DT++KTAETGY+QR+ KS+E+L+ YD TVRN++ ++QF YG DGLDPT++
Sbjct: 805 SGREGIIDTSIKTAETGYIQRKFSKSMENLICYYDGTVRNSSQSIIQFLYGEDGLDPTFL 864
Query: 930 E 930
E
Sbjct: 865 E 865
Score = 83.4 bits (197), Expect = 3e-14
Identities = 37/78 (47%), Positives = 51/78 (65%)
Query: 1016 RLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNIT 1075
++ L QL + +KY + + PG VG + AQSIGEP TQMTL TFH+AG+A ++T
Sbjct: 1019 KINLFQLKWIFKQIENKYNKSLTTPGECVGVIGAQSIGEPTTQMTLNTFHYAGIAEKDVT 1078
Query: 1076 QGVPRVKEIINASRNIST 1093
GVPR E+INA++ T
Sbjct: 1079 TGVPRFNELINATKKPKT 1096
Score = 40.3 bits (90), Expect = 0.31
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 59 RMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTI 108
+MGT + + C +C G+FG+I+L LPVF+ Y I+ IL+++
Sbjct: 56 KMGTIENTSICPLDSNTGKDCPGYFGHIELFLPVFNCNYLGLILKILKSV 105
>UniRef50_Q553A1 Cluster: DNA-directed RNA polymerase; n=2;
Dictyostelium discoideum|Rep: DNA-directed RNA polymerase
- Dictyostelium discoideum AX4
Length = 1615
Score = 363 bits (894), Expect = 1e-98
Identities = 251/715 (35%), Positives = 360/715 (50%), Gaps = 58/715 (8%)
Query: 245 KLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHL-ASAG 303
K S + L + PV P RP + + +E ++ N +I + + A G
Sbjct: 329 KESNVDSLFMRVFPVTPARYRPP--NFVNGRRSEHPQNSHYKGMVKSNKMIRQSIDAGEG 386
Query: 304 KCELIQEDWDYLQLHAA-LYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKR 362
K + + LQ+H +Y NS+ + + G+ Q L+ K+G FR ++ GKR
Sbjct: 387 KAKFLVNSVCDLQMHVNNMYDNSKSNS-----NTNEVANGIKQILEKKEGLFRKHMMGKR 441
Query: 363 VDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANY 422
V++++RTVISPD +L+ E+GVP + AK LT+P+ V N L + V NGP+ +PGAN+
Sbjct: 442 VNYAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPGANF 501
Query: 423 VQQRGLKTKKYLKYGNREKIAQELKC-----------GDVVERHLVDGDVVLFNRQPSLH 471
++ K ++IA V RHL+ GD VL NRQP+LH
Sbjct: 502 IEDENGHLINLSKESQEKRIALSKTLLTSHPHAPRGVNKKVYRHLLSGDYVLANRQPTLH 561
Query: 472 KLSIMCHRAKV--QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHN 529
K IM HR KV + ++T R + C+ YNADFDGDEMN+H PQ+ A AE
Sbjct: 562 KPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAE--------- 612
Query: 530 TAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACL 589
IR N LV PRNG L QD I G L+T+RDT FTK++ Q +
Sbjct: 613 ------IREICANNYQYLV-PRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAILYAS 665
Query: 590 LAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYT---GNK 646
+ I PPP I+KP LW+GKQ+ S + NLE K T G K
Sbjct: 666 CWSVNTKHPIVTPPPCILKPVPLWSGKQLISAALNQLTIGRAPLNLEAPSKIPTKMWGTK 725
Query: 647 DLCV-QDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMAS 705
L + +DS+VIIR +E+V G +DK G+ + + + + + A + L RM +
Sbjct: 726 GLEITRDSHVIIRQNEMVAGILDKGHFGASSYGLV-HTCYELYDPDVAGSLLTLLGRMFT 784
Query: 706 YYMMNRGFSFGIIDVTPGKK----LIEAKNKLLESGY---------SKCDGYILE--MEK 750
Y+ +RGF+ G+ D+ K +E K E GY SK D K
Sbjct: 785 NYLQSRGFTCGVDDLLMKNKEEKFRVETLKKANEEGYTVAAKFADLSKYDEQKARDFFSK 844
Query: 751 GTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINIS 810
+ ++ L+ + S + + ++ P N +M SG+KGS +N S
Sbjct: 845 ALQSEREVARLDGLLKKGLNQYTSKVIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFS 904
Query: 811 QMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMG 870
Q+ +GQQ L GKRVP ++LP F+ + A GFV + F TG+ P ++FFH M
Sbjct: 905 QVSCLLGQQELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFFHCMA 964
Query: 871 GREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
GREGL+DTAVKT+ +GYLQR L+K LE L +QYD TVR + G V+QF YG D L+
Sbjct: 965 GREGLIDTAVKTSRSGYLQRCLIKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLE 1019
Score = 75.8 bits (178), Expect = 7e-12
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 1025 FLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEI 1084
F + + Y R ++ PG +VG L AQSIGEP TQMTL TFH AG N+T G+PR++E+
Sbjct: 1121 FRNLMYLYYSRSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVTLGIPRLREL 1180
Query: 1085 I-NASRNISTPIITAEL 1100
I A+ TP++ ++
Sbjct: 1181 IMTATTKPITPLMEFQI 1197
Score = 56.0 bits (129), Expect = 6e-06
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
+ +IS V+F + +++ + +++ F G P P G+ D +G C
Sbjct: 9 IKEEISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGG--PVPGGLHDPALGPTGPAERCA 66
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKEC 112
TC L EC GHFG+I+L +P ++ F+ I +L+ C C
Sbjct: 67 TCSLDFIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHC 108
>UniRef50_Q5TMU2 Cluster: DNA-directed RNA polymerase; n=1;
Anopheles gambiae str. PEST|Rep: DNA-directed RNA
polymerase - Anopheles gambiae str. PEST
Length = 785
Score = 361 bits (889), Expect = 5e-98
Identities = 220/588 (37%), Positives = 321/588 (54%), Gaps = 39/588 (6%)
Query: 343 LVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPAN 402
L Q ++ K G R ++ GKRV+ ++RTVI+PDPN+ ++E+G+P AK LTYP V P N
Sbjct: 1 LKQLIEKKAGLIRMHMMGKRVNHAARTVITPDPNIGVEEIGIPTRFAKKLTYPVPVTPWN 60
Query: 403 LQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGD----VVERHLVD 458
+ LR+ V NGPDV+PGAN ++ G KI+ GD +V RHL +
Sbjct: 61 VAELRQWVMNGPDVYPGANMIEDAN---------GRVSKISSTNSSGDDTIKIVHRHLQN 111
Query: 459 GDVVLFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEA 517
GD++L NRQP+LH+ SIM HRAK+ ++ FR + C YNADFDGDEMN HLPQ E A
Sbjct: 112 GDILLLNRQPTLHRPSIMAHRAKILGGEKIFRLHYSNCKSYNADFDGDEMNAHLPQNEVA 171
Query: 518 RAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFF 577
RAEA L+ AV + P++G L QD I + R FF
Sbjct: 172 RAEAYGLV-----AVPY-----------QYLVPKDGTPLGGLIQDHIVSAVKLFIRGKFF 215
Query: 578 TKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLET 637
+ + QQL L+ I++ PP+I+KP +LW+GKQI S I++ N + +
Sbjct: 216 NREDYQQLVFQALSNKKGN--IELLPPSILKPVRLWSGKQIISTIIK-NSTPKGMPYINL 272
Query: 638 KGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGM 697
G +L +S V IR EL+ G +DK+ G+ T + + + +G + +
Sbjct: 273 YGGTPLRENEL--SESEVFIRQGELLSGILDKNHFGA-TPYGLIHCMYELYGGVCSTALL 329
Query: 698 WRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQP 757
L+R+ +YY+ GF+ G+ D+ K +++++ + G+ E L+
Sbjct: 330 SSLSRLFTYYLQWEGFTLGVRDILVQSKADRKRSRIIRECRAVA-GH--EAATSALELPA 386
Query: 758 GCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVG 817
+ +E + + + + + A + P N +M QSG+KGS +N Q+ +G
Sbjct: 387 SVSRDELAQRMREAYAKNPKFRAILDRKYKTFPENNLQLMVQSGAKGSTVNTMQISCLLG 446
Query: 818 QQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVD 877
Q L GKR P RSLP F P + GF++ F TG+ P EFFFH M GREGL+D
Sbjct: 447 QIELEGKRPPLMISGRSLPSFADFDTSPKSGGFIDGRFMTGIQPQEFFFHCMAGREGLID 506
Query: 878 TAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
TAVKT+ +GYLQR LVK LE L + YDMTVR++ G V+Q+ +G DG+D
Sbjct: 507 TAVKTSRSGYLQRCLVKHLEGLSVHYDMTVRDSDGSVIQYMFGEDGMD 554
Score = 76.2 bits (179), Expect = 5e-12
Identities = 36/56 (64%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 1040 PGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-ASRNISTP 1094
PG VG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ A+ I TP
Sbjct: 723 PGEPVGVLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMCAAAEIKTP 778
>UniRef50_P91875 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=3; Sophophora|Rep: DNA-directed RNA polymerase I
subunit RPA1 - Drosophila melanogaster (Fruit fly)
Length = 1642
Score = 361 bits (887), Expect = 8e-98
Identities = 262/751 (34%), Positives = 396/751 (52%), Gaps = 83/751 (11%)
Query: 237 IPLLGM-NVKLSR----PEDLI-LTRLPVPPLCIRP-SVVSDIKAGTNEDDLTMKQSEIL 289
+P+LG+ N L++ P DL + LPV P RP ++V D+ G + D+ + E
Sbjct: 274 VPVLGLSNTDLTQGDRSPVDLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENN 333
Query: 290 LINDVIARHLASAGKCELIQEDWDYLQL------HAALY---INSEMSGIPLA----MQP 336
+ +V+ +++ G+ +L +E Q H LY + +MS L +
Sbjct: 334 HVLNVVLKYM-KGGQEKLTEEAKAAYQTLKGETAHEKLYTAWLALQMSVDVLLDVNMSRE 392
Query: 337 KKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPE 396
K G GL Q ++ K G R ++ GKRV++++RTVI+PDPN+ + E+G+P AK L+YP
Sbjct: 393 MKSGEGLKQIIEKKSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPV 452
Query: 397 RVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGN---REKIAQEL----KCG 449
V N+ LR++V NGPDVHPGANY+Q + T Y+ N RE +A+ L K G
Sbjct: 453 PVTEWNVTELRKMVMNGPDVHPGANYIQDKNGFT-TYIPADNASKRESLAKLLLSNPKDG 511
Query: 450 -DVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEM 507
+V RH+++GDV+L NRQPSLHK SIM H+A++ ++TFR + C YNADFDGDEM
Sbjct: 512 IKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEM 571
Query: 508 NMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGG 567
N H PQ+E ARAEA L+ N A SN + P++G L QD + G
Sbjct: 572 NAHYPQSEVARAEAYNLV---NVA-------------SNYLVPKDGTPLGGLIQDHVISG 615
Query: 568 YLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFS-----LI 622
++ R FF + + QQL L+ I + PP I+KP LW+GKQI S +I
Sbjct: 616 VKLSIRGRFFNREDYQQLVFQGLS--QLKKDIKLLPPTILKPAVLWSGKQILSTIIINII 673
Query: 623 MRPNRRCEVKANLETKGKNYTGNK---DLC--------VQDSYVIIRNSELVCGSMDKST 671
R + + + GKN+ ++ +C + +S V IRN EL+ G +DK
Sbjct: 674 PEGYERINLDSFAKIAGKNWNVSRPRPPICGTNPEGNDLSESQVQIRNGELLVGVLDKQQ 733
Query: 672 LGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKN 731
G+ T + + + +G + + + ++ ++++ GF+ G+ D+ +
Sbjct: 734 YGA-TTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRR 792
Query: 732 KLLESGYSKCDGYI---LEME-----KGTLQCQPGCTMEETLEAVML-----SELSSIRE 778
K++ + + + LE+E ++ ++++ V+L S L
Sbjct: 793 KIIRECRNVGNSAVAAALELEDEPPHDELVEKMEAAYVKDSKFRVLLDRKYKSLLDGYTN 852
Query: 779 LAAKACF-REL---HPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRS 834
C R L P+N +M SG+KGS +N Q+ +GQ L GKR P +S
Sbjct: 853 DINSTCLPRGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKS 912
Query: 835 LPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVK 894
LP F P + GF++ F TG+ P +FFFH M GREGL+DTAVKT+ +GYLQR L+K
Sbjct: 913 LPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIK 972
Query: 895 SLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
LE L + YD+TVR++ VVQF YG DGLD
Sbjct: 973 HLEGLSVHYDLTVRDSDNSVVQFLYGEDGLD 1003
Score = 80.2 bits (189), Expect = 3e-13
Identities = 40/80 (50%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 1035 RGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-ASRNIST 1093
+ + PG VG +AAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ AS NI T
Sbjct: 1169 KSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKT 1228
Query: 1094 PIITAELMQPYDQEFARRVK 1113
P + + +P Q A +++
Sbjct: 1229 PSMDIPI-KPGQQHQAEKLR 1247
Score = 51.2 bits (117), Expect = 2e-04
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 16 SHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDAN-CETCGL 74
S + F V + I++ + ++VIT F G +P G+ D RMG+ + + C TC L
Sbjct: 14 SDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIPG--GLYDIRMGSYGRCMDPCGTC-L 70
Query: 75 GLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPE 119
L +C GH G+I+L PV++ + + + +L C C K+ + +
Sbjct: 71 KLQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKD 115
>UniRef50_Q16K29 Cluster: DNA-directed RNA polymerase; n=1; Aedes
aegypti|Rep: DNA-directed RNA polymerase - Aedes aegypti
(Yellowfever mosquito)
Length = 1686
Score = 357 bits (878), Expect = 1e-96
Identities = 257/770 (33%), Positives = 388/770 (50%), Gaps = 83/770 (10%)
Query: 241 GMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLA 300
GM + L P+ IL + + +R +V K + + ++E+ + + A
Sbjct: 302 GMEI-LEHPQTAILRNILMANATLRAVLVMSKKDDAEGESASTLEAEMKKVYES-----A 355
Query: 301 SAGKC-ELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLS 359
G E + W LQ + + ++ M+ + K G GL Q ++ K+G R ++
Sbjct: 356 KGGSAYEKLYNAWVELQSYVDMSLDINMA----LDKSKARGFGLKQIIEKKEGLVRMHMM 411
Query: 360 GKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG 419
GKRV++++RTVI+PDPN+ + E+G+P+ AK LTYP V N+ LR++V NGPD +PG
Sbjct: 412 GKRVNYAARTVITPDPNIGVDEIGIPITFAKRLTYPVPVTSWNVAELRKMVLNGPDNYPG 471
Query: 420 ANYVQQRGLKTKKY--LKYGNREKIAQEL----KCGD----VVERHLVDGDVVLFNRQPS 469
AN ++ + + L RE +A+ L D +V RHL++GDV+L NRQP+
Sbjct: 472 ANSIEDSNGQVSRISALNVTQRESVAKTLLTPHSSNDQGVKIVHRHLLNGDVLLLNRQPT 531
Query: 470 LHKLSIMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSH 528
LH+ SIM H+AK+ ++ FR + C YNADFDGDEMN H PQ+E AR+EA L+
Sbjct: 532 LHRPSIMAHKAKILSGEKIFRLHYSNCKSYNADFDGDEMNAHFPQSELARSEAYNLV--- 588
Query: 529 NTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAAC 588
AV + P++G L QD I I R FF + + QQL
Sbjct: 589 --AV-----------PHQYLVPKDGTPLGGLIQDHIVSAVKIFIRGKFFNRDDYQQLVFQ 635
Query: 589 LLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMR---PNRRCEV----KANLETK--- 638
L+ ID+ PP I+KP +LW+GKQI S I++ P + + A L K
Sbjct: 636 ALSNHRGD--IDLLPPTILKPARLWSGKQIISTIIKNIIPKKMPHINMIGSAKLGNKHWQ 693
Query: 639 ----------GKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDW 688
G TGN+ + +S VIIRN EL+ G +DK+ G+ T + + + +
Sbjct: 694 TEPAREWHAGGTPLTGNQ---MSESEVIIRNGELLVGILDKNHFGA-TPYGLIHCMYELY 749
Query: 689 GEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLES----GYSKCDGY 744
G + + L+R+ SYY+ GF+ G+ D+ K + + K++++ G+
Sbjct: 750 GGHCSTLLLSSLSRLFSYYLQWEGFTLGVKDILVQKHADKKRAKIIKACRQVGHETA-AS 808
Query: 745 ILEMEKGTLQCQPGCTMEET--------------LEAVMLSELSSIRELAAKACFRELHP 790
L++ + MEE + + S + I E+ P
Sbjct: 809 ALDLPPDVSAEELNSKMEEAYAKNPKFRAILDRKYKTALDSFTNQINEVCLPGGLITKFP 868
Query: 791 TNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGF 850
N +M QSG+KGS +N Q+ +GQ L GKR P +SLP F P + GF
Sbjct: 869 DNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFASFETSPKSGGF 928
Query: 851 VENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNA 910
++ F TG+ P +FFFH M GREGL+DTAVKT+ +GYLQR LVK LE L + YDMTVR++
Sbjct: 929 IDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLNVNYDMTVRDS 988
Query: 911 TGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNAEPLDGD 960
VVQF YG DG+D + + + P L + + A Q + + L D
Sbjct: 989 DNSVVQFMYGEDGMDISKAQFIETPKHLKFLDLNRDAIVQTETVKSLAND 1038
Score = 77.8 bits (183), Expect = 2e-12
Identities = 37/56 (66%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 1040 PGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-ASRNISTP 1094
PG VG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ AS+ I TP
Sbjct: 1180 PGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASQRIKTP 1235
Score = 68.9 bits (161), Expect = 8e-10
Identities = 33/134 (24%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 16 SHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGLG 75
+++ F+V S I++ + +++T+ F + G +P G+ D MG + K C TC
Sbjct: 14 TNLQFSVFSSEDIKRISVTKIVTQRSFDELGHAIPG--GLYDAAMGPSGKGEVCATCVKD 71
Query: 76 LAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEMS 135
+ +C GHFG+I++ +PVF+ + + + +L+ C +C ++ + +S+K + +
Sbjct: 72 MNQCEGHFGHIEICVPVFNPFFVKTVYNLLRICCTDCFRLQIHDSMKSLLELQLQLVDAG 131
Query: 136 YLLKKNLKAVVHKK 149
Y+++ V +K
Sbjct: 132 YIVEAEELEVFKQK 145
>UniRef50_P10964 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=11; Saccharomycetales|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1664
Score = 357 bits (878), Expect = 1e-96
Identities = 229/629 (36%), Positives = 343/629 (54%), Gaps = 58/629 (9%)
Query: 337 KKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPE 396
K P G+ Q L+ K+G FR ++ GKRV++++R+VISPDPN++ E+GVP A LTYPE
Sbjct: 450 KVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPE 509
Query: 397 RVFPANLQWLRRLVCNGPDVHPGANYVQQR--GLKTKKYLKYGNREKIAQEL-------- 446
V N+ LR+ V NGPD PGA +Q L + + R+ +A +L
Sbjct: 510 PVTAYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVS 569
Query: 447 --KCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFD 503
V RH+ + DVVL NRQP+LHK S+M H+ +V P ++T R + YNADFD
Sbjct: 570 THTLNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFD 629
Query: 504 GDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDF 563
GDEMNMH PQ E ARAEAL +L S +TP +G + QD
Sbjct: 630 GDEMNMHFPQNENARAEAL----------------NLANTDSQYLTPTSGSPVRGLIQDH 673
Query: 564 ITGGYLITQRDTFFTKSEAQQ-LAACLLA--GPDATMRIDMPPPAIIKPRKLWTGKQIFS 620
I+ G +T +D+FFT+ + QQ + C+ G +I PP I KP LWTGKQI +
Sbjct: 674 ISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHTTRSKIVTLPPTIFKPYPLWTGKQIIT 733
Query: 621 LIMRPNRRCEVKA-NLETKGK---NYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGT 676
++ ++ NL +K K Y G L ++ V+ ++ L+CG +DKS G+ +
Sbjct: 734 TVLLNVTPPDMPGINLISKNKIKNEYWGKGSL---ENEVLFKDGALLCGILDKSQYGA-S 789
Query: 677 KSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLES 736
K I + L +G E A + + L R+ + Y+ F+ G+ D+ + + + +L++
Sbjct: 790 KYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKT 849
Query: 737 GYS---KCDGYILEMEKGTLQCQPGC--TMEE---------TLEAVMLSELSSIRELAAK 782
+ + ++K T P ++E L+AV S++++I
Sbjct: 850 SVDTGREAAAEVTNLDKDTPADDPELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVS 909
Query: 783 ACF----RELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHF 838
C + P N+ MA SG+KGSN+N+SQ++ +GQQAL G+RVP ++LP F
Sbjct: 910 KCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSF 969
Query: 839 ERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLED 898
+ + A G+V+ FY+G+ P E++FH M GREGL+DTAVKT+ +GYLQR L K LE
Sbjct: 970 KPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEG 1029
Query: 899 LVLQYDMTVRNATGEVVQFRYGSDGLDPT 927
+ + YD ++R+A G +VQF YG D +D T
Sbjct: 1030 VHVSYDNSIRDADGTLVQFMYGGDAIDIT 1058
Score = 87.8 bits (208), Expect = 2e-15
Identities = 48/106 (45%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 1024 RFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKE 1083
+F + KY R +I PG AVG +A+QS+GEP TQMTL TFHFAG + N+T G+PR++E
Sbjct: 1165 KFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLRE 1224
Query: 1084 II-NASRNISTPIITAELMQPYDQEFARRVKGRICTSKLKVKPAEV 1128
I+ AS I TP +T + E A C S KV +EV
Sbjct: 1225 IVMTASAAIKTPQMTLPIWNDVSDEQA----DTFCKSISKVLLSEV 1266
Score = 45.6 bits (103), Expect = 0.008
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
VG +I+ V F + + I+ + ++ + D P G+ D +G ++ C
Sbjct: 7 VGSEITSVDFGILTAKEIRNLSAKQITNPTVL--DNLGHPVSGGLYDLALGAFLRNL-CS 63
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKEC 112
TCGL C GH G+I+L +P ++ +F + L+ C C
Sbjct: 64 TCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFC 105
>UniRef50_A7PWB4 Cluster: Chromosome chr8 scaffold_34, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr8 scaffold_34, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1518
Score = 356 bits (875), Expect = 2e-96
Identities = 248/713 (34%), Positives = 372/713 (52%), Gaps = 72/713 (10%)
Query: 254 LTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWD 313
L + VPP+ RP I E T+ ++L N + A+ + I W
Sbjct: 301 LETILVPPIKFRPPSKGQISV--MEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWM 358
Query: 314 YLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISP 373
LQ IN G A Q + G G+ Q L+ K+G FR + GKRV+F+ R+VISP
Sbjct: 359 DLQQS----INVLFDGKTAAGQ-RDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISP 413
Query: 374 DPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGA-NYVQQRG---LK 429
DP L + E+G+P + A LTYPE+V P N+ LR + NGP++HPGA +YV + L
Sbjct: 414 DPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLA 473
Query: 430 TKKYLKYG-------NREKIAQELKCGD------VVERHLVDGDVVLFNRQPSLHKLSIM 476
K ++ +R +AQ + D +V RHL DGD+VL NRQP+LHK SIM
Sbjct: 474 VNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIM 533
Query: 477 CHRAKV-QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVI 535
H +V + ++T R + C+ YNADFDGDEMN+H PQ E +RAEA ++ ++N
Sbjct: 534 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANN------ 587
Query: 536 IRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDA 595
+ P G+ + QD I L+T++DTF T+ + QL + +
Sbjct: 588 ----------QYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYISVLDSED 637
Query: 596 TMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGK---NYTGNKDLCVQD 652
M+ +P AI KP LW+GKQ+ + ++ R E GK Y G K +
Sbjct: 638 EMQPLLP--AIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGKKKH--GE 693
Query: 653 SYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRG 712
++I +ELV G +DK+ K + +++ +G A + L+R+ + ++ G
Sbjct: 694 YKLLIHKNELVRGVIDKAQFD---KYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHG 750
Query: 713 FSFGIID--VTPGK------KLIEAKN-------KLLESGYSKCDGYILEMEKGTLQCQP 757
F+ G+ D ++P +L +++N K + S + K D L++E +
Sbjct: 751 FTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSN 810
Query: 758 GCTMEETLEAVMLSELSSI-----RELAAKACFRELHPTNAPLIMAQSGSKGSNINISQM 812
G L+ +M +EL+ + ++L K + P N +M +G+KGS +N SQ+
Sbjct: 811 GEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPF-PKNCLSLMTTTGAKGSTVNFSQI 869
Query: 813 IACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGR 872
+ +GQQ L GKRVP ++LP F A GF+ + F TGL P E++FH M GR
Sbjct: 870 SSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGR 929
Query: 873 EGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
EGLVDTAVKT+ +GYLQR L+K+LE L + YD TVR++ G +VQF YG DG+D
Sbjct: 930 EGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVD 982
Score = 89.4 bits (212), Expect = 5e-16
Identities = 47/132 (35%), Positives = 77/132 (58%), Gaps = 6/132 (4%)
Query: 1025 FLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEI 1084
F+ + KY + +PG VG LAAQS+GEP TQMTL TFH AG +N+T G+PR++EI
Sbjct: 1050 FVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEI 1109
Query: 1085 I-NASRNISTPIITAELMQPYDQEFARRVKGRICTSKLKVKPAEVT-AVSAWAIKVTGEP 1142
+ A+ +I TPI+T L ++ A R+ ++ KV A++T ++ + T +
Sbjct: 1110 LMTAANDIKTPIMTCPLQMGRSKDDAERLAAKL----KKVTVADITESMEVSIVPFTVQD 1165
Query: 1143 SKSCGWLNMSLQ 1154
++C + ++
Sbjct: 1166 HQTCSIYKLKMK 1177
Score = 48.8 bits (111), Expect = 9e-04
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 45 DGQRVPAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITI 104
D + P P G+ D +G+ ++ C++CG C GH G+I L V++ F + +
Sbjct: 3 DSVQRPVPGGLYDPALGSIDENTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNL 62
Query: 105 LQTICKECAKVMLPESLKKSY 125
LQ C C SL + Y
Sbjct: 63 LQKTCFFCHHFKTSSSLVQKY 83
>UniRef50_O95602 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=39; Euteleostomi|Rep: DNA-directed RNA polymerase I
subunit RPA1 - Homo sapiens (Human)
Length = 1717
Score = 355 bits (873), Expect = 4e-96
Identities = 247/721 (34%), Positives = 372/721 (51%), Gaps = 73/721 (10%)
Query: 250 EDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQ 309
+D++L R + + + ++ T +++ + ++ I+ L + +
Sbjct: 333 KDVVLIRKLLALMAQEQKLPEEVATPTTDEE----KDSLIAIDRSFLSTLPGQSLIDKLY 388
Query: 310 EDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRT 369
W LQ H + +SEM + M+ K PG + Q L+ K+G FR ++ GKRVD ++R+
Sbjct: 389 NIWIRLQSHVNIVFDSEMDKL---MRDKYPG--IRQILEKKEGLFRKHMMGKRVDSTARS 443
Query: 370 VISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV-QQRGL 428
VI PD + E+G+P+ A LTYP+ V P N+Q LR+ V NGP+VHPGA+ V + G
Sbjct: 444 VICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGS 503
Query: 429 KTK-KYLKYGNREKIAQEL----------KCGDVVERHLVDGDVVLFNRQPSLHKLSIMC 477
+T + RE +A++L + +V RH+ +GD++L NRQP+LH+ SI
Sbjct: 504 RTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQA 563
Query: 478 HRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVII 536
HRA++ P ++ R + C YNADFDGDEMN H PQ+E RAEA +L A T
Sbjct: 564 HRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVL------ACT--- 614
Query: 537 RVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDAT 596
+ P++G+ L QD + G +T R FFT+ +L L D
Sbjct: 615 -------DQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLT--DKV 665
Query: 597 MRIDMPPPAIIKPRKLWTGKQIFS-LIMRPNRRCEVKANLETKGK------------NYT 643
R+ + P+I+KP LWTGKQ+ S L++ + NL K K +
Sbjct: 666 GRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKETPRSVP 725
Query: 644 GNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARM 703
G + +S VIIR EL+CG +DK+ GS + + + +G E + + + LAR+
Sbjct: 726 GFNPDSMCESQVIIREGELLCGVLDKAHYGS-SAYGLVHCCYEIYGGETSGKVLTCLARL 784
Query: 704 -ASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLE-----------SGYSKCDGYILEMEKG 751
+Y + RGF+ G+ D+ K + +++E + + + + +G
Sbjct: 785 FTAYLQLYRGFTLGVEDILVKPKRDVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRG 844
Query: 752 TLQ-CQPGCTMEE--TLEAVMLSELSSIRELAAKACFR-ELH---PTNAPLIMAQSGSKG 804
Q G + ++ E++ KAC LH P N +M QSG+KG
Sbjct: 845 KWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENTLQLMVQSGAKG 904
Query: 805 SNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEF 864
S +N Q+ +GQ L G+ P +SLP FE + P A GFV F TG+ P EF
Sbjct: 905 STVNTMQISCLLGQIELEGRSTPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEF 964
Query: 865 FFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGL 924
FFH M GREGLVDTAVKT+ +GYLQR ++K LE LV+QYD+TVR++ G VVQF YG DGL
Sbjct: 965 FFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1024
Query: 925 D 925
D
Sbjct: 1025 D 1025
Score = 92.7 bits (220), Expect = 5e-17
Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-ASRN 1090
K+QR + EPG AVG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ AS N
Sbjct: 1200 KWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN 1259
Query: 1091 ISTPIITAELMQPYDQEFARRVK 1113
I TP+++ ++ ++ +RVK
Sbjct: 1260 IKTPMMSVPVLN--TKKALKRVK 1280
Score = 49.6 bits (113), Expect = 5e-04
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
R++ ++F + S +++ + ++ IT +L D P+ +G+ D +G C TC
Sbjct: 10 RRLQGISFGMYSAEELKKLS-VKSITNPRYL-DSLGNPSANGLYDLALGPADSKEVCSTC 67
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESL 121
+ C GH G+I+L L V++ F + +L+ C C + P ++
Sbjct: 68 VQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAV 116
>UniRef50_O17628 Cluster: DNA-directed RNA polymerase; n=3;
Caenorhabditis|Rep: DNA-directed RNA polymerase -
Caenorhabditis elegans
Length = 1737
Score = 352 bits (865), Expect = 4e-95
Identities = 251/735 (34%), Positives = 376/735 (51%), Gaps = 79/735 (10%)
Query: 250 EDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIA------RHLASAG 303
+ L L R+ VPP RP + K ED T+ ++L + I+ + SA
Sbjct: 351 DGLFLERILVPPKKFRP--IRMFKGAQYEDPQTLNLRKVLEATETISAISLIMKGDTSAQ 408
Query: 304 KCELIQEDWDYLQLHAAL---YINSEMSGIPLAMQPKKPG-----RGLVQRLKGKQGRFR 355
ELI ++A + Y+ ++ + Q G G+ Q L+ KQG FR
Sbjct: 409 LKELIANRVRGKTINAQMHDAYLQLQLRANAIFDQDLNKGDRDSIAGIKQILEKKQGLFR 468
Query: 356 GNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPD 415
++ GKRV+F+ R+VI+PDP L I E+G+P AK LT+ E V N+ ++ L+ GP
Sbjct: 469 MHMMGKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPH 528
Query: 416 VHPGANY-VQQRGLKTK---KYLKYGNREKIAQELKCGDV--------VERHLVDGDVVL 463
HPGAN+ V+ G KT K + R ++A+ L V RH+ +GD+++
Sbjct: 529 QHPGANFFVEPSGKKTMLGDKPEEKKRRMQMAKTLNAATTENLRQTPKVLRHMKNGDMIM 588
Query: 464 FNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEAL 522
NRQPSLHK SI+ HRA+V QR R N C YNADFDGDEMN HL Q+ A+ E
Sbjct: 589 MNRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTE-- 646
Query: 523 ILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEA 582
V I V SN + P++ L+ QD + G L++ RD F K +
Sbjct: 647 ---------VREIANVG-----SNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDF 692
Query: 583 QQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNY 642
L A + RI++PPP I+ P++LWTGKQ+ + I++ N + K + GK
Sbjct: 693 MHLVLASFA--QYSKRIEIPPPTILYPKRLWTGKQVITTIVK-NCIPDGKPLINLDGKAK 749
Query: 643 T----------GNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEY 692
T + +S+V+ R EL+ G +DK+ G+ T+ + + +G
Sbjct: 750 TPLSCWIVPGFDAPQFDMSESHVVFRQGELLVGVLDKAHFGA-TQFGLAHCAFELYGHRC 808
Query: 693 AVRGMWRLARMASYYMMNRGFSFGIIDV-----TPGKK---LIEAK---NKLLESGYSKC 741
V+ + +R+ + Y+ GF+ G+ D+ GK+ ++E++ N+++++ +
Sbjct: 809 GVQLLSCFSRLFTTYLQFHGFTLGVADILVVKDADGKRKEAVMESRTIGNQVVKTAFGLP 868
Query: 742 DGYILEMEKGTLQ---CQPGC--TMEETLEAVMLSELSSIRELAAKAC----FRELHPTN 792
D K TL C P T + L+ M ++ + K+C L P N
Sbjct: 869 DTATPAEIKRTLAATYCNPRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPTGLLRLFPQN 928
Query: 793 APLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVE 852
A +M QSG+KGS +N Q+ C+GQ L GKR+ R+LP F P A G+++
Sbjct: 929 ALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYID 988
Query: 853 NSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATG 912
F TG+ P E FFHTM GREGL+DTAVKT+ +GYLQR ++K LE + + YD TVR+ G
Sbjct: 989 QRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDG 1048
Query: 913 EVVQFRYGSDGLDPT 927
V+QFRYG DG+D T
Sbjct: 1049 SVIQFRYGEDGMDTT 1063
Score = 84.6 bits (200), Expect = 1e-14
Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 1027 RVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEII- 1085
R + K R + +PG VG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+
Sbjct: 1218 RTLYWKGMRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM 1277
Query: 1086 NASRNISTP 1094
AS++I+TP
Sbjct: 1278 TASKSIATP 1286
Score = 44.0 bits (99), Expect = 0.025
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 50 PAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTIC 109
P G+ D +G + C TC C GH G+IQL +PVF+ F+ +L+ C
Sbjct: 48 PIAGGLYDPILGPDNTFDMCMTCNQYERHCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSC 107
Query: 110 KECAKV 115
C ++
Sbjct: 108 VHCHRL 113
>UniRef50_UPI0000DB7146 Cluster: PREDICTED: similar to RNA
polymerase I subunit CG10122-PA; n=1; Apis
mellifera|Rep: PREDICTED: similar to RNA polymerase I
subunit CG10122-PA - Apis mellifera
Length = 1665
Score = 349 bits (859), Expect = 2e-94
Identities = 238/681 (34%), Positives = 352/681 (51%), Gaps = 73/681 (10%)
Query: 294 VIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGR 353
V+ H+ E + W LQ++ ++ +M+ +GL Q ++ K+G
Sbjct: 324 VVYDHIKGNTAIEKLHNAWQNLQVNVDHLMDRDMN----RTTDSANCQGLKQVIEKKEGI 379
Query: 354 FRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNG 413
R ++ GKRV+F++R+VI+PDPNL I E+G+P A LTYP V P N+ LR+LV NG
Sbjct: 380 IRMHMMGKRVNFAARSVITPDPNLNIDEIGIPEAFALKLTYPTPVTPWNVVQLRQLVLNG 439
Query: 414 PDVHPGANYVQQR--GLKTKKYLKYGNREKIAQEL-----------KCGDVVERHLVDGD 460
P++HPGA ++ ++ RE IA+ L K +V RHL +GD
Sbjct: 440 PNIHPGAVMIENEDGSIQRISISDAIQREAIAKRLLTTSDKANKFFKGIKIVHRHLQNGD 499
Query: 461 VVLFNRQPSLHKLSIMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARA 519
++L NRQP+LHK SIM H+A++ + ++T R + C YNADFDGDE+N H PQ E AR+
Sbjct: 500 ILLLNRQPTLHKPSIMAHKARILKGEKTLRLHYANCKSYNADFDGDEINAHHPQNELARS 559
Query: 520 EALILMGSHNTAVTVIIRVSLEQNKSN-LVTPRNGELLIAATQDFITGGYLITQRDTFFT 578
E +N A N SN + P++G L QD I G +T R TFF+
Sbjct: 560 E------GYNIA-----------NVSNQYLVPKDGTPLSGLIQDHIISGVRLTVRGTFFS 602
Query: 579 KSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSL----IMRPNR-RCEVKA 633
+ + QL L+ I + PP+IIKP LW+GKQI S I+ PN+ R + A
Sbjct: 603 REDYMQLVYAALS--TIQDNIILLPPSIIKPIALWSGKQIISTVIINIIPPNQARINLTA 660
Query: 634 NLETKGKNYTGNKD---LC---------VQDSYVIIRNSELVCGSMDKSTLGSGTKSSIF 681
N + K + K C + ++ VIIRN EL+CG +DK+ G+ T +
Sbjct: 661 NAKINVKQWQIEKTRHWKCGTEFSNPNTMSEAEVIIRNGELLCGVLDKTHYGA-TPFGLV 719
Query: 682 YILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGY--- 738
+ + +G + + + ++ + GF+ GI D+ KK + + +++ +
Sbjct: 720 HCIFELYGGTCSSKLLSAFGKLFQAALQRNGFTLGIEDILLLKKADKKRKEIISNCRKIG 779
Query: 739 SKCDGYILEMEKGTLQCQPGCTMEET--------------LEAVMLSELSSIRELAAKAC 784
+LE+ T MEE+ + + + I ++ A
Sbjct: 780 ENIQKSVLELPNDTPMNIVTSKMEESYWNDPKFRAQVDRKYKTALDIYTNDINKICLPAG 839
Query: 785 FRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKI 844
+ P N +M QSG+KGS +N Q+ +GQ L GKR P +SLP F +
Sbjct: 840 LLKKFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFPAYDPT 899
Query: 845 PAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYD 904
P A GF++ F TG+ P EFFFH M GREGL+DTAVKT+ +GYLQR L+K LE LV+ YD
Sbjct: 900 PRAGGFIDGRFMTGIKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLVINYD 959
Query: 905 MTVRNATGEVVQFRYGSDGLD 925
TVR++ G +VQ YG DGLD
Sbjct: 960 STVRDSDGSLVQIYYGEDGLD 980
Score = 83.0 bits (196), Expect = 4e-14
Identities = 47/94 (50%), Positives = 63/94 (67%), Gaps = 8/94 (8%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEII-NASRN 1090
K + V PG VG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ AS+N
Sbjct: 1149 KVMKVVCPPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKN 1208
Query: 1091 ISTPIITAELMQPYDQEFARRVKGRICTSKLKVK 1124
I TP + E+ P+ ++ +K ++KLK+K
Sbjct: 1209 IKTP--SMEI--PFRKDLKNVIKR---SNKLKLK 1235
Score = 44.4 bits (100), Expect = 0.019
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 50 PAPHGVLDRRMGTNQKDAN-CETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTI 108
P G+ D +G + ++ C TCG + +C GHFG+I+L +PV + + + + +++
Sbjct: 51 PLKGGLYDPALGPLLESSDPCGTCGCNVFKCPGHFGHIELPMPVINPLFHKGLCMLIKLA 110
Query: 109 C 109
C
Sbjct: 111 C 111
>UniRef50_A5H289 Cluster: DNA-directed RNA polymerase; n=39;
Fungi/Metazoa group|Rep: DNA-directed RNA polymerase -
Phaeophyscia orbicularis
Length = 1007
Score = 349 bits (859), Expect = 2e-94
Identities = 198/460 (43%), Positives = 273/460 (59%), Gaps = 31/460 (6%)
Query: 471 HKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNT 530
HK S+M HR +V P TFR N V +PYNADFDGDEMN+H+PQ+EE RAE N
Sbjct: 390 HKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEV-------NQ 442
Query: 531 AVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLL 590
V + + Q RNG L+ QD + G Y + +RD F TK + LL
Sbjct: 443 LCMVPLNIVSSQ--------RNGPLM-GIVQDTLCGIYKMCRRDVFMTKEAVMNI---LL 490
Query: 591 AGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCV 650
PD I P PAI+KPR +WTGKQI SL++ P +K + ET+G + +
Sbjct: 491 WVPDWDGVI--PQPAILKPRPMWTGKQILSLVIPPGLNY-IKLH-ETEGF-------MSL 539
Query: 651 QDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMN 710
D + EL+ G +DK +G+ T+ I +++ + G + A+ + +Y++++
Sbjct: 540 TDEGQFVSGGELMFGLLDKKAVGAATQG-IIHLIFNELGSDAAMSFFNGAQTVVNYWLLH 598
Query: 711 RGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVML 770
GFS GI D P ++ I ++ + + + L+ PG + +T E+ +
Sbjct: 599 NGFSIGIGDTIPDRETINRIKTVVNVQKVEVEKITQSAQLNELESLPGMNVRDTFESKVS 658
Query: 771 SELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGF 830
+ L+ RE A K L N + MA+SGSKGS+INISQM A VGQQ++ GKR+P GF
Sbjct: 659 TALNKAREEAGKVTEESLKDVNNAIQMARSGSKGSSINISQMTAVVGQQSVEGKRIPFGF 718
Query: 831 EDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQR 890
+ RSLPHF + P +RGFVENS+ GLTPTEFFFH M GREGL+DTAVKTAETGY+QR
Sbjct: 719 KYRSLPHFAKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQR 778
Query: 891 RLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYME 930
RLVK+LED++ +YD TVRN+ G++VQF YG DGLD ++E
Sbjct: 779 RLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIE 818
Score = 147 bits (356), Expect = 2e-33
Identities = 101/305 (33%), Positives = 155/305 (50%), Gaps = 12/305 (3%)
Query: 78 ECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEMSYL 137
EC GHFG+I+L +PVF + A ++ K CA + L KS F +
Sbjct: 1 ECPGHFGHIELAVPVFRI----ASXPRSRSCLKRCATTVAKSKLTKSSTIGFKDALRVRD 56
Query: 138 LKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKK---V 194
KK + + K C + + K ++ K + P V++
Sbjct: 57 PKKRFDQI-WRLCKPKLICETSSNPDDEEKDAAKSPTKAAPTGHGGCGNVQPEVRRDGLK 115
Query: 195 LMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLIL 254
LM + ++ + E + ++P LN+F+ + +EDI ++G++ +RPE +I+
Sbjct: 116 LMGTWKPQKGDDENEGQ--QAEKRPITPAMALNVFQHMSNEDIKMMGLSNDYARPEWMII 173
Query: 255 TRLPVPPLCIRPSVVSDIKAG-TNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWD 313
T LPVPP +RPS+ D G T EDDLT K +I+ N + R +I+E
Sbjct: 174 TVLPVPPPPVRPSIRMDSGDGPTGEDDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFET 233
Query: 314 YLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVIS 372
LQ H A Y++++ +G P A+Q +P + + RLKGK+GR RGNL GKRVDFS+RTVI+
Sbjct: 234 LLQFHVATYMSNDTAGQPQALQKSGRPVKAIRARLKGKEGRVRGNLMGKRVDFSARTVIT 293
Query: 373 PDPNL 377
DPNL
Sbjct: 294 GDPNL 298
>UniRef50_A1CP71 Cluster: DNA-directed RNA polymerase; n=8;
Eurotiomycetidae|Rep: DNA-directed RNA polymerase -
Aspergillus clavatus
Length = 1734
Score = 348 bits (855), Expect = 6e-94
Identities = 229/625 (36%), Positives = 341/625 (54%), Gaps = 58/625 (9%)
Query: 342 GLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPA 401
G+ Q L+ K+G FR N+ GKRV+F++R+VISPDPN++ E+GVP+ AK LTYPE V
Sbjct: 517 GIKQILEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNH 576
Query: 402 NLQWLRRLVCNGPDVHPGANYVQ-QRGLKTK-KYLKYGNREKIAQELKC----------G 449
N +++ V NGPD +PGA ++ + G T K+ R +A +L
Sbjct: 577 NFWEMKQAVINGPDKYPGATAIENELGQVTNLKFKSLDERTALANQLLAPSNWRMKGSRN 636
Query: 450 DVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEMN 508
V RHL GDVVL NRQP+LHK SIM H+A+V +R R + C YNADFDGDEMN
Sbjct: 637 KKVYRHLTTGDVVLMNRQPTLHKPSIMGHKARVLANERVIRMHYANCNTYNADFDGDEMN 696
Query: 509 MHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGY 568
MH PQ E ARAEA++L + + + +G+ L QD I+ G
Sbjct: 697 MHFPQNELARAEAMMLADADH----------------QYLVATSGKPLRGLIQDHISMGT 740
Query: 569 LITQRDTFFTKSEAQQLA-ACLLAGPDATM--RIDMPPPAIIKPRKLWTGKQIFSLIMRP 625
T RDTFF + + +L +CL T+ RI + P ++KP +LWTGKQ+ + I++
Sbjct: 741 WFTCRDTFFNEEDYYELLYSCLRPENSHTITERIQLVEPTVLKPTRLWTGKQVITTILK- 799
Query: 626 NRRCEVKANLETKGKNYT-GNK-DLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYI 683
N +A L K K+ T G++ ++ VI ++ E++CG +DK +G T +
Sbjct: 800 NIMPPGRAGLNLKSKSSTPGDRWGEGNEEGSVIFKDGEMLCGILDKKQIGP-TAGGLVDA 858
Query: 684 LLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDG 743
+ +G A R + L R+ + Y+ R F+ GI D+ K+ + + +++ S
Sbjct: 859 IHEIYGHTIAGRLISILGRLLTRYLNMRAFTCGIDDLRLTKEGDQVRKQIISQAASAGRD 918
Query: 744 YILE---MEKGTLQCQP------------GCTMEETLEAVMLSELSSIRELAAKAC---- 784
L+ +++ T+ Q + L++V ++++ + KAC
Sbjct: 919 VALKYVTLDQTTVPDQDTELRRRLEDVLRDDDKQSGLDSVSNAQMAKLSTEITKACLPKG 978
Query: 785 FRELHPTNAPLIMAQSGSKGSNINISQMIAC-VGQQALNGKRVPNGFEDRSLPHFERHSK 843
+ P N M SG+KGS +N + +I+C +GQQ L G+RVP ++LP F
Sbjct: 979 LAKPFPWNQMQSMTISGAKGSGVN-ANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDT 1037
Query: 844 IPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQY 903
P A GFV F TG+ P E++FH M GREGL+DTAVKT+ +GYLQR L+K +E L +Y
Sbjct: 1038 HPMAGGFVCGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEY 1097
Query: 904 DMTVRNAT-GEVVQFRYGSDGLDPT 927
D +VR ++ G ++QF YG DGLD T
Sbjct: 1098 DTSVRESSDGSIIQFLYGEDGLDIT 1122
Score = 89.0 bits (211), Expect = 7e-16
Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 1025 FLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEI 1084
F + + KY + V++PG AVG +A QSIGEP TQMTL TFH AG ++ N+T G+PR++EI
Sbjct: 1230 FNTLMNMKYLKSVVDPGEAVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREI 1289
Query: 1085 I-NASRNISTPIITAELMQPYDQEFARRVKGRICTSKLKVKPAEVTAVSAWAIKVTGEPS 1143
+ AS +I TP +T L + +E + R I SKL + I TG S
Sbjct: 1290 VMTASAHIMTPTMTLILNEELSKEDSERFAKAI--SKLSIAEVVDKVQVKERISSTGSRS 1347
Query: 1144 K 1144
K
Sbjct: 1348 K 1348
Score = 48.0 bits (109), Expect = 0.002
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 50 PAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTIC 109
P P G+ D +G D C TC C GH G+I+L + V++V +F + +L+ C
Sbjct: 98 PVPGGLYDPALGA-WGDHVCATCRQNAWSCTGHPGHIELPVHVYNVTFFDQLFRLLRAQC 156
Query: 110 KECAKVMLPESLKKSY 125
C + +P +Y
Sbjct: 157 VYCHRFQMPRVQVNAY 172
>UniRef50_A5DCV3 Cluster: DNA-directed RNA polymerase II subunit
RPB1; n=193; Eukaryota|Rep: DNA-directed RNA polymerase
II subunit RPB1 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 1579
Score = 348 bits (855), Expect = 6e-94
Identities = 218/582 (37%), Positives = 321/582 (55%), Gaps = 50/582 (8%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
R + V F + SP ++ + ++ Q +R P G+ D R+G+ ++ C+TC
Sbjct: 13 RSVKEVQFGLLSPEEVRAISVAKIEYPETMDQATKR-PREGGLNDPRLGSIDRNFKCQTC 71
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
G +AEC GHFG+I+L PVFH+G+ I + + +C C K++L ES NP
Sbjct: 72 GEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDES----------NP 121
Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCPS---CEAINGMVKKSSIGILKIVHEKYRAKKP--- 186
M+ ++ ++ + ++ C CEA +++ G +E R +
Sbjct: 122 AMAQAIR--IRDPKKRFNAVWNLCKGKMICEA--DVLQDDGEG-----NEPKRTSRGGCG 172
Query: 187 -TDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVK 245
T P+V+K + + NK + ++P E+LN+F+ I ED LG N
Sbjct: 173 HTQPVVRKDGLKLWGTWKQNKNYDETEQPER-RLLTPSEILNVFKHINSEDCVRLGFNED 231
Query: 246 LSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKC 305
+RPE +++T LPVPP +RPS+ + A EDDLT K ++++ N + R
Sbjct: 232 YARPEWMLITVLPVPPPPVRPSIAFNDTA-RGEDDLTFKLADVIKANINVQRLELDGSPQ 290
Query: 306 ELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVD 364
+I E LQ H A Y++++++G P A+Q +P + + RLKGK+GR RGNL GKRVD
Sbjct: 291 HVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVD 350
Query: 365 FSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQ 424
FS+RTVIS DPNL + +VGVP+ +A+ LTYPE V P N+ L V NGP+ HPGA YV
Sbjct: 351 FSARTVISGDPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVI 410
Query: 425 QRGLKTKKYLKYGNRE-KIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQ 483
R + L+Y R IA L+ G VERHL+D D VLFNRQPSLHK+S+MCHR KV
Sbjct: 411 -RDTGDRIDLRYNKRAGDIA--LQYGWKVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVM 467
Query: 484 PQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQN 543
P TFR N V +PYNADFDGDEMN+H+PQ+ E RAE ++ I V L+
Sbjct: 468 PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAE-----------LSEICAVPLQ-- 514
Query: 544 KSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQL 585
+V+P++ + ++ QD + G +T RD F + +
Sbjct: 515 ---IVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIEYDQVMNM 553
Score = 197 bits (480), Expect = 2e-48
Identities = 89/136 (65%), Positives = 108/136 (79%)
Query: 797 MAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFY 856
M SGSKGS INISQM ACVGQQ + GKR+P GF DRSLPHF + P ++GFVENS+
Sbjct: 578 MVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYL 637
Query: 857 TGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQ 916
GLTP EFFFH M GREGL+DTAVKTAETGY+QRRLVK+LED+++ YD T RN+ G+++Q
Sbjct: 638 RGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQ 697
Query: 917 FRYGSDGLDPTYMEGK 932
F YG DG+D T +E +
Sbjct: 698 FVYGEDGVDGTQVESQ 713
Score = 98.3 bits (234), Expect = 1e-18
Identities = 48/93 (51%), Positives = 66/93 (70%), Gaps = 2/93 (2%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNI 1091
++Q+ ++ PG VG +AAQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEI+N ++NI
Sbjct: 885 QFQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNI 944
Query: 1092 STPIITAELMQPY--DQEFARRVKGRICTSKLK 1122
TP +T L + D E A+ V+ I + LK
Sbjct: 945 KTPALTVYLEKDIAADIEKAKVVQSAIEHTTLK 977
>UniRef50_UPI0000E46841 Cluster: PREDICTED: similar to RNA polymerase
I large subunit; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to RNA polymerase I large subunit -
Strongylocentrotus purpuratus
Length = 1742
Score = 347 bits (853), Expect = 1e-93
Identities = 244/708 (34%), Positives = 356/708 (50%), Gaps = 79/708 (11%)
Query: 271 DIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGI 330
D++ G E D+ + + ++ I + E +Q LQ H I+S++ I
Sbjct: 343 DVENGVMEIDVKLTVKDKENVDQSILSTIPGKTLPEKLQNALTQLQTHVNCVIDSDLDKI 402
Query: 331 PLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAK 390
P G+ Q L+ K+G FR ++ GKRV++++R+VISPDP + E+G+P +AK
Sbjct: 403 STDKAP-----GIKQLLERKEGLFRKHMMGKRVNYAARSVISPDPYINTDEIGIPQVIAK 457
Query: 391 ILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQ-QRGLKTK-KYLKYGNREKIAQELKC 448
LTYP+ V N Q LR++V NGPDVHPGA ++ + G + + + RE +A+ L
Sbjct: 458 RLTYPQPVTDWNAQELRQMVMNGPDVHPGALLIENEDGSQVRLRADNQSQRESVAKRLLT 517
Query: 449 ----------GDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTP 497
V RHL GD+VL NRQP+LHK IM H+ +V P ++T R + C
Sbjct: 518 PSNINKQNTGSKKVHRHLQTGDIVLLNRQPTLHKPGIMAHKVRVLPGEKTLRLHYSACKT 577
Query: 498 YNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLI 557
YNADFDGDEMN+H PQ E RAEAL + +++ + P++G L
Sbjct: 578 YNADFDGDEMNVHFPQNELGRAEALTIASTNH----------------QYLVPKDGTPLG 621
Query: 558 AATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQ 617
QD I G +T R FFT+ E QQL C L + ++ PP I KP LW+GKQ
Sbjct: 622 GLIQDHIISGVRMTVRGRFFTRLEYQQLVYCSLTDKEGPVK--CLPPCIRKPALLWSGKQ 679
Query: 618 IFSLIMRPNRRCEVKANLETKGKNYTGNKDLC------------------VQDSYVIIRN 659
+ S I+ N E L+ GK+ NK C + +S VIIR
Sbjct: 680 LISTII-INTIPEGCKPLDFIGKSKINNKSWCKAEPRPPKAGGGALVGTDMCESEVIIRE 738
Query: 660 SELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARM-ASYYMMNRGFSFGII 718
EL+ G +DK G T + + + +G A + + R+ ++ + GF+ G
Sbjct: 739 GELLSGVLDKGNYGP-TPYGLVHCIYELYGGHIAGKLLSHFGRLFTTFLQQHTGFTLGPE 797
Query: 719 DVTPGKKLIEAKNKLLESGY---SKCDGYILEMEKGT-------------LQCQP-GCTM 761
D+ K E + +LE S+ L +E+ T +P G M
Sbjct: 798 DIIVLDKADEKRLDILEESKDCGSEAVAQALGVEEFTGFHASTLTKRYEIAHRKPDGSDM 857
Query: 762 EETLEAVMLSELSSIRELAAKAC----FRELHPTNAPLIMAQSGSKGSNINISQMIACVG 817
+E ++ M ++ + C + P N ++ SG+KGS +N Q+ +G
Sbjct: 858 KE-IDLQMKTKTDLYSNQVSSTCLGSGLLKQFPENNLQLVVLSGAKGSMVNCLQISCLLG 916
Query: 818 QQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVD 877
Q L G+R P RSLP F + P + G+V F TG+ P E+FFH M GREGLVD
Sbjct: 917 QIELEGRRPPLMVSGRSLPSFPPYETSPRSGGYVAGRFLTGIKPQEYFFHCMAGREGLVD 976
Query: 878 TAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
TAVKT+ +GYLQR ++K LE LV+ YD TVR++ G +VQF+YG DGLD
Sbjct: 977 TAVKTSRSGYLQRCIIKHLEGLVVNYDQTVRDSDGSIVQFQYGEDGLD 1024
Score = 100 bits (240), Expect = 2e-19
Identities = 51/100 (51%), Positives = 67/100 (67%), Gaps = 4/100 (4%)
Query: 1030 HHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-AS 1088
+ KYQR + +PG AVG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ AS
Sbjct: 1198 YSKYQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMVAS 1257
Query: 1089 RNISTPIITAELMQPYDQEFARRVKGRICTSKLKVKPAEV 1128
NI TP +T + P + + + GRIC +V ++V
Sbjct: 1258 ANIKTPSMTIPFLNP---DISAKKIGRICRQLSRVHLSQV 1294
Score = 60.5 bits (140), Expect = 3e-07
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
+++ V F+ S ++Q + E+ F G P G+ D +G + +D C TC
Sbjct: 9 KRVDSVRFSTYSSQDLKQLSVKELTNPRSFDDLGH--PTLGGLYDPALGPSDRDELCGTC 66
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLP 118
LG C GH G++ L LPVF+ +F + +L C EC ++ P
Sbjct: 67 SLGQFHCPGHMGHVTLPLPVFNPLFFPLVRQLLHGSCLECNHLLAP 112
>UniRef50_Q4PB85 Cluster: DNA-directed RNA polymerase; n=1; Ustilago
maydis|Rep: DNA-directed RNA polymerase - Ustilago maydis
(Smut fungus)
Length = 1795
Score = 347 bits (853), Expect = 1e-93
Identities = 244/703 (34%), Positives = 367/703 (52%), Gaps = 79/703 (11%)
Query: 452 VERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMH 510
V RHL DGD++L NRQP+LH+ S+M H+A+V ++T R + C YNADFDGDEMNMH
Sbjct: 647 VLRHLRDGDILLLNRQPTLHRPSMMAHKARVLVGEKTIRMHYANCNSYNADFDGDEMNMH 706
Query: 511 LPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLI 570
PQ++ ARAE + + N +TP +G L QD + G +
Sbjct: 707 FPQSQAARAECYYVANTDN----------------QYLTPTSGNPLRGLIQDHVVAGVWM 750
Query: 571 TQRDTFFTKSEAQQLAACLLAGPDATM----RIDMPPPAIIKPRKLWTGKQIFSLIMRPN 626
T ++T +T++E QQ+ L P+ R+ PPA++KP LWTGKQ+ S ++
Sbjct: 751 TSKNTLYTRAEYQQMLYGALR-PEGKYTGGGRVLTVPPALLKPEPLWTGKQVISTVLLNL 809
Query: 627 RRCEVKA-NLETKGK--NYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYI 683
+ + NL +K K KD ++ VII + EL+ G +DK+ G+ + + +
Sbjct: 810 KPAKADGLNLTSKAKVAGRMWGKDHASEEK-VIIEDGELLQGVLDKAAFGASS-FGLVHA 867
Query: 684 LLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDG 743
+ +G E A + + L+R+ + ++ FS + D+ K+ E + L++ ++ G
Sbjct: 868 IFEIYGSETAGKLLSILSRLFTKFLQTNAFSCRMDDLLLSKEGDEWRRTTLDAAKNQGKG 927
Query: 744 YILEME--KGTLQCQPGCT------MEETLE-----AVMLSEL--------SSIRELAAK 782
++ +G + P +EE L AV+ E+ S I E
Sbjct: 928 VAMKTVGLEGEDEKNPDTDRNLRIRLEEVLRDDDKLAVLDGEMMNSSNALTSKIIESCLP 987
Query: 783 ACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHS 842
A + P N +M SG+KGS +N+SQ+ +GQQAL G+RVP +SLP F
Sbjct: 988 AGLYKKFPENNMQMMTGSGAKGSAVNVSQISCLLGQQALEGRRVPLMVSGKSLPSFRPFE 1047
Query: 843 KIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
A GFV F TG+ P E+FFH M GREGL+DTAVKT+ +GYLQR L+K LE + +Q
Sbjct: 1048 TSARAGGFVSGRFLTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVHIQ 1107
Query: 903 YDMTVRNATGEVVQFRYGSDGLDPT---YMEGKD-------------RPVDLARVL-ADV 945
YD TVRNA G V+QF YG D LD T Y+ D P L V+ A++
Sbjct: 1108 YDNTVRNADGSVLQFNYGEDALDTTKSKYIGQFDFTAANFENYNKRYDPKQLGEVVEAEL 1167
Query: 946 RAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFKNELLSFLKATAGRVRA------ 999
A+ K + VL+ L F + ++++ E+ ++++ ++ A
Sbjct: 1168 AAEHMKKALKKPHKYDPVLSV--YLPSTHFGSMSEKYAKEIEAYIEKNPSKLLADKKKKS 1225
Query: 1000 -LRARYAGCGRAALQLERLTLTQ----LVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGE 1054
R A A +E+L + + F +C Y RG+++PG AVG LAAQ +GE
Sbjct: 1226 KKRKSEASAPDEATAVEKLRFAKEKLGVEAFRAMCKVLYHRGLVDPGEAVGLLAAQGVGE 1285
Query: 1055 PGTQMTLKTFHFAGVASMNITQGVPRVKEII-NASRNISTPII 1096
P TQMTL TFHFAG + N+T G+PR++EI+ AS++I TPI+
Sbjct: 1286 PSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQHIKTPIM 1328
Score = 93.9 bits (223), Expect = 2e-17
Identities = 54/134 (40%), Positives = 85/134 (63%), Gaps = 3/134 (2%)
Query: 315 LQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPD 374
LQ+ +I++ + +PL Q + P G+ Q L+ K+G FR ++ GKRV+F++R+VISPD
Sbjct: 484 LQVDVNSFIDASKNPMPLR-QGQLPPPGVKQGLEKKEGLFRKHMMGKRVNFAARSVISPD 542
Query: 375 PNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQ-QRGLKTK-K 432
N++ E+GVP A+ LTYPE V N+Q +R+LV NGP +PGA ++ + G +T+
Sbjct: 543 VNIETNEIGVPPVFARKLTYPEPVTVHNVQLMRQLVINGPFKYPGAVAIRSEDGTETQLD 602
Query: 433 YLKYGNREKIAQEL 446
L R +A +L
Sbjct: 603 KLSVEERTALANQL 616
Score = 55.2 bits (127), Expect = 1e-05
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 15 ISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGL 74
IS +F+ + I++ + ++I N L D P G+ D +G + + C TC L
Sbjct: 11 ISSASFSFLTAEDIRRISVKQII--NPVLLDTTNHPNAGGLYDPALGPMRPNDICSTCHL 68
Query: 75 GLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLP 118
+C GHFG+I+L PVFH + + +L+ C C + LP
Sbjct: 69 NSYQCPGHFGHIELPSPVFHPLFMGNMFNLLRGTCFYCHRFRLP 112
>UniRef50_UPI00015B5184 Cluster: PREDICTED: similar to DNA-directed
RNA polymerase I largest subunit; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to DNA-directed RNA
polymerase I largest subunit - Nasonia vitripennis
Length = 1694
Score = 346 bits (850), Expect = 3e-93
Identities = 234/668 (35%), Positives = 345/668 (51%), Gaps = 71/668 (10%)
Query: 306 ELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDF 365
E + W LQ + I+ +MS + + GL Q ++ KQG R ++ GKRV++
Sbjct: 375 EKLHNAWQELQANVDHLIDRDMSKTTESANCQ----GLKQVIEKKQGVIRMHMMGKRVNY 430
Query: 366 SSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQ- 424
++R+VI+PDPNL I E+G+P A LTYP V P N+ LR+L+ NGPDVHPGA ++
Sbjct: 431 AARSVITPDPNLNIDEIGIPEAFATKLTYPVPVTPWNVAELRQLILNGPDVHPGAVMIEG 490
Query: 425 QRGLKTKKYLK-YGNREKIAQEL-----KCG------DVVERHLVDGDVVLFNRQPSLHK 472
G T+ + Y RE IA+ L K +V RHL +GD++L NRQP+LHK
Sbjct: 491 DDGFITRLTAENYVQREAIAKRLLTVTEKANKFFHGVKIVHRHLQNGDMLLLNRQPTLHK 550
Query: 473 LSIMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTA 531
SIM H+A++ + ++T R + C YNADFDGDEMN H PQ E ARAE + N
Sbjct: 551 PSIMAHKARILKGEKTLRLHYANCKAYNADFDGDEMNAHFPQNELARAEGYYIANVSN-- 608
Query: 532 VTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLA 591
+ P++G L QD + G ++ R FF K + QL L+
Sbjct: 609 --------------QYLVPKDGTPLSGLIQDHMIAGVRLSLRGKFFEKEDYMQLVFSALS 654
Query: 592 GPDATMRIDMPPPAIIKPRKLWTGKQIFS-LIMRPNRRCEVKANLE------------TK 638
+ + PPAIIKP +W+GKQ+ S +I+ R + NL TK
Sbjct: 655 VIQG--NLILLPPAIIKPIPMWSGKQVISTIIINIIPRGKALINLTAGAKIGAHEWQVTK 712
Query: 639 GKNYTGNKDL----CVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAV 694
+ + ++ + +S VIIRN EL+CG +DK G+ T + + + +G +
Sbjct: 713 PRPWKCGEEFKNPKTMSESEVIIRNGELLCGILDKKHYGA-TPFGLIHCVFELYGGTTSS 771
Query: 695 RGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGY---ILEMEKG 751
R + ++ Y+ GF+ GI D+ +K + + +++ + ILE+ +
Sbjct: 772 RLLSAFGKVFQSYLQRIGFTLGIEDILVKQKADKKRTEIISECRKIGESIHKSILEVPED 831
Query: 752 TLQCQPGCTMEET--------------LEAVMLSELSSIRELAAKACFRELHPTNAPLIM 797
T MEE+ + + ++I + A + P N +M
Sbjct: 832 TPMEIVTAKMEESYWSNPKFRAQVDRKYKTALDVYTNNINKTCLPAGLIKTFPENNLQLM 891
Query: 798 AQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYT 857
QSG+KGS +N Q+ +GQ L GKR P +SLP F + P A GF++ F T
Sbjct: 892 VQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFPAYDPAPRAGGFIDGRFMT 951
Query: 858 GLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQF 917
G+ P EFFFH M GREGL+DTAVKT+ +GYLQR L+K +E L++ YD TVR++ G +VQ
Sbjct: 952 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHMEGLMINYDATVRDSDGSLVQI 1011
Query: 918 RYGSDGLD 925
YG DGLD
Sbjct: 1012 YYGEDGLD 1019
Score = 81.0 bits (191), Expect = 2e-13
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEII-NASRN 1090
K + PG VG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ AS+N
Sbjct: 1190 KVMNTLCPPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKN 1249
Query: 1091 ISTP 1094
I TP
Sbjct: 1250 IKTP 1253
Score = 54.4 bits (125), Expect = 2e-05
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 3 KEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMG- 61
K +R T + F+V + I+ + ++ T + F G P G+ D +G
Sbjct: 6 KSGFRMTVKHLDPKSLAFSVFTADDIKNLSVKKITTPDSFNVLGH--PLIGGLHDPALGP 63
Query: 62 -TNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPES 120
T+ D C TCG + +C GHFG+I L +PV + + +A+ T+L+ C C + +P
Sbjct: 64 LTDTSDP-CRTCGCNVYKCTGHFGHIDLPMPVINPLFHKALQTLLKLACLNCFSLQIPPL 122
Query: 121 LK 122
K
Sbjct: 123 AK 124
>UniRef50_UPI0000D56583 Cluster: PREDICTED: similar to CG10122-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG10122-PA - Tribolium castaneum
Length = 1619
Score = 342 bits (840), Expect = 4e-92
Identities = 228/632 (36%), Positives = 334/632 (52%), Gaps = 68/632 (10%)
Query: 342 GLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPA 401
GL Q ++ K G R ++ GKRV+FS+RTVI+PDPNL I E+G+P AK LTYP V
Sbjct: 401 GLKQIIEKKTGIIRMHMMGKRVNFSARTVITPDPNLNIDEIGIPEVFAKHLTYPVPVTSW 460
Query: 402 NLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGN---REKIAQELKCGDV------- 451
N++ LR+++ NGPDVHPGA V+ T K + N +E I + L D
Sbjct: 461 NVEELRKMIMNGPDVHPGAVMVEYED-GTIKRINTNNTTQQESILKRLLTPDKIVGFRGV 519
Query: 452 --VERHLVDGDVVLFNRQPSLHKLSIMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEMN 508
V RHL +GDV+L NRQP+LHK SIM H A+V + ++TFR + C YNADFDGDEMN
Sbjct: 520 KRVHRHLCNGDVLLLNRQPTLHKPSIMAHTARVLKGEKTFRLHYANCKAYNADFDGDEMN 579
Query: 509 MHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGY 568
H PQ E AR+EA L+ N + P++G L QD + G
Sbjct: 580 AHFPQNELARSEAYNLVNVCN----------------QYLVPKDGTPLSGLIQDHMIAGV 623
Query: 569 LITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFS-----LIM 623
++ R FF + + + LA + T +I + PPAIIKP +LW+GKQI S +I
Sbjct: 624 KLSLRGRFFNEVDYKHFVFQALA--NKTGKIILLPPAIIKPCQLWSGKQILSTVFINIIP 681
Query: 624 RPNRRCEVKANLETKGKNYT----------GNKDL---CVQDSYVIIRNSELVCGSMDKS 670
+ R + A+ + K + G++ + + ++ V+IR EL+ G +DK+
Sbjct: 682 EGHERINLTASAKISAKAWQTAPPRKWKGGGSRFVNPNTMSEAEVVIRGGELLVGVLDKT 741
Query: 671 TLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAK 730
G+ T + + + +G YA + LA++ + ++ GF+ G+ D+ +K + +
Sbjct: 742 HYGA-TPYGLVHCMYELYGGVYATGLLSALAKLFTRFLQKEGFTLGVHDILTVEKADQRR 800
Query: 731 NKLLESGYS------------KCDGYILEM-----EKGTLQCQPGCTMEETLEAVMLSEL 773
+++E D I E+ E + T++ + + S
Sbjct: 801 RQIIEGARKIGLDVITTALDMPRDSPIEEIVDKIRENSVKNPKWRATVDRQYKTALDSFT 860
Query: 774 SSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDR 833
+ I + A P N +M QSG+KG+ +N Q+ +GQ L GKR P +
Sbjct: 861 NDINKTCLPAGLVLKFPENNLQLMVQSGAKGTTVNTMQISCLLGQIELEGKRPPVMISGK 920
Query: 834 SLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLV 893
SLP F P A GF++ F TG+ P EFFFH M GREGL+DTAVKT+ +GYLQR L+
Sbjct: 921 SLPSFPIFEFAPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLI 980
Query: 894 KSLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
K LE L + YD+TVR++ V+QF YG DG+D
Sbjct: 981 KHLEGLTVGYDLTVRDSDKCVIQFLYGEDGMD 1012
Score = 84.6 bits (200), Expect = 1e-14
Identities = 42/75 (56%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 1021 QLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 1080
Q +F + K R + PG VG LAAQSIGEP TQMTL TFHFAG MN+T G+PR
Sbjct: 1155 QTKQFQNMLKLKAMRSLCAPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPR 1214
Query: 1081 VKEII-NASRNISTP 1094
++EI+ AS+NI TP
Sbjct: 1215 LREILMMASKNIKTP 1229
Score = 63.7 bits (148), Expect = 3e-08
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 50 PAPHGVLDRRMGT-NQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTI 108
P G+ D+ +G +K C TC L C GHFGYI+L LPV + ++R I TIL+
Sbjct: 50 PLSGGLYDKSLGPMTEKSEPCGTCRKNLYFCPGHFGYIELPLPVVNPIFYRMIGTILRMA 109
Query: 109 CKECAKVMLPESLKKS 124
C C + +PE +K S
Sbjct: 110 CLSCFRFQIPEHVKYS 125
>UniRef50_Q5KIF6 Cluster: DNA-directed RNA polymerase; n=1;
Filobasidiella neoformans|Rep: DNA-directed RNA
polymerase - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 1727
Score = 336 bits (827), Expect = 2e-90
Identities = 243/692 (35%), Positives = 356/692 (51%), Gaps = 80/692 (11%)
Query: 293 DVIARHLASAGKC-ELIQEDWDYLQLHAALYINSEMSGIPLAM-QPKKPGRGLVQRLKGK 350
D +A+ A G+ EL+ E LQ +++S + P M Q K P G+ Q L+ K
Sbjct: 454 DAVAK--AQGGRTFELLLEALIKLQHDVNSFVDSTKN--PAVMRQGKLPPPGVKQLLEKK 509
Query: 351 QGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLV 410
+G FR ++ GKRV++++R+VISPD N++ E+G+P AK LTYPE V N+ LR+LV
Sbjct: 510 EGLFRKHMMGKRVNYAARSVISPDINIETNEIGIPPVFAKKLTYPEPVTQQNVAELRQLV 569
Query: 411 CNGPDVHPGANYVQQR-GLKTK-KYLKYGNREKIAQEL-------------KCGDV---- 451
NGP +HPGA VQ G + L R +A +L G
Sbjct: 570 INGPKIHPGAALVQNEDGTQISLDKLTLDQRISLANQLLTPQGSEDNIGAASIGPAAKNK 629
Query: 452 -VERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQ-PQRTFRFNECVCTPYNADFDGDEMNM 509
V RH+ DGD+V+ NRQP+LHK S+MCHR KV ++T R + C YNADFDGDEMN+
Sbjct: 630 KVYRHIRDGDIVILNRQPTLHKPSMMCHRVKVLLGEKTIRMHYANCNSYNADFDGDEMNI 689
Query: 510 HLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYL 569
H PQ E ARAEA ++ + N + P +G L QD + G
Sbjct: 690 HFPQNEVARAEAQMIANTDN----------------QYLVPTSGGPLRGLIQDHVVAGVW 733
Query: 570 ITQRDTFFTKSEAQQLAACLLAGPD---ATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPN 626
+ + +FFT+ + QL L + RI PPAI KP+ LWTGKQI S I+
Sbjct: 734 MCNKSSFFTREQYFQLIYGALRTENNYTGRSRIITLPPAIFKPKPLWTGKQIMSTILTNL 793
Query: 627 RRCEVKA-NLETKGK------NYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSS 679
K NL ++ K + D + + VI + LVCG +DKS G+ +
Sbjct: 794 TPSNAKGLNLTSRNKVQNKLWRRDDSSDPAMSEENVIFLDGHLVCGVLDKSQYGA-SGYG 852
Query: 680 IFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYS 739
+ + + +G A R + L+R+ + Y+ + FS + D+ + + + +L+
Sbjct: 853 LVHSVHELYGPYIANRLLGVLSRLLTKYLQHDAFSCRMDDLILTAEGEKIRKDILDKASG 912
Query: 740 KCDGYILEME-----KGTLQCQPGCT------MEETL-EAVMLSELSSIRELAAKACFRE 787
DG I M+ +G+ P +EE L + +++ L ++ + A +
Sbjct: 913 --DGAIAAMKYVGLPEGSKIEDPDTAKNLAIRLEEILRDDHLMAGLDAVMQSAFNKTTSK 970
Query: 788 LH------------PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSL 835
++ P N +M SG+KGS +N SQ+ +GQQAL G+RVP ++L
Sbjct: 971 INNDVLPDHLVRPFPDNNMQMMTISGAKGSKVNASQISTLLGQQALEGRRVPTMVSGKTL 1030
Query: 836 PHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKS 895
P F+ A G+V N F TG+ P E++FH M GREGL+DTAVKT+ +GYLQR L+K
Sbjct: 1031 PSFKAFDTSARAGGYVANRFLTGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKH 1090
Query: 896 LEDLVLQYDMTVRNATGEVVQFRYGSDGLDPT 927
LE + + YD TVR++ V+QF YG D LD T
Sbjct: 1091 LEGVKVHYDHTVRDSDSSVLQFLYGEDSLDVT 1122
Score = 83.0 bits (196), Expect = 4e-14
Identities = 38/79 (48%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 1025 FLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEI 1084
FL + +Y R ++EPG AVG LA+Q +GEP TQMTL TFH AG + N+T G+PR++EI
Sbjct: 1228 FLGLARARYMRSLVEPGEAVGLLASQGVGEPSTQMTLNTFHLAGHGAANVTLGIPRLREI 1287
Query: 1085 I-NASRNISTPIITAELMQ 1102
+ AS +TP + L +
Sbjct: 1288 VMTASSKPTTPTMKLPLRE 1306
Score = 61.7 bits (143), Expect = 1e-07
Identities = 29/86 (33%), Positives = 42/86 (48%)
Query: 40 NLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFR 99
N L D +P G+ D ++G CETC L C GHFG+I+L PV+H +
Sbjct: 34 NPILLDNLNLPTRGGLYDPKLGPMGSRDLCETCHLSYFACPGHFGHIELPTPVYHPLFMN 93
Query: 100 AIITILQTICKECAKVMLPESLKKSY 125
+L+ +C C +PE + SY
Sbjct: 94 QCYHLLRGVCLYCHHFKMPEIVATSY 119
>UniRef50_A7J5B4 Cluster: RNA polymerase II largest subunit; n=61;
Ascomycota|Rep: RNA polymerase II largest subunit -
Ramalina complanata
Length = 1015
Score = 332 bits (815), Expect = 4e-89
Identities = 191/460 (41%), Positives = 270/460 (58%), Gaps = 34/460 (7%)
Query: 471 HKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNT 530
HK S+M HR +V P TFR N V +PYNADFDGDEMN+H+PQ+EE RAE
Sbjct: 387 HKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAE---------- 436
Query: 531 AVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLL 590
++ + V L N+V+P+ L+ QD + G Y + +RD F K + + LL
Sbjct: 437 -ISQLCMVPL-----NIVSPQRNAPLMGIVQDTLCGIYKLCRRDVFLGKEQVMNI---LL 487
Query: 591 AGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCV 650
PD I P PAI+KPR +WTGKQ+ SL++ ++GKN +
Sbjct: 488 WLPDWDGVI--PQPAILKPRPMWTGKQLISLVIPSGMAL-------SRGKN-----PCPL 533
Query: 651 QDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMN 710
+D ++I+ EL+ G + K+ +G+ + + + +++ + G E AV + +Y++++
Sbjct: 534 KDDGLLIQGGELMYGLLRKNIVGASS-NGLIHVIYNEKGWEAAVNFFNGAQTLVNYWLLH 592
Query: 711 RGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVML 770
GFS GI D P + IE + + + TL+ PG + ET E+ +
Sbjct: 593 NGFSIGIGDTIPDGETIEMIQGAVNAQKAVVTEITQMATANTLESLPGMNVRETFESKVS 652
Query: 771 SELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGF 830
L+ R+ A L N + M+ SGSKGS INISQM A VGQQ++ GKR+P GF
Sbjct: 653 KALTRARDDAGTKTTDSLKDHNNAIQMSLSGSKGSPINISQMTAVVGQQSVEGKRIPFGF 712
Query: 831 EDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQR 890
+ R+LPHF + +RGFVENS+ GLTPTEFFFH M GREGL+DTAVKTAETGY+QR
Sbjct: 713 KYRTLPHFTKDDYSAESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQR 772
Query: 891 RLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYME 930
RLVK+LED++ +YD TVRN+ G++VQF YG DGLD ++E
Sbjct: 773 RLVKALEDVMCKYDGTVRNSLGDIVQFVYGEDGLDGGHIE 812
Score = 109 bits (263), Expect = 3e-22
Identities = 79/254 (31%), Positives = 121/254 (47%), Gaps = 15/254 (5%)
Query: 79 CVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEMSYLL 138
C GHFG+I+L +PVFHVG+ I +L+T+C C KV++ ES F++ + Y
Sbjct: 1 CPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKVLVDES-----NPAFVD-ALRYRD 54
Query: 139 KKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKKVLMDF 198
K V + K C S + K H +P L
Sbjct: 55 AKRRFDAVWRLCKPKMICESNASTEEDAPSDEPKKPKHDHGGCGNIQPEIRREGLRLTGT 114
Query: 199 HEAKESNKEVAAMINSGLVKE---MSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILT 255
+A++ ++E N G E +SP LN+FR I ED+ +G++ +RPE +I+T
Sbjct: 115 WKAQKGDEE-----NEGQQPEKKPISPQMALNIFRHIATEDVKRMGLSTDYARPEWMIIT 169
Query: 256 RLPVPPLCIRPSVVSDIKAG-TNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDY 314
LPVPP +RPS+ D +G EDDLT K +I+ N + R ++ E
Sbjct: 170 VLPVPPPPVRPSIAVDGGSGLRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVSEFEQL 229
Query: 315 LQLHAALYINSEMS 328
LQ H A Y+++E++
Sbjct: 230 LQFHVATYMDNEIA 243
Score = 44.4 bits (100), Expect = 0.019
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMT 1060
++ R ++ PG VG LAAQSIGEP TQMT
Sbjct: 987 RFNRAIVSPGEMVGVLAAQSIGEPATQMT 1015
>UniRef50_A6SJ73 Cluster: DNA-directed RNA polymerase; n=2;
Sclerotiniaceae|Rep: DNA-directed RNA polymerase -
Botryotinia fuckeliana B05.10
Length = 1774
Score = 331 bits (813), Expect = 8e-89
Identities = 229/629 (36%), Positives = 330/629 (52%), Gaps = 57/629 (9%)
Query: 337 KKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPE 396
KK G+ Q+L+ K+G FR N+ GKRV+F++R+VISPDPN++ E+GVP AK LTYPE
Sbjct: 457 KKNEDGIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTYPE 516
Query: 397 RVFPANLQWLRRLVCNGPDVHPGANYVQQRG--LKTKKYLKYGNREKIAQELKCGDV--- 451
V N + +++ V NG D PGA ++ + + R +A +L
Sbjct: 517 PVTSHNFKEMQQAVINGVDKWPGAAAIENENGQVINLRSKTQDERMALANQLLASSSNGA 576
Query: 452 -------VERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFD 503
V RHL +GDVVL NRQP+LHK SIM HRA+V P ++T R + C YNADFD
Sbjct: 577 SGARNKKVYRHLTNGDVVLMNRQPTLHKPSIMGHRARVLPGEKTIRMHYANCNTYNADFD 636
Query: 504 GDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDF 563
GDEMNMH PQTE ARAEAL + ++ G+ L QD
Sbjct: 637 GDEMNMHFPQTEVARAEAL----------------QIADTDHQYLSATAGKPLRGLIQDH 680
Query: 564 ITGGYLITQRDTFFTKSEAQQLAA-CLL--AGPDATMRIDMPPPAIIKPRKLWTGKQIFS 620
I+ + +DT+F ++ QQL C+ +G RI PPAIIKP WTGKQ+ +
Sbjct: 681 ISVSVWMCNKDTYFDRATYQQLIYNCIRPESGHIVGERIVTVPPAIIKPVARWTGKQVIT 740
Query: 621 LIMRPNRRCEVKANLETKGKNYT--GNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKS 678
I++ A + GK T ++ V+ E + G +DK+ +G
Sbjct: 741 TILKNITPLNC-APISLTGKTQTPADRWGADSEEGVVLFNGGEFITGILDKAQIGPAG-G 798
Query: 679 SIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDV--TP-GKKL-IEAKNKLL 734
+ + + +G A + + L R+ + Y+ R F+ G+ D+ TP G++ IE +
Sbjct: 799 GLIHSVHEVYGPATAGKLLSILGRLLTKYLHMRAFTCGMDDLRLTPEGEQTRIETLSDAG 858
Query: 735 ESGYSKCDGYI-LEMEKGTLQCQPGCTMEET----------LEAVMLSELSSIRELAAKA 783
+ G Y+ LE +K T Q E L+A+M + + A
Sbjct: 859 KIGLEVAAKYVSLEDQKPTETDQELLNRLEDVMRDDSKQAGLDALMNARAGKLSTSITNA 918
Query: 784 CFRE----LHPTNAPLIMAQSGSKGSNINISQMIAC-VGQQALNGKRVPNGFEDRSLPHF 838
C + P N M SG+KGS +N + +I+C +GQQ L G+RVP +SLP F
Sbjct: 919 CLPQGLVKQFPHNQMQNMTVSGAKGSAVN-ANLISCNLGQQVLEGRRVPLMVSGKSLPCF 977
Query: 839 ERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLED 898
+ A G++ N F TG+ P E++FH M GREGL+DTAVKT+ +GYLQR L+K +E
Sbjct: 978 KPFDTHIRAGGYIVNRFLTGIRPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEG 1037
Query: 899 LVLQYDMTVRNATGEVVQFRYGSDGLDPT 927
L ++YD +VR++ G ++QF YG DGLD T
Sbjct: 1038 LKVEYDTSVRDSDGSMIQFIYGEDGLDVT 1066
Score = 55.2 bits (127), Expect = 1e-05
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 50 PAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTIC 109
P P G+ D +G D NC TC L C GH G+I L PV+H + ++ +L++ C
Sbjct: 44 PVPGGLYDPALGA-WGDNNCTTCNLSSFSCPGHAGHIDLPAPVYHPTFMDQVLRLLRSKC 102
Query: 110 KEC 112
K C
Sbjct: 103 KYC 105
>UniRef50_Q4QEN2 Cluster: DNA-directed RNA polymerase I largest
subunit, putative; n=3; Leishmania|Rep: DNA-directed RNA
polymerase I largest subunit, putative - Leishmania major
Length = 1809
Score = 327 bits (803), Expect = 1e-87
Identities = 269/842 (31%), Positives = 409/842 (48%), Gaps = 112/842 (13%)
Query: 350 KQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVF---PANLQWL 406
K+G FR ++ GKRV+ + R+VISPD ++ EV +P A+ LT+PE V PA + +L
Sbjct: 493 KEGLFRMHMMGKRVNQACRSVISPDYLVEPNEVLLPRPFARALTFPELVSSYSPARMMFL 552
Query: 407 RRLVCNGPDVHPGANYVQ---QRG------LKTKKYLKYGNREKIAQELKCGDV-VERHL 456
+R V NGPDV+PGA +++ G L + ++ + K + G + V RH+
Sbjct: 553 KRCVMNGPDVYPGATHLEIGLPSGETRFVDLHVPELIRRQHAMKYFAMAQNGSLTVHRHI 612
Query: 457 VDGDVVLFNRQPSLHKLSIMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTE 515
+DGD ++FNRQP+LHK+S+M +RAKV +T RF+ + YNADFDGDEMN+H+ Q+
Sbjct: 613 LDGDHLIFNRQPTLHKVSMMAYRAKVLSGLKTLRFHYVNGSSYNADFDGDEMNIHVVQSL 672
Query: 516 EARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDT 575
EA+AE LM ++ N + P +G+ + QD + G L+T RD
Sbjct: 673 EAKAELECLMDAN----------------LNYLVPTSGKPIRGFIQDHVVAGVLLTLRDN 716
Query: 576 FFTKSEAQQLAACLLA----------GPDATMRIDMPPPAIIKPRKLWTGKQIFSLIM-- 623
F Q +A AT+ +P PA++KPR LWTGKQ+ S+I+
Sbjct: 717 FLPHHTFVQFVYNGIAPYMQKQGKPLSALATLTELIPVPAVLKPRPLWTGKQLISVIVHY 776
Query: 624 ------------RPNR-----RCEVKANLETKGKNYTGN----KDLCVQDSYVIIRNSEL 662
R N ++ + T +TG C++D +V SEL
Sbjct: 777 VTGVVESRGGAPRSNGVSMHGTSLIQPSTYTTTDPHTGELVTASRKCMEDDHVQFFESEL 836
Query: 663 VCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTP 722
+ G + K+ LGS + S+ +++ +G L R+ S + GFS G+ D+
Sbjct: 837 ITGILCKNQLGS-SNLSVVHVIHEIYGPHMVGELFGALGRVLSMSLQREGFSIGMDDMIL 895
Query: 723 GKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAK 782
++ E + LL E++ L E + V++ +S+++
Sbjct: 896 LQE--ERRTALLR-----------ELDSAPLNLPDD---EARVMPVIMGMATSLQKEFVP 939
Query: 783 ACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHS 842
P N L M SG+KGSN N QM +GQQ +G+RV ++LP F
Sbjct: 940 GRMLRPFPHNQLLTMTMSGAKGSNTNAIQMSLGLGQQLFDGRRVKRMNSGKTLPPFFVAE 999
Query: 843 KIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
K + G+ F +G+ P E+ FH M GR+GL+DTAVKT+ +G+LQR LVK LE LV+Q
Sbjct: 1000 KRARSLGYAIGRFTSGIRPAEYTFHAMAGRDGLIDTAVKTSRSGHLQRCLVKGLESLVVQ 1059
Query: 903 YDMTVRNATGEVVQFRYGSDGLDPTYMEG-------KDRPVDLARVL----ADVRAKCQD 951
+D +VR+A G V+QF YG DGLDP KD +DL R + V +
Sbjct: 1060 WDHSVRDANGSVIQFLYGGDGLDPMRTSSLQAWEVVKDNCIDLGRKMNVNTGVVTGEEAA 1119
Query: 952 KNAEPLDGDGIVLAAEETL----ALDDFKTSTDEFKNELLSFLKATAGRVRALRARY--- 1004
+ A + G A E A + ++ L + KA+ G +A+Y
Sbjct: 1120 EEAASRNSQGKRERAHEAAAAMRAAQRALLEAEAQRDPLPAHCKASLGTYLETKAQYPLF 1179
Query: 1005 AGCGRAALQLERLTLTQLVRFLRVCHHKYQRGVI-------------EPGTAVGALAAQS 1051
+ A ++ L + +R R +Y R V+ + G VG LAAQ+
Sbjct: 1180 KKVSQVARWVKNGVLNEKLREKREESIRYYRDVMTELTTRRRVRAYCDAGEPVGLLAAQA 1239
Query: 1052 IGEPGTQMTLKTFHFAGVASMNITQGVPRVKE-IINASRNISTPIITAELMQPYDQEFAR 1110
GEP TQMTL TFH AG ++T+G+PR++E +I AS ++ E D+E
Sbjct: 1240 AGEPSTQMTLNTFHSAGSTVTHVTEGIPRLRELLIYASVQKVAIVVPVEKATEVDEEAIS 1299
Query: 1111 RV 1112
R+
Sbjct: 1300 RI 1301
>UniRef50_Q9SVY0 Cluster: DNA-directed RNA polymerase I 190K
chain-like protein; n=1; Arabidopsis thaliana|Rep:
DNA-directed RNA polymerase I 190K chain-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1670
Score = 322 bits (791), Expect = 4e-86
Identities = 255/818 (31%), Positives = 388/818 (47%), Gaps = 121/818 (14%)
Query: 200 EAKESNKEVAAMINSGLVK-EMSPLEVLNLFRRIPDEDIPLLGMNVKL--SRPEDL---- 252
E +E + EVAA K ++ P EV N+ + + + L S E +
Sbjct: 281 ETREKSTEVAAEFEEHNSKRDLLPSEVRNILKHLWQNEHEFCSFIGDLWQSGSEKIDYSM 340
Query: 253 -ILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQED 311
L + VPP RP E T+ ++++ N+++ + +
Sbjct: 341 FFLESVLVPPTKFRPPTTGG--DSVMEHPQTVGLNKVIESNNILGNACTNKLDQSKVIFR 398
Query: 312 WDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVI 371
W LQ + +S+ + + Q ++ G+ Q L+ K+G FR + GKRV+ + R+VI
Sbjct: 399 WRNLQESVNVLFDSKTATV----QSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVI 454
Query: 372 SPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTK 431
SPDP + + ++G+P A LTYPERV P N++ LR + NGPD+HPGA + + K
Sbjct: 455 SPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMK 514
Query: 432 KYLKYGNREKIAQEL------------KC-----GDVVERHLVDGDVVLFNRQPSLHKLS 474
R IA++L C G V RH+ DGD+VL NRQP+LHK S
Sbjct: 515 LPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPS 574
Query: 475 IMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVT 533
+M H+ +V + ++T R + C+ YNADFDGDEMN+H PQ E +RAEA ++ ++N
Sbjct: 575 LMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANN---- 630
Query: 534 VIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLA------- 586
P NGE L A QD I L+T+RDTF K QL
Sbjct: 631 ------------QYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTD 678
Query: 587 ------------ACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRR------ 628
+++ DA + PAI+KP LWTGKQ+ + ++ +
Sbjct: 679 MVLSTFSGRSGKKVMVSASDAELLT--VTPAILKPVPLWTGKQVITAVLNQITKGHPPFT 736
Query: 629 -------------C---EVKANLE--TKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKS 670
C EVK N TK K + + + + IR +E VCG +DK+
Sbjct: 737 VEKATKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKA 796
Query: 671 TLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAK 730
+ + + +G A + +R+ + ++ GF+ G+ D+ K + E +
Sbjct: 797 QFAD---YGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEER 853
Query: 731 NKLLESGYSKCDGYILEMEKGT---LQCQPGCTMEETLEAVML----SELSSI------- 776
K L+ +L G +Q P M +E ++ S L+S+
Sbjct: 854 TKQLQE-CENVGERVLRKTFGIDVDVQIDPQ-DMRSRIERILYEDGESALASLDRSIVNY 911
Query: 777 -RELAAKACFRELHPT--------NAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVP 827
+ ++K +L N +M SG+KGS +N Q+ + +GQQ L GKRVP
Sbjct: 912 LNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVP 971
Query: 828 NGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGY 887
++LP F P A GF+ + F +GL P E++FH M GREGLVDTAVKT+ +GY
Sbjct: 972 RMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1031
Query: 888 LQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
LQR L+K+LE L + YD TVR+A G ++QF+YG DG+D
Sbjct: 1032 LQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVD 1069
Score = 89.8 bits (213), Expect = 4e-16
Identities = 43/92 (46%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 1026 LRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEII 1085
L++ K+ + +PG VG LAAQS+GEP TQMTL TFH AG MN+T G+PR++EI+
Sbjct: 1140 LKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1199
Query: 1086 -NASRNISTPIITAELMQPYDQEFARRVKGRI 1116
A+ NI TPI+T L++ +E A + R+
Sbjct: 1200 MTAAANIKTPIMTCPLLKGKTKEDANDITDRL 1231
Score = 58.8 bits (136), Expect = 8e-07
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 15 ISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGL 74
+ V F+ + +++ + ++V + L D P P G+ D ++G C +CG
Sbjct: 27 VESVRFSFMTEQDVRKHSFLKVTSP--ILHDNVGNPFPGGLYDLKLGPKDDKQACNSCGQ 84
Query: 75 GLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVML-PESLKKSYRRKFINPE 133
C GH G+I+L P++H F + LQ C C M PE ++++ + + +
Sbjct: 85 LKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLKLIIK 144
Query: 134 MSYLLKKNLKAVVHKKAKTFSKCPSCEAI 162
+ K L++ K+K S SCE++
Sbjct: 145 GDIVSAKQLESNTPTKSK--SSDESCESV 171
>UniRef50_A5BD07 Cluster: DNA-directed RNA polymerase; n=1; Vitis
vinifera|Rep: DNA-directed RNA polymerase - Vitis
vinifera (Grape)
Length = 1350
Score = 316 bits (775), Expect = 3e-84
Identities = 250/770 (32%), Positives = 380/770 (49%), Gaps = 124/770 (16%)
Query: 254 LTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWD 313
L + VPP+ RP I E T+ ++L N + A+ + I W
Sbjct: 457 LETILVPPIKFRPPSKGQISV--MEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWM 514
Query: 314 YLQLHAALYINSEMSGIPLAMQPKKP-GRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVIS 372
LQ IN G A Q ++ G G+ Q L+ K+G FR + GKRV+F+ R+VIS
Sbjct: 515 DLQQS----INVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVIS 570
Query: 373 PDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGA-NYVQQRG---L 428
PDP L + E+G+P + A LTYPE+V P N+ LR + NGP++HPGA +YV + L
Sbjct: 571 PDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKL 630
Query: 429 KTKKYLKYG-------NREKIAQELKCGD------VVERHLVDGDVVLFNRQPSLHKLSI 475
K ++ +R +AQ + D +V RHL DGD+VL NRQP+LHK SI
Sbjct: 631 AVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSI 690
Query: 476 MCHRAKV-QPQRTFRFNECVC------------------TPYNADFDGDEMNMHLPQTEE 516
M H +V + ++T R + C + YNADFDGDEMN+H PQ E
Sbjct: 691 MAHVVRVLKGEKTLRMHYANCRVESEHISMLDLDDCSDSSTYNADFDGDEMNVHFPQDEI 750
Query: 517 ARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTF 576
+RAEA ++ ++N + P G+ + QD I L+T++DTF
Sbjct: 751 SRAEAYNIVNANN----------------QYIVPSRGDPIRGLIQDHIVSAVLLTKKDTF 794
Query: 577 FTKSEAQQL---------AACLLAGPDATMRI-----DMPP--PAIIKPRKLWTGKQIFS 620
T+ + QL + + P + + +M P PAI KP LW+GKQ+ +
Sbjct: 795 LTREQYNQLLYSSGLSSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVIT 854
Query: 621 LIMRPNRRCEVKANLETKGK---NYTGN------------------KDLCVQDSY----V 655
++ R E GK Y G+ K+ ++ + +
Sbjct: 855 AVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKL 914
Query: 656 IIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSF 715
+I +ELV G +DK+ K + +++ +G A + L+R+ + ++ GF+
Sbjct: 915 LIHKNELVRGVIDKAQFD---KYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTC 971
Query: 716 GIID--VTPGK------KLIEAKN-------KLLESGYSKCDGYILEMEKGTLQCQPGCT 760
G+ D ++P +L +++N K + S + K D L++E + G
Sbjct: 972 GVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEA 1031
Query: 761 MEETLEAVMLSELSSI-----RELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIAC 815
L+ +M +EL+ + ++L K + P N +M +G+KGS +N SQ+ +
Sbjct: 1032 AITRLDRMMKNELNELTSKVNKDLLLKGLVKPF-PKNCLSLMTTTGAKGSTVNFSQISSF 1090
Query: 816 VGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGL 875
+GQQ L GKRVP ++LP F A GF+ + F TGL P E++FH M GREGL
Sbjct: 1091 LGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGL 1150
Query: 876 VDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
VDTAVKT+ +GYLQR L+K+LE L + YD TVR++ G +VQF YG DG+D
Sbjct: 1151 VDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVD 1200
Score = 84.6 bits (200), Expect = 1e-14
Identities = 39/77 (50%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 1025 FLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEI 1084
F+ + KY + +PG VG LAAQS+GEP TQMTL TFH AG +N+T G+PR++EI
Sbjct: 1268 FVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEI 1327
Query: 1085 I-NASRNISTPIITAEL 1100
+ A+ +I TPI+T L
Sbjct: 1328 LMTAANDIKTPIMTCPL 1344
>UniRef50_UPI00004998AA Cluster: DNA-directed RNA polymerase I
largest subunit; n=4; Entamoeba histolytica
HM-1:IMSS|Rep: DNA-directed RNA polymerase I largest
subunit - Entamoeba histolytica HM-1:IMSS
Length = 1522
Score = 301 bits (740), Expect = 5e-80
Identities = 213/621 (34%), Positives = 328/621 (52%), Gaps = 96/621 (15%)
Query: 347 LKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWL 406
L+ K+G FR N+ GKRV++++RTVISPDP L +G+P+ A LT V N + +
Sbjct: 399 LEHKKGLFRNNMMGKRVNYAARTVISPDPFLPTNTIGMPLPFAMRLTIAVPVNERNYEEM 458
Query: 407 RRLVCNGPDVHPGANYVQQR-GLKT---------KKYLKYGNREKIA----QELKCGDVV 452
++ V NGP V PGA Y++ G K K + G E++ + + V
Sbjct: 459 KQAVINGPQVWPGALYIENEWGHKIVLLDDSNPYNKTKRQGEAERLLVIDPKAPRSFKTV 518
Query: 453 ERHLVDGDVVLFNRQPSLHKLSIMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEMNMHL 511
RH++D D+VL NRQP+LHK IM H KV + ++T R + C +NADFDGDEMN+HL
Sbjct: 519 FRHVIDNDMVLSNRQPTLHKPGIMGHYVKVLKIEKTIRMHYANCNTFNADFDGDEMNLHL 578
Query: 512 PQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLIT 571
PQ+ EAR+E + I +S EQ V P+NG+ L QD + +++T
Sbjct: 579 PQSMEARSEVMN------------IALSDEQ----YVVPKNGQPLRGLIQDHVISSFMLT 622
Query: 572 QRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRP------ 625
+RDTFFTK E +I+KP WTGKQ+ + I+
Sbjct: 623 KRDTFFTKEEY----------------------SILKPIPKWTGKQVVTAILMHISTNHC 660
Query: 626 ----NRRCEVKANLETKGKNYTGN-------KDLCVQ------DSYVIIRNSELVCGSMD 668
+C+V N +G T KD + DS II++S+++ G++D
Sbjct: 661 TINFEGKCKVSTNEINRGGYQTKKERKLMKQKDEFTEKWSGANDSLCIIKDSQMLTGTLD 720
Query: 669 KSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIE 728
K+ +G+ +S I + + + + + + L+R+ + Y+ G + +
Sbjct: 721 KNQIGASNQSLI-HAIYELYNGKVSGMCLTLLSRLLTTYLQRIGHT---------SRTAI 770
Query: 729 AKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKAC--FR 786
AK+ LE G+SK D +++ + +P + E L+ + +E++ K C +
Sbjct: 771 AKHFKLE-GHSKYD---IDLALANARRRPQLSKE--LDDAVKTEVNECTSNVIKECIPYG 824
Query: 787 ELH--PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKI 844
+L P N+ +M +G+KGS +N SQ+ +GQQ L G+RVP ++LP F R+
Sbjct: 825 QLRAFPWNSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGKTLPSFPRYDTS 884
Query: 845 PAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYD 904
A GF+ + F TG+ P EFFFH M GREGL+DTAVKTA +GYLQR ++K LE L ++YD
Sbjct: 885 ARAGGFIASRFLTGVPPQEFFFHCMAGREGLIDTAVKTASSGYLQRCVIKMLESLHVEYD 944
Query: 905 MTVRNATGEVVQFRYGSDGLD 925
+VR + G +++F YG DG+D
Sbjct: 945 YSVRESDGSIIEFMYGDDGID 965
Score = 83.4 bits (197), Expect = 3e-14
Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-ASRN 1090
KY + +I PG VG LA QSIGEP TQMTL TFH AG +N+T G+PR+KE++ A +
Sbjct: 1072 KYNKSLINPGEPVGVLAGQSIGEPSTQMTLNTFHLAGRGDVNVTLGMPRIKELVMFAKKE 1131
Query: 1091 ISTPIITAELMQPYDQEFARRVK 1113
I+TP + L +P + + K
Sbjct: 1132 IATPSMILYLKEPNQKNTEKLAK 1154
Score = 48.8 bits (111), Expect = 9e-04
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 54 GVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKEC 112
G+ D +G K+ C TCGL C GHFG+ +L P++ ++ +L++IC +C
Sbjct: 54 GLYDPALGVFGKNTICPTCGLTEEGCPGHFGHFELEEPMYQPLLLTELLKLLRSICMKC 112
>UniRef50_A7S9W9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1242
Score = 301 bits (739), Expect = 7e-80
Identities = 211/587 (35%), Positives = 303/587 (51%), Gaps = 70/587 (11%)
Query: 389 AKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR-GLKTK-KYLKYGNREKIAQEL 446
AK LTYP+ V N++ LR+ V NGP VHPGA V+ G K + R+ IA+ L
Sbjct: 4 AKKLTYPQPVTTWNVKELRQAVINGPLVHPGAILVESEDGKKIRLSETDVNQRQAIAKRL 63
Query: 447 --KCGD---------VVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECV 494
GD V RH+ +GDV+L NRQP+LH+ SIM H+ +V P ++T R +
Sbjct: 64 LTPSGDNKGSHVNCKKVYRHIQNGDVMLLNRQPTLHRPSIMAHKVRVLPSEKTIRLHYAN 123
Query: 495 CTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGE 554
C YNADFDGDEMN H PQ E ARAEA + ++ N + P++G
Sbjct: 124 CKAYNADFDGDEMNAHFPQNELARAEAYTIASTN----------------FNYLVPKDGT 167
Query: 555 LLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWT 614
L QD + G L+T R F K + QQL L + + + MP I+KP + W+
Sbjct: 168 PLSGLIQDHMVSGVLMTIRGRMFNKLDYQQLVYGALNFKNQPIELLMP--CILKPTQFWS 225
Query: 615 GKQIFS-----LIMRPNRRCEVKANLETKGKNYTGNK------DLCV------QDSYVII 657
GKQ+ S LI ++R +K + KN+ K DL V +S V+I
Sbjct: 226 GKQVISTILLNLIPLGSKRLNLKGKAKISAKNWNTRKPRRQFLDLEVLKGDDMSESEVVI 285
Query: 658 RNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGI 717
R+ L+CG +DK+ G+ T + + +G + + LAR+ + ++ GF+ G+
Sbjct: 286 RDGHLLCGVLDKAHYGN-TPYGLVHCCNELYGGVMSGELLSALARVFTSFLQFHGFTLGV 344
Query: 718 IDVTPGKKLIEAKNKLLESGY-------SKCDGYILEMEKGTLQCQ--------PGCTME 762
D+ ++ + + KL+ G + G + + L+ + G M+
Sbjct: 345 KDILVTERADKIRRKLIAKGRVSGKDAATSAFGMPEDCHRSDLEARMQRAHHNSDGTDMK 404
Query: 763 ETLEAVMLSELSSIRELAAKACFR----ELHPTNAPLIMAQSGSKGSNINISQMIACVGQ 818
E L+ M + ++ KAC + P N +M QSG+KGS +N Q+ +GQ
Sbjct: 405 E-LDLCMKKKTDHYQDSINKACLPLGLYQRFPGNNLQLMVQSGAKGSAVNCMQISCLLGQ 463
Query: 819 QALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDT 878
L G+R P RSLP F + P A GFV+ F TG+ P E+FFH M GREGLVDT
Sbjct: 464 IELEGRRPPIMLSGRSLPSFLPYDTSPRAGGFVDGRFLTGIRPQEYFFHCMAGREGLVDT 523
Query: 879 AVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
AVKT+ +GYLQR L+K LE L + YD+TVR++ G +VQF YG DGLD
Sbjct: 524 AVKTSRSGYLQRCLIKHLEGLQVAYDLTVRDSDGSIVQFYYGEDGLD 570
Score = 89.8 bits (213), Expect = 4e-16
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 1024 RFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKE 1083
+F + + K R +++PG AVG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++E
Sbjct: 741 KFRSLMYLKTLRSLVDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRMRE 800
Query: 1084 II-NASRNISTPIITAELM 1101
I+ AS NI TP + L+
Sbjct: 801 ILMTASANIKTPTMDMPLL 819
>UniRef50_Q58445 Cluster: DNA-directed RNA polymerase subunit A' (EC
2.7.7.6) [Contains: Mja rpoA1 intein (Mja rpol A'
intein)]; n=2; Euryarchaeota|Rep: DNA-directed RNA
polymerase subunit A' (EC 2.7.7.6) [Contains: Mja rpoA1
intein (Mja rpol A' intein)] - Methanococcus jannaschii
Length = 1341
Score = 299 bits (734), Expect = 3e-79
Identities = 172/454 (37%), Positives = 270/454 (59%), Gaps = 27/454 (5%)
Query: 495 CTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGE 554
C PYNADFDGDEMN+H+PQ+EEARAEA LM ++ + ++++PR G
Sbjct: 912 CPPYNADFDGDEMNLHVPQSEEARAEAEALM---------LV-------EKHILSPRFGG 955
Query: 555 LLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWT 614
+I A DFI+G YL+T +FTK EA + L +G + P + L++
Sbjct: 956 PIIGAIHDFISGAYLLTSN--YFTKDEATLI---LRSGGIKDELWE--PDKVENGVPLYS 1008
Query: 615 GKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGS 674
GK+IFS + KA + K K+ C D+YV+I++ EL+ G +DK+ G+
Sbjct: 1009 GKKIFSKALPKGLNLRYKAKICRKCD--VCKKEECEYDAYVVIKDGELIKGVIDKNGYGA 1066
Query: 675 GTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLL 734
I + +++++G E + + +MA +M RGF+ GI D ++ ++ K+L
Sbjct: 1067 EA-GLILHTIVKEFGPEAGRKFLDSATKMAIRAVMLRGFTTGIDDEDLPEEALKEIEKVL 1125
Query: 735 ESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAP 794
+ K I + E+G L+ PG +EE+ EA + + L R+ A R L N
Sbjct: 1126 DEAEEKVKEIIEKYERGELELLPGLNLEESREAYISNVLREARDKAGAIAERYLGLDNHA 1185
Query: 795 LIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENS 854
+IMA +G++G+ +N++QM AC+GQQ++ GKR+ G+ R LPHFE+ + GFV +S
Sbjct: 1186 VIMAVTGARGNILNLTQMAACLGQQSVRGKRIFRGYRGRVLPHFEKGDLGARSHGFVRSS 1245
Query: 855 FYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEV 914
+ GL+PTEFFFH MGGREGLVD AV+TA++GY+QRRL+ +L+DL ++D TVR++ G +
Sbjct: 1246 YKKGLSPTEFFFHAMGGREGLVDQAVRTAQSGYMQRRLINALQDLKTEFDGTVRDSRGIM 1305
Query: 915 VQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAK 948
+QF+YG DG+DP + + + V++ R++ V+ K
Sbjct: 1306 IQFKYGEDGIDP-MLADRGKAVNIDRIIDKVKMK 1338
Score = 270 bits (663), Expect = 1e-70
Identities = 137/286 (47%), Positives = 194/286 (67%), Gaps = 9/286 (3%)
Query: 218 KEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTN 277
K ++P +V + +IPDED LLG+N +++RPE ++LT LPVPP+ +RPS+ + +
Sbjct: 176 KTLTPSDVREILEKIPDEDCILLGLNPEVARPEWMVLTVLPVPPVTVRPSITLET-GERS 234
Query: 278 EDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK 337
EDDLT K +I+ IN+ + ++ +I++ W+ LQ H Y ++E GIP A
Sbjct: 235 EDDLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHVNTYFDNEAPGIPPAKHRS 294
Query: 338 -KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPE 396
+P + L QRLKGK+GRFR NL+GKRV+FSSRTVISPDP L I EVGVP VAK LT PE
Sbjct: 295 GRPLKTLAQRLKGKEGRFRYNLAGKRVNFSSRTVISPDPCLSINEVGVPEVVAKELTVPE 354
Query: 397 RVFPANLQWLRRLVCNGPDVHPGANYVQQRGL-------KTKKYLKYGNREKIAQELKCG 449
+V N++ +R+L+ NG + HPG NYV ++ + + K + N++ A+ ++ G
Sbjct: 355 KVTKYNIERIRQLLRNGSEKHPGVNYVIRKMIGRDGTEQEYKVKITESNKDFWAENIREG 414
Query: 450 DVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVC 495
D+VERHL+DGD+VL+NRQPSLH++SIM HR +V P RTFR N CVC
Sbjct: 415 DIVERHLMDGDIVLYNRQPSLHRMSIMAHRVRVLPYRTFRHNLCVC 460
Score = 100 bits (239), Expect = 3e-19
Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
+ ++I + F + SP I+Q + +++T + + +DG P G++D R+G C+
Sbjct: 6 IPKEIGEIMFGLLSPDYIRQMSVAKIVTPDTYDEDGY--PIDGGLMDTRLGVIDPGLVCK 63
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFI 130
TCG + EC GHFG+I+L PV H+G+ + I IL+ +C C +V + E+ +K K
Sbjct: 64 TCGGRIGECPGHFGHIELAKPVIHIGFAKTIYKILKAVCPHCGRVAISETKRKEILEKME 123
Query: 131 NPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVK 167
E K + V+K+A + CP C I +K
Sbjct: 124 KLERDGGNKWEVCEEVYKEASKVTICPHCGEIKYDIK 160
>UniRef50_A5K7P4 Cluster: DNA-directed RNA polymerase; n=13;
Eukaryota|Rep: DNA-directed RNA polymerase - Plasmodium
vivax
Length = 2379
Score = 298 bits (732), Expect = 5e-79
Identities = 175/408 (42%), Positives = 244/408 (59%), Gaps = 26/408 (6%)
Query: 218 KEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTN 277
+++S E L++ ++I E++P+LG N P LILT +P+PP C RP V + +
Sbjct: 236 RKLSAEEALDILKKIRKEEMPILGFNSDRCIPASLILTFIPIPPPCARPYVQYGNQR--S 293
Query: 278 EDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAM-QP 336
EDDLT+K +I+ N + R K ++Q+ LQ H ++++ G+P+A +
Sbjct: 294 EDDLTLKLLDIVKTNIQLKRQTDRGAKSHVLQDLCALLQFHITTLFDNDIPGMPIATTRS 353
Query: 337 KKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPE 396
KKP + + RLKGK+GR RGNL GKRVDFS+RTVI+ DPNL I +GVP VA LT+ E
Sbjct: 354 KKPIKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCE 413
Query: 397 RVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHL 456
V P N L++LV GP PGA Y+ R TK L++ R+ +EL+ G VERH+
Sbjct: 414 TVTPLNYDDLKKLVERGPYEWPGAKYII-RDNGTKYDLRHV-RKNSERELEYGYKVERHM 471
Query: 457 VDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEE 516
D D +LFNRQPSLHK+SIM H+AK+ P TFR N V +PYNADFDGDEMN+HL Q+ E
Sbjct: 472 TDEDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLAVTSPYNADFDGDEMNLHLAQSHE 531
Query: 517 ARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTF 576
R+E LM I++ +V+P+ + ++ QD + T+RD F
Sbjct: 532 TRSEIKHLM---------IVQ-------KQIVSPQGNKPVMGIVQDSLLAIRKFTRRDNF 575
Query: 577 FTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMR 624
TK E L L+ P I P PAI+KP+ LWTGKQIFS++++
Sbjct: 576 LTKEEVMSL---LIWIPYWNHVI--PTPAIMKPKALWTGKQIFSMLLQ 618
Score = 259 bits (635), Expect = 3e-67
Identities = 126/292 (43%), Positives = 189/292 (64%), Gaps = 3/292 (1%)
Query: 650 VQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMM 709
V D VII+N+EL+CG + K T+GS + S+ +IL + G + + L ++ + ++
Sbjct: 727 VNDGKVIIKNNELLCGIICKRTVGSSS-GSLIHILWHEMGPDKTKDFISALQKVTNNWLE 785
Query: 710 NRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVM 769
GF+ D+ K+++ +L + + + ++G L+CQPG ++ E+ E +
Sbjct: 786 YIGFTVSCSDIIASNKVLDKVKDILSKSKKEVSKIVKKAQRGELECQPGKSLYESFETRV 845
Query: 770 LSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNG 829
+EL+ RE+A K L N M SGSKGS INISQ+I+CVGQQ + GKR+P G
Sbjct: 846 NNELNCAREMAGKVASESLDERNNIFSMVASGSKGSIINISQIISCVGQQNVEGKRIPFG 905
Query: 830 FEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQ 889
F RSLPHF + P +RGFV NS+ +GLTP E FFH MGGREG++DTA KT+ETGY+Q
Sbjct: 906 FNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQ 965
Query: 890 RRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARV 941
RRL+K++ED+++QYD TVRN+ G+++QF YG DG+ Y+E D+ +DL ++
Sbjct: 966 RRLIKAMEDVMVQYDRTVRNSYGDIIQFLYGEDGMAGEYIE--DQIIDLMKL 1015
Score = 95.5 bits (227), Expect = 8e-18
Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 2/112 (1%)
Query: 1013 QLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASM 1072
Q ++++ + L+ + + + PG VGALAAQSIGEP TQMTL TFHFAGV S
Sbjct: 1311 QTHKISMKGIDWLLQEIEKNFYKSLCHPGECVGALAAQSIGEPATQMTLNTFHFAGVGSK 1370
Query: 1073 NITQGVPRVKEIINASRNISTPIITAEL--MQPYDQEFARRVKGRICTSKLK 1122
N+T GVPR+KE+IN +N+ TP T L + DQ+ A+ + ++ + LK
Sbjct: 1371 NVTLGVPRLKELINIVKNVKTPSTTIYLDDVVSNDQQKAKDILTKLEYTTLK 1422
Score = 76.2 bits (179), Expect = 5e-12
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
+++ + V P +I++ E++ +L+ +DG +P G+ D RMGT C TC
Sbjct: 15 KRVKRLELGVLDPEIIKKIGVCEIVNVDLY-KDG--LPREGGLNDIRMGTIDYKTLCGTC 71
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKK 123
+ + C GHFGYI+L P++H G+ ++ +L+ +C C +++ S K
Sbjct: 72 NMNVKYCPGHFGYIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNTSNSK 122
>UniRef50_P14248 Cluster: DNA-directed RNA polymerase II subunit
RPB1; n=3; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Plasmodium falciparum (isolate CDC /
Honduras)
Length = 2452
Score = 298 bits (731), Expect = 7e-79
Identities = 176/408 (43%), Positives = 241/408 (59%), Gaps = 26/408 (6%)
Query: 218 KEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTN 277
+++S E L + ++I E++ +LG N P LILT +P+PP C RP V + +
Sbjct: 234 RKLSAEEALEILKKIRKEEMSILGFNSDRCVPASLILTCIPIPPPCARPYVQYGNQR--S 291
Query: 278 EDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAM-QP 336
EDDLT+K +I+ N + R K ++Q+ LQ H ++++ G+P+A +
Sbjct: 292 EDDLTLKLLDIVKTNIQLKRQTDRGAKSHVLQDLCSLLQFHITTLFDNDIPGMPIATTRS 351
Query: 337 KKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPE 396
KKP + + RLKGK+GR RGNL GKRVDFS+RTVI+ DPNL I +GVP VA LT+ E
Sbjct: 352 KKPIKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCE 411
Query: 397 RVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHL 456
V P N L++LV GP PGA Y+ R TK L++ R +EL+ G VERH+
Sbjct: 412 TVTPLNYDNLKKLVERGPYEWPGAKYII-RDNGTKYDLRHVRRNS-EKELEYGYKVERHM 469
Query: 457 VDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEE 516
D D +LFNRQPSLHK+SIM H+AK+ P TFR N V +PYNADFDGDEMN+HL Q+ E
Sbjct: 470 TDEDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSHE 529
Query: 517 ARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTF 576
R+E LM ++ R +V+P+ + ++ QD + T+RD F
Sbjct: 530 TRSEIKHLM--------IVQR--------QIVSPQGNKPVMGIVQDSLLAIRKFTRRDNF 573
Query: 577 FTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMR 624
TK E L L+ P I P PAIIKPR LWTGKQIFS++++
Sbjct: 574 LTKEEVMSL---LIWIPYWNHVI--PTPAIIKPRALWTGKQIFSMLLQ 616
Score = 258 bits (633), Expect = 5e-67
Identities = 130/313 (41%), Positives = 198/313 (63%), Gaps = 5/313 (1%)
Query: 631 VKANL--ETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDW 688
VK NL ++ + N + D VII+N+EL+ G + K T+GS + S+ ++L +
Sbjct: 739 VKINLMRDSSTSSKDDNPYCSINDGKVIIKNNELLSGIICKRTVGSSS-GSLIHVLWHEM 797
Query: 689 GEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEM 748
G + + L ++ + ++ GF+ D+ K++ ++L+ S+ + +
Sbjct: 798 GPDKTKDFLSALQKVTNNWLEYVGFTVSCSDIIASNKVLGKVREILDKSKSEVSKLVEKA 857
Query: 749 EKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNIN 808
+KG L+CQPG ++ E+ E + +EL+ RE+A K L N M SGSKGS IN
Sbjct: 858 QKGELECQPGKSLYESFETRVNNELNCAREMAGKVASESLDERNNIFSMVASGSKGSIIN 917
Query: 809 ISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHT 868
ISQ+I+CVGQQ + GKR+P GF RSLPHF + P +RGFV NS+ +GLTP E FFH
Sbjct: 918 ISQIISCVGQQNVEGKRIPFGFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHA 977
Query: 869 MGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTY 928
MGGREG++DTA KT+ETGY+QRRL+K++ED+++QYD TVRN+ G+++QF YG DG+ Y
Sbjct: 978 MGGREGIIDTACKTSETGYIQRRLIKAMEDVMVQYDRTVRNSYGDIIQFLYGEDGMAGEY 1037
Query: 929 MEGKDRPVDLARV 941
+E D+ +DL ++
Sbjct: 1038 IE--DQIIDLMKL 1048
Score = 95.9 bits (228), Expect = 6e-18
Identities = 51/112 (45%), Positives = 70/112 (62%), Gaps = 2/112 (1%)
Query: 1013 QLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASM 1072
Q ++++ L L+ + + + PG VGALAAQSIGEP TQMTL TFHFAGV S
Sbjct: 1374 QTHKVSVKGLDWLLQEIEKIFYKSLCHPGECVGALAAQSIGEPATQMTLNTFHFAGVGSK 1433
Query: 1073 NITQGVPRVKEIINASRNISTPIITAEL--MQPYDQEFARRVKGRICTSKLK 1122
N+T GVPR+KE+IN +N+ TP T L M DQ+ A+ + ++ + LK
Sbjct: 1434 NVTLGVPRLKELINIVKNVKTPSTTIYLDDMVSNDQQKAKDILTKLEYTTLK 1485
Score = 71.7 bits (168), Expect = 1e-10
Identities = 29/104 (27%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
+++ + V P +I++ + E++ +++ +DG P G+ D RMGT C TC
Sbjct: 15 KRVKRLELGVLDPEIIKKISVCEIVNVDIY-KDG--FPREGGLNDIRMGTIDYRTLCGTC 71
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVM 116
+ + C GHFG+I+L P++H G+ ++ +L+ +C C +++
Sbjct: 72 NMNVKYCPGHFGHIELAKPMYHYGFMNVVLNVLRCVCYHCGRLL 115
>UniRef50_Q8TXI8 Cluster: DNA-directed RNA polymerase; n=1;
Methanopyrus kandleri|Rep: DNA-directed RNA polymerase -
Methanopyrus kandleri
Length = 953
Score = 297 bits (730), Expect = 9e-79
Identities = 152/312 (48%), Positives = 215/312 (68%), Gaps = 8/312 (2%)
Query: 222 PLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTN-EDD 280
P+++ +IPDED+ +LG + + +RPE +LT LPVPP+ +RPS++ ++ G EDD
Sbjct: 179 PVDIRAWLEKIPDEDVEILGFHPERARPEWAVLTVLPVPPVTMRPSII--LETGERAEDD 236
Query: 281 LTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK--K 338
LT K +I+ +N + L + +I++ WD LQ H YI++E+ G+P+A K
Sbjct: 237 LTHKLVDIVRVNLRLKESLEAGAPEPIIEDQWDLLQYHVTTYIDNEIGGVPVARHRTGGK 296
Query: 339 PGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERV 398
P +G+VQRLKGK+GRFR NL+GKRV+FS+R+VI+PDP L +GVP +AK LT PERV
Sbjct: 297 PLKGIVQRLKGKEGRFRQNLAGKRVNFSARSVITPDPELDPFTLGVPEAIAKELTVPERV 356
Query: 399 FPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVD 458
N+ LR+LV NGP+ HPGANYV +R ++ + N+EK+A++L+ GDVVERHL+D
Sbjct: 357 TEWNIDRLRKLVLNGPNKHPGANYVVKRD-GSRIRITDENKEKLAEDLEPGDVVERHLMD 415
Query: 459 GDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNEC--VCTPYNADFDGDEMNMHLPQTEE 516
GD V+FNRQP+LH S + R +V P +TFR + +NADFDGDEMN+H+PQ+EE
Sbjct: 416 GDPVMFNRQPTLHIQSELGFRVRVMPGKTFRLPAACYMGVGFNADFDGDEMNLHVPQSEE 475
Query: 517 ARAEALILMGSH 528
ARAE LMG +
Sbjct: 476 ARAEVRELMGCY 487
Score = 116 bits (278), Expect = 5e-24
Identities = 93/331 (28%), Positives = 157/331 (47%), Gaps = 41/331 (12%)
Query: 655 VIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDW--GEEY--------AVRGMWRLARMA 704
V+I +V G +D+ T+ + R+ GE Y +R M ++ R+
Sbjct: 611 VVIEKGRIVRGFLDEKTVHGIMTEIVHRYAAREVARGESYPWFKAAETTLRAMDKIGRLG 670
Query: 705 SYYMMNRGFSFGIIDVTP--------GKKLIEAKNKLLESGYSKCDGYILEMEK----GT 752
++ GF+ GI + ++L + K + + + + E+E+
Sbjct: 671 LRFVTRYGFTLGIDEFEDIYERFRDEVERLCDEAAKKAKEIIERGERRLQELEEHETCNR 730
Query: 753 LQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQM 812
+ + G +E +E+ +++ L+ R + + N IM +SG++GS NI++M
Sbjct: 731 SRIERGEMLERNIESEVMAILNQPRVETERLLKKHRDLFNPAYIMPESGARGSITNIARM 790
Query: 813 IACVGQQALNGKR---------------VPNGFEDRSLPHFERHSKIPAAR--GFVENSF 855
GQQA+ G+R V + DR PHFE+ S IP + GFV + F
Sbjct: 791 ALIGGQQAVMGERPHRAKHNTEHIMEKIVNYSYTDRVTPHFEK-SLIPGVKEGGFVRSGF 849
Query: 856 YTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVV 915
+ GL E+F H M GREGL+D +TA++GYL RR V + DL++ VR++ V+
Sbjct: 850 FEGLDMVEYFLHAMSGREGLIDKGFRTADSGYLHRRYVTTALDLIVDSGGRVRDSANNVI 909
Query: 916 QFRYGSDGLDPTYMEGKDRPVDLA-RVLADV 945
Q YG DG+DP G + V+ A +V+ +V
Sbjct: 910 QLTYGEDGVDPAKKWGLNLDVEKALKVVKEV 940
Score = 90.6 bits (215), Expect = 2e-16
Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 5/147 (3%)
Query: 15 ISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGL 74
+ + F + P I++ + +EV + + +DG P GV+D RMG C TCG
Sbjct: 16 VKRILFGILPPDKIRKMSKVEVTSPETYDEDGY--PIEGGVMDTRMGVIDPGLRCRTCGQ 73
Query: 75 GLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEM 134
C GHFG+I+L PV H Y I +L+ C EC +V LPE +SY R+
Sbjct: 74 PAGRCPGHFGHIELARPVLHPRYAERIKDVLRATCPECGRVKLPEDEIESYLREV---RE 130
Query: 135 SYLLKKNLKAVVHKKAKTFSKCPSCEA 161
K++ A V +A+ CP C A
Sbjct: 131 GIRPVKSVAAEVIDRAEKRESCPHCGA 157
>UniRef50_Q4SF83 Cluster: DNA-directed RNA polymerase; n=1;
Tetraodon nigroviridis|Rep: DNA-directed RNA polymerase
- Tetraodon nigroviridis (Green puffer)
Length = 1745
Score = 292 bits (717), Expect = 3e-77
Identities = 177/439 (40%), Positives = 250/439 (56%), Gaps = 32/439 (7%)
Query: 494 VCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNG 553
V TPYNADFDGDEMN+HLPQ+ E RAE L ++ R+ +VTP++
Sbjct: 356 VTTPYNADFDGDEMNLHLPQSLETRAEIQEL--------AMVPRM--------IVTPQSN 399
Query: 554 ELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLW 613
++ QD +T T+RD F + E L L +T MP PAI+KPR LW
Sbjct: 400 RPVMGIVQDTLTAVRKFTKRDVFLDRGEVMNLLMFL-----STWDGKMPQPAILKPRALW 454
Query: 614 TGKQIFSLIMRPNRRCEVKANLETKGKNYTGN-KDLCVQDSYVIIRNSELVCGSMDKSTL 672
TGKQIFSLI+ P ++ + +G K + D+ VI+ N EL+ G + K +L
Sbjct: 455 TGKQIFSLII-PGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSL 513
Query: 673 GSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIID-VTPGKKLIEAKN 731
G+ S+ +I + G + + + + +++ G S GI D + K ++ +N
Sbjct: 514 GTSA-GSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQN 572
Query: 732 KLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPT 791
+ ++ + I + L+ PG T+ +T E + L+ R+ + + L
Sbjct: 573 TIKKAKQDVIE-VIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY 631
Query: 792 NAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFV 851
N M +GSKGS INISQ+IA VGQQ + GKR+P GF+ R+LPHF + P +RGFV
Sbjct: 632 NNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFV 691
Query: 852 ENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETG------YLQRRLVKSLEDLVLQYDM 905
ENS+ GLTPTEFFFH MGGREGL+DTAVKTAETG Y+QRRL+KS+E ++++YD
Sbjct: 692 ENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGKFVCRRYIQRRLIKSMESVMVKYDG 751
Query: 906 TVRNATGEVVQFRYGSDGL 924
TVRN+ +VVQ RYG DGL
Sbjct: 752 TVRNSINQVVQLRYGEDGL 770
Score = 239 bits (584), Expect = 4e-61
Identities = 126/274 (45%), Positives = 175/274 (63%), Gaps = 3/274 (1%)
Query: 220 MSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNED 279
+SP V +F+RI DE+ +LGM+ K +RPE +I+T LPVPPL +RP+VV A N+D
Sbjct: 37 LSPERVHEIFKRISDEEDMILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSA-RNQD 95
Query: 280 DLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-K 338
DLT K ++I+ IN+ + R+ S +I ED LQ H A +++E+ G+P AMQ +
Sbjct: 96 DLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 155
Query: 339 PGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERV 398
P + + QRLKGK+GR RGNL GKRVDFS+RTVI+PDPNLQI +VGVP +A +T+PE V
Sbjct: 156 PLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIV 215
Query: 399 FPANLQWLRRLVCNGPDVHPGANYV-QQRGLKTKKYLKYGNREKIAQELKCGDVVERHLV 457
P N+ L+ LV G +PGA Y+ + G + + Q H+
Sbjct: 216 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKASSKALHMC 275
Query: 458 DGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFN 491
DGD+V+FNRQP+LHK+S+M HR ++ P TFR N
Sbjct: 276 DGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 309
Score = 94.7 bits (225), Expect = 1e-17
Identities = 48/111 (43%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 1007 CGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHF 1066
C + + RL+ L K+ + + PG VGALAAQS+GEP TQMTL TFH+
Sbjct: 959 CSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHY 1018
Query: 1067 AGVASMNITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRIC 1117
AGV++ N+T GVPR+KE+IN S+ TP +T L+ ++ A R K +C
Sbjct: 1019 AGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARD-AERAKDILC 1068
>UniRef50_P16355 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=3; Trypanosoma brucei|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Trypanosoma brucei brucei
Length = 1744
Score = 287 bits (704), Expect = 1e-75
Identities = 220/689 (31%), Positives = 343/689 (49%), Gaps = 82/689 (11%)
Query: 343 LVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVF--- 399
+V K+G FR N+ GKRV+ + R+VISPDP ++ EV +P +A+ L++PE+V
Sbjct: 424 IVNSFAKKEGLFRMNMMGKRVNQACRSVISPDPFVEPNEVLLPRPLARALSFPEQVTCFA 483
Query: 400 PANLQWLRRLVCNGPDVHPGANYVQQR---------GLKTKKYLKYGNREKIAQELKCGD 450
PA + L+ V NGP +PGA +++ R L + + + + + G
Sbjct: 484 PARMNLLKHCVVNGPRKYPGATHIELRHANGEIRSVDLNVPEQTRRQHAARFFAMAQSGV 543
Query: 451 --VVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEM 507
+V RH+++GD V+FNRQP+LHK S+M +R KV +T RF+ +NADFDGDEM
Sbjct: 544 TLIVYRHILNGDRVIFNRQPTLHKPSMMGYRVKVLSGSKTIRFHYVNGNSFNADFDGDEM 603
Query: 508 NMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGG 567
N+H+PQ+ E RAE LM ++ N + P +G + QD + G
Sbjct: 604 NVHVPQSIETRAEVETLMDAN----------------INYLVPTSGRPIRGLIQDHVAAG 647
Query: 568 YLITQRDTFFTKSEAQQLA-----ACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLI 622
L+T RD FF S QL + T+ +P PAI+ PR +WTGKQ+ S++
Sbjct: 648 VLVTLRDKFFDHSTFVQLVYNGVGPYIQENVGITLAELIPIPAILMPRPMWTGKQLISVM 707
Query: 623 MRPNRR------C--EVKANLETKGKNY----------TGNKDL------CVQDSYVIIR 658
+R + C E++ + KG + G+ D V DS V+
Sbjct: 708 VRFSSGLSAASDCGREIEGGITLKGTSQIQPSAFDRIPAGSCDAVRAKSGAVVDSTVMFA 767
Query: 659 NSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGII 718
NSEL+ G M K LG+ S+ ++ +G + R+ + G S +
Sbjct: 768 NSELITGFMCKKQLGASNMSAPHHVY-ELYGPHRTGQLFAAFGRVLLLALRKEGLSLAMD 826
Query: 719 DVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSS-IR 777
D+ L++ + + CD + +++ L EE A M+++ ++ I+
Sbjct: 827 DMF----LVDEERR--------CD-LLRKLDDIALDVPD----EEATAAPMIADYATKIQ 869
Query: 778 ELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPH 837
+ P N L+M SG+KGSN+N +QM +GQQ +G RV ++LP
Sbjct: 870 QEFVPQRMLVPFPKNHLLLMTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPS 929
Query: 838 FERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLE 897
F + K + GF SF +G+ P E+ H M GR+GL+DTAVKT+ +G+LQR L+K LE
Sbjct: 930 FFTNEKRARSFGFAMGSFASGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLE 989
Query: 898 DLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNAEPL 957
LV+ +D TVR++ G V+QF YG DGLDP + + DV + +E +
Sbjct: 990 SLVVHWDRTVRDSNGSVIQFMYGGDGLDPCKASTLTAWEMMKDNVVDVSKRFGGDASESV 1049
Query: 958 DG--DGIVLAAEETLALDDFKTSTDEFKN 984
G DG +E + +D K +T+ +N
Sbjct: 1050 AGAEDGAAAGLKE-MRNEDGKPTTEAVQN 1077
Score = 66.5 bits (155), Expect = 4e-09
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1039 EPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKE-IINASRNISTPIIT 1097
EPG VG LAAQ+ GEP TQMTL TFH AG ++T+G+PR++E +I AS N + ++
Sbjct: 1158 EPGEPVGLLAAQAAGEPSTQMTLNTFHTAGSTVSHVTEGIPRLRELLIYASVNKAAVVVP 1217
Query: 1098 AELMQPYDQEFARRVKGRICTSKLKVKPAEVT 1129
D++ ++ +KL A+VT
Sbjct: 1218 VTNATEEDEKVIAKMLRAGVAAKLTDCLAKVT 1249
>UniRef50_Q9BHK6 Cluster: DNA-directed RNA polymerase; n=1; Spraguea
lophii|Rep: DNA-directed RNA polymerase - Spraguea
lophii
Length = 585
Score = 285 bits (700), Expect = 4e-75
Identities = 168/490 (34%), Positives = 265/490 (54%), Gaps = 33/490 (6%)
Query: 501 DFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAAT 560
DFDGDEMN+H+PQT +AE L + +V+P++ + ++
Sbjct: 1 DFDGDEMNLHMPQTYNTKAELQ----------------ELTYLPTQIVSPQSNKPVMGLV 44
Query: 561 QDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFS 620
QD + G ++ +DTF + E Q+ + + + PAI P+KLWTGKQ+ S
Sbjct: 45 QDSLLGISKLSSKDTFLKRKEVMQILFSSDFDQEKVFKT-LQRPAITNPKKLWTGKQLIS 103
Query: 621 LIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSI 680
+++ + KG N N+ + D V I N L+ GS DK GS T+ +
Sbjct: 104 VLL---------PKISYKGLNNLYNEYEVLSDGSVFIENGILIHGSFDKKIAGS-TQGGL 153
Query: 681 FYILLRDWGEEYAVRGMWRLARMASYYMMN-RGFSFGIIDVTPGKKLIEAKNKLLESGYS 739
+I+ D+ + + + RM + Y+ + FS GI D ++ + +
Sbjct: 154 IHIIKNDYNHKVVLDFINNSQRMVNSYITHIHSFSCGIGDTIADGNTMKKIMESISEAKD 213
Query: 740 KCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQ 799
I + ++G L+ PG T++E++E+ + L+ R+++ + + L +N M
Sbjct: 214 SVKATISDAKRGRLERLPGMTIKESIESKIKLSLNKARDVSGTSAQKSLSLSNNVKNMVL 273
Query: 800 SGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGL 859
+GSKGS INISQ+ ACVGQQ + GKR+P GF +R+LPHF + P +RGFVENSF +GL
Sbjct: 274 AGSKGSFINISQVTACVGQQNVEGKRIPFGFNERTLPHFSKGDHGPESRGFVENSFLSGL 333
Query: 860 TPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRY 919
P E FFHTMGG EGL+DT++KT+ETGY+QRRLVKSLED + YD +VRN + QF Y
Sbjct: 334 IPEELFFHTMGGGEGLIDTSIKTSETGYIQRRLVKSLEDCSIAYDGSVRNGNNNIFQFLY 393
Query: 920 GSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNA----EPLDGDGIVLAAEETLALDDF 975
G DG D T++E +++ +L ++ +D N +D + +V A ++ + +
Sbjct: 394 GEDGFDATFLE-RNKEQELNKLHRFYVEALKDNNILEHYANIDNNPVVYAKQDYPSANTS 452
Query: 976 KTSTDEFKNE 985
++T+E K E
Sbjct: 453 YSNTEELKKE 462
Score = 38.3 bits (85), Expect = 1.2
Identities = 19/28 (67%), Positives = 20/28 (71%)
Query: 1034 QRGVIEPGTAVGALAAQSIGEPGTQMTL 1061
QRG I VG LA+QSIGEP TQMTL
Sbjct: 558 QRGKIAYSGMVGTLASQSIGEPATQMTL 585
>UniRef50_Q6E6G2 Cluster: DNA-directed RNA polymerase; n=1;
Antonospora locustae|Rep: DNA-directed RNA polymerase -
Antonospora locustae (Nosema locustae)
Length = 1089
Score = 271 bits (665), Expect = 7e-71
Identities = 198/615 (32%), Positives = 318/615 (51%), Gaps = 58/615 (9%)
Query: 342 GLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPA 401
G+ Q L+ K+G FR + GKRV++++R+VISPDPNL+ +E+G+P+ AK LT+PE V P
Sbjct: 257 GIKQLLERKEGLFRKYIMGKRVNYAARSVISPDPNLETREIGLPLVFAKKLTFPENVTPF 316
Query: 402 NLQWLRRLVCNGPDVHPGANYVQQRGLKTK-KYLKYGNREKIAQELKCG-DVVERHLVDG 459
N LRR V NGP +PGA ++ + T ++ R +A +L G V RHL
Sbjct: 317 NHDRLRRAVINGPK-YPGAALLKSGDVVTNLLHVPEEKRVSLANQLLIGRKTVYRHLNKT 375
Query: 460 DVVLFNRQPSLHKLSIMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEAR 518
D +L NRQP+LHK SIM ++ ++ Q ++T R + C +NADFDGDEMN+H Q ++
Sbjct: 376 DFLLVNRQPTLHKPSIMAYKVRILQGEKTLRLHYANCNSHNADFDGDEMNVHAMQCYISK 435
Query: 519 AEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFT 578
+EA L N N NG + QD I ++T +D F
Sbjct: 436 SEARY----------------LALNDYNYKVATNGNPIRGLVQDHIVMSAVLTMKDYFLR 479
Query: 579 KS-------------EAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRP 625
S EA A + RI +P PAI +P L+TGKQ+ + +++
Sbjct: 480 PSEYGNVLQIPLLSKEAHHEKAAPVCSSGVLKRIIVPKPAIRRPVTLYTGKQVVTALLQ- 538
Query: 626 NRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILL 685
+ R + T G+ ++S V+I+N E++ G +DK+ LG K + +
Sbjct: 539 SLRLPISMR-RTSRLKLCGHP----EESTVVIKNGEMLTGVLDKNNLGPAEK-GLIHQCG 592
Query: 686 RDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYI 745
+G+ + ++++ + ++ G++ + D+ +K + + G D I
Sbjct: 593 EVFGDNVYNDLLTAVSQVINKLLVMDGYTLRMEDLLLSEKGEAGRKAAILEGRMHIDSAI 652
Query: 746 LEMEKGTLQCQPGCT-----MEETLEAVMLSEL-SSIRELAAKACFRELH-------PTN 792
+ L + G T ++++ A + S + +S+ E+A++ + +H P N
Sbjct: 653 RRYLEENL--EHGATGRPRHLDKSWVACLDSLVRNSMCEVASEVVAKSMHKGMLRNFPYN 710
Query: 793 APLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVE 852
+++ Q+G+KGS +N SQ+ A +GQQ L G+RVP + R+LP + + G +
Sbjct: 711 HLILIVQTGAKGSLVNASQISAMLGQQELEGRRVPLMVDGRTLPVLSETT--AESGGLIF 768
Query: 853 NSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATG 912
F G+ ++FH M GREGLVDTAVK A+ G + + + LE + ++YD TVRN
Sbjct: 769 ERFLDGIGICAYYFHCMAGREGLVDTAVKPADQG-ICSDVYQHLEGVKVEYDGTVRNNGN 827
Query: 913 EVVQFRYGSDGLDPT 927
+V FRYG DGLDPT
Sbjct: 828 AIVSFRYGEDGLDPT 842
Score = 75.4 bits (177), Expect = 9e-12
Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 1039 EPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-ASRNISTPIIT 1097
+PG VG +A QS+GEP TQMTL TFH AGV + N+T G+PR+ EI+ AS+NI TP +T
Sbjct: 912 QPGDPVGIVAGQSLGEPSTQMTLNTFHHAGVGAKNMTLGIPRLVEILMVASKNIRTPYLT 971
Score = 60.9 bits (141), Expect = 2e-07
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 16 SHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGLG 75
S V+F + S I + +EV F D P P+G+ D RMG + D C TC LG
Sbjct: 5 SSVSFTTYTASEILAISCVEVSVPASF--DSLGHPLPNGLYDERMGPLKMDGICRTCNLG 62
Query: 76 LAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEMS 135
EC GHFG+I L + + +F I + + C+ C ++ KK R F P+ S
Sbjct: 63 YFECPGHFGHIMLPDVMINPMHFDLIFKKVASTCERC----FSKAEKKCGRCSFRMPKFS 118
>UniRef50_Q0PQ09 Cluster: DNA-directed RNA polymerase; n=8;
Pezizomycotina|Rep: DNA-directed RNA polymerase -
Dermatocarpon miniatum
Length = 1011
Score = 264 bits (647), Expect = 1e-68
Identities = 133/332 (40%), Positives = 202/332 (60%), Gaps = 4/332 (1%)
Query: 601 MPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNS 660
+P PAI KPR WTGKQ+ S+++ P ++ K + DS + + +
Sbjct: 482 IPQPAIFKPRPRWTGKQMISMVLPPALNL---VRIDGKASQSPSERFAPAGDSGLFVADG 538
Query: 661 ELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDV 720
+L+ G +K ++G+G+ + + + ++G E A+ + +Y++++ GFS GI D
Sbjct: 539 QLMFGLFNKKSVGTGS-NGVIHTTFNEFGHETAMAFFNGAQTVINYWLLHNGFSIGIGDT 597
Query: 721 TPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELA 780
P ++A ++ ++ + L+ PG + ET E+ + + L+ R+ A
Sbjct: 598 VPDINTVDAIKLEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGARDEA 657
Query: 781 AKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFER 840
A L N + MA++GSKGS INISQM A VGQQ++ GKR+P GF+ R+LPHF +
Sbjct: 658 GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRTLPHFAK 717
Query: 841 HSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLV 900
A++GFVENS+ GLTPTEFFFH M GREGL+DTAVKTAETGY+QRRLVK+LE++
Sbjct: 718 DDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVT 777
Query: 901 LQYDMTVRNATGEVVQFRYGSDGLDPTYMEGK 932
++YD TVR++ G +VQF YG DGLD ++E +
Sbjct: 778 VKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQ 809
Score = 182 bits (442), Expect = 7e-44
Identities = 123/372 (33%), Positives = 195/372 (52%), Gaps = 18/372 (4%)
Query: 87 QLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEMSYLLKKNLKAVV 146
+L +PV+H G+ + +L+T+C C K+ +++ Y + + + L L
Sbjct: 1 ELAVPVYHYGFLGKVKKLLETVCHNCGKI---KAVDLRYALSVRDRKKRFELIWRLS--- 54
Query: 147 HKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKKVLMDFHEAKESNK 206
K+ + P E +KSS KI H +P L ++ ++ +
Sbjct: 55 QKQNVCQADSPDDEDDAIAKEKSS----KIRHGGCGNAQPQIRKSGLELWAQYKPRKGDD 110
Query: 207 EVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRP 266
E + ++ P + L +F+ + DE + LG+++ +RPE +IL LPVPP +RP
Sbjct: 111 EEETVPEKS---QIWPAQALQVFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPVRP 167
Query: 267 SVVSDI--KAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYIN 324
S+ D + EDDLT K +I+ N + R A + +E LQ H A Y++
Sbjct: 168 SISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMD 227
Query: 325 SEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVG 383
++++ + A +P + + RLKGK+GR R NL GKRVDFS+RTVI+ DPNL + EVG
Sbjct: 228 NDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 287
Query: 384 VPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIA 443
VP +A+ LTYPE V N+ L++LV NGP++HPGA Y+ R + L+Y +++
Sbjct: 288 VPRSIARTLTYPETVTRFNISKLKQLVTNGPEMHPGARYI-IREHNERIDLRY-HKDTSQ 345
Query: 444 QELKCGDVVERH 455
LK G VERH
Sbjct: 346 IALKVGWKVERH 357
Score = 42.7 bits (96), Expect = 0.058
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 935 PVDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFKNELLSFLKATA 994
P+++ R+L R + ++ P D + + LD E + L + AT
Sbjct: 888 PMNVVRILNQARTTFKIQSGAPSDLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQENATL 947
Query: 995 GRVRALRARYAGCGRAALQ--LERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSI 1052
LR+R A R ++ L RL +V + ++ + PG VG LAAQSI
Sbjct: 948 LIKAQLRSRLA-FKRLVMEYSLNRLAFDHVVGAIET---RFIKAAASPGEMVGVLAAQSI 1003
Query: 1053 GEPGTQMT 1060
GEP TQMT
Sbjct: 1004 GEPATQMT 1011
>UniRef50_Q9BHM2 Cluster: DNA-directed RNA polymerase; n=5;
Pleistophoridae|Rep: DNA-directed RNA polymerase -
Pleistophora typicalis
Length = 1117
Score = 263 bits (645), Expect = 2e-68
Identities = 147/363 (40%), Positives = 221/363 (60%), Gaps = 22/363 (6%)
Query: 224 EVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTM 283
+V +F+RI +++ +LG + + SRPE ++++ L V P +RPSVV + EDDLT
Sbjct: 152 KVHTIFKRICEDECLVLGFDGRFSRPEWMVISVLNVSPPAVRPSVVLEGML-RGEDDLTH 210
Query: 284 KQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRG 342
K ++I+ N +A++ +I++ LQ H A +++ ++G+P ++Q +P +
Sbjct: 211 KLADIVKANTNLAKYEREGAPGHIIRDYESLLQYHVATLMDNNIAGLPQSLQKSGRPLKS 270
Query: 343 LVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPAN 402
+ RLKGK+GR RGNL GKRVDFS+R+VISPD N+ + EVGVP +AKI T+PERV N
Sbjct: 271 ISARLKGKEGRVRGNLMGKRVDFSARSVISPDSNISLVEVGVPEAIAKIHTFPERVTGFN 330
Query: 403 LQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVV 462
+ L R+V NGP+ PGAN+V + + K L++ + E G VVERH+ D D+V
Sbjct: 331 KERLERMVRNGPNRWPGANFVTRED-EQKIGLRFNRNSVLLTE---GCVVERHMADNDIV 386
Query: 463 LFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEAL 522
LFNRQP+LHK+S+M HRA++ +TFR N V TPYNADFDGDEMN+++PQ+ RAE
Sbjct: 387 LFNRQPTLHKMSMMAHRARIMKGKTFRLNLSVTTPYNADFDGDEMNLNMPQSFNTRAEL- 445
Query: 523 ILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEA 582
N + N+V+ + + ++ QD + G +T +D F + EA
Sbjct: 446 -----ENLCIVA----------KNVVSCQGNKPVMGIVQDSLVGVRKMTGQDVFIERYEA 490
Query: 583 QQL 585
L
Sbjct: 491 MHL 493
Score = 198 bits (484), Expect = 6e-49
Identities = 116/327 (35%), Positives = 185/327 (56%), Gaps = 27/327 (8%)
Query: 604 PAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELV 663
PAI++PRK++TG Q+FS ++ T +D V+I++ L+
Sbjct: 571 PAILRPRKIYTGAQMFSFVL----------------PRITYRRDA------VLIKHGILI 608
Query: 664 CGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPG 723
G +DK +G+ ++ S+ ++L+ + + A L R+ +++ GF+ GI D
Sbjct: 609 KGRIDKKIVGT-SQGSLVHVLVLEGLDVVAFFD--NLQRVVCSFLLQVGFTMGIGDTVAD 665
Query: 724 KKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKA 783
+ ++ + ++ + + I +G L+ PG + ET EA + L+ R+++ K
Sbjct: 666 EATMKMVVRSIKESKEEVNRLIRVAREGRLKKMPGMGLRETFEARISQTLNKARDVSGKN 725
Query: 784 CFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSK 843
L N +M +GSKGS INISQ+ ACVGQQ + G R+ R+LPHF +
Sbjct: 726 ASESLEAENNVRMMVMAGSKGSLINISQVTACVGQQNVEGHRISFS-NQRTLPHFHKDDN 784
Query: 844 IPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQY 903
+RGFVENS+ + L EFFFH MGGREGL+DTAVKTAETGY+QRRL+K +E+ + +
Sbjct: 785 RAESRGFVENSYLSSLRADEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKCMENCQIAF 844
Query: 904 DMTVRNATGEVVQFRYGSDGLDPTYME 930
D +VRN++ +++ F YG DG D + +E
Sbjct: 845 DGSVRNSS-DLITFLYGDDGFDASQIE 870
Score = 45.2 bits (102), Expect = 0.011
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 1013 QLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTL 1061
++ +L L L+ + Y R ++ G VG LA+QSIGEP TQMTL
Sbjct: 1069 KMRQLELKSLISLCSLIKGAYHRSLVNVGEMVGTLASQSIGEPATQMTL 1117
Score = 39.5 bits (88), Expect = 0.54
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 84 GYIQLTLPVFHVGYFRAIITILQTICKECAKV 115
G+++LT PVFHVGY I +L+ +C C+++
Sbjct: 1 GHMELTRPVFHVGYMNKIKKLLEIVCFYCSRI 32
>UniRef50_P42486 Cluster: DNA-directed RNA polymerase subunit 1;
n=1; African swine fever virus BA71V|Rep: DNA-directed
RNA polymerase subunit 1 - African swine fever virus
(strain BA71V) (ASFV)
Length = 1450
Score = 262 bits (642), Expect = 4e-68
Identities = 215/737 (29%), Positives = 355/737 (48%), Gaps = 51/737 (6%)
Query: 215 GLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKA 274
G + ++ P + +F R+ + + LG + K S PE L+L + +PP+ IRP + I +
Sbjct: 160 GKIDKLYPQIIREIFSRVTYDTVVKLGRS-KNSHPEKLVLKAIQIPPISIRPGIRLGIGS 218
Query: 275 GTNE-DDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLA 333
G D+ ++ N +I + L ++ LQ LY N + +
Sbjct: 219 GPQSFHDINNVIQYLVRKNLLIPKDLQIVRGQKIPLNIDRNLQTIQQLYYNFLLDSVSTT 278
Query: 334 -----------MQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEV 382
+ +P +++RL K+GR R +L G +V SR+ I + +L + EV
Sbjct: 279 ATQGGTGKRGIVMGARPAPSIMRRLPRKEGRIRKSLLGSQVWSISRSTICGNSDLHLDEV 338
Query: 383 GVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKI 442
G P+ A+ L E V N+ L NG +PG + V ++ ++ ++ G ++
Sbjct: 339 GYPISFARTLQVAETVQHYNINRLMPYFLNGKRQYPGCSRVYKQITQSVHDIE-GLKQDF 397
Query: 443 AQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV--QPQ-RTFRFNECVCTPYN 499
L+ GD++ R +V GDV FNRQPSL + SI HR V P+ TF+ N C YN
Sbjct: 398 --RLEVGDILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLENPKISTFQMNVSACAWYN 455
Query: 500 ADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAA 559
ADFDGD+MN+ +P + +R EA +L N ++ KS+ P NG++
Sbjct: 456 ADFDGDQMNLWVPWSVMSRVEAELLCSVRNWFIS---------TKSS--GPVNGQV---- 500
Query: 560 TQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIF 619
QD G +L+T+ +T K+ +L A G T + D P A P L GK +
Sbjct: 501 -QDSTVGSFLLTRTNTPMGKNVMNKLHA---MGLFQTTQTDPPCFANYSPTDLLDGKSVV 556
Query: 620 SLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSS 679
S++++ +A + Y QD IRN EL+ G +DK +G+G+
Sbjct: 557 SMLLKQTPINYQRAP-TWYSEVYAPYMHYNKQDISTQIRNGELIEGVLDKKAVGAGSSGG 615
Query: 680 IFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIID--VTP--GKKLIEAKNKLLE 735
I++++ R +G + A++ ++ ++A Y+ N GF+ D +TP +++ E NKLL
Sbjct: 616 IYHLISRRYGPQQALKMIFATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINKLLL 675
Query: 736 SGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHP-TNAP 794
+ + +L G + G T + E + L+ L + K ++P TN
Sbjct: 676 ES-EEINNRLLH---GDIMPPIGLTTHDFYEKLQLNAL-KFPDRILKPIMNSINPETNGL 730
Query: 795 LIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFE-DRSLPHFERHSKIPAARGFVEN 853
M +G+KGSN N+ ++A +GQ +N +R+ F R+L ++ R + A GF+ N
Sbjct: 731 FQMVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSFGRTLVYYPRFALEAQAYGFICN 790
Query: 854 SFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGE 913
S+ GLT EF F M GR L++ A+ T+ TGY R+ + L+ ++ Y V T
Sbjct: 791 SYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRVSIDT-R 849
Query: 914 VVQFRYGSDGLDPTYME 930
+VQ YG DGLD +E
Sbjct: 850 LVQQLYGEDGLDARQLE 866
Score = 56.8 bits (131), Expect = 3e-06
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 14 KISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCG 73
+I+ V FN+ + ++ +EV NLF +G +PA G+ D RMGT C TC
Sbjct: 7 EIAAVQFNIAGDNDHKRQGVMEVTISNLF--EGT-LPAEGGIYDARMGTTDHHYKCITCS 63
Query: 74 LGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKEC 112
+C+GH G +Q+ PV + I L+ IC C
Sbjct: 64 HQRKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNC 102
Score = 45.6 bits (103), Expect = 0.008
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 1010 AALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGV 1069
A ++ +T Q+ L + +Y + +I G AVG LAAQS+ EP TQ L + H V
Sbjct: 1007 ATVKTLNITCEQMSAILDLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDS-HHRSV 1065
Query: 1070 ASMNITQGVPRVKEIINA 1087
A G+ R +EI +A
Sbjct: 1066 AGGTNKSGIVRPQEIFSA 1083
>UniRef50_Q06VN9 Cluster: DNA-directed RNA polymerase; n=1;
Trichoplusia ni ascovirus 2c|Rep: DNA-directed RNA
polymerase - Trichoplusia ni ascovirus 2c
Length = 833
Score = 257 bits (629), Expect = 2e-66
Identities = 258/929 (27%), Positives = 415/929 (44%), Gaps = 132/929 (14%)
Query: 14 KISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCG 73
+IS + F + S + +++ + EV T++ + G V D R G Q + C TCG
Sbjct: 2 EISSIDFELMSDNDMEELSTYEV-TRH---RQGPNNDTTGTVFDIRSGA-QGNKPCGTCG 56
Query: 74 LGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAK-VMLPESLKKSYRRKFINP 132
G +C GHFG+I L P+ H + + I++ IC+ C K +M + +KK + P
Sbjct: 57 QGAYDCPGHFGHINLAKPIIHPLFLHQVRDIMRIICRACHKPIMTEKKVKKIISSDSVGP 116
Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVK 192
K + +V + C C + K S++ PT K
Sbjct: 117 -------KRISDLVQLVDRRGIFCMHCNTVPAQYKLSAM--------------PTTKTSK 155
Query: 193 KVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDL 252
AK+ V + K ++ EV + IP + + + +K P +
Sbjct: 156 --------AKKKIHRVLCQVIGTQKKWLNDEEVATILDDIPQDCVDTI---LKTVHPSRM 204
Query: 253 ILTR-LPVPPLCIR-PSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQE 310
IL + L +PP+C + SDI+ +DDLT+ +I+ +N+ IA+ L + C+
Sbjct: 205 ILRKWLVIPPVCRHLENGRSDIQ---RDDDLTVLLCDIVRLNN-IAKDLTQS--CD--DR 256
Query: 311 DWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTV 370
D + + + + RG++ R+KGK G R NL GKR + + RTV
Sbjct: 257 DKALADVKTKISVYCTNTAKVKRNDNGDMVRGIIDRIKGKHGLIRNNLLGKRSEMAGRTV 316
Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKT 430
I PDP L++ +VG P +A+ L PE+V +NLQW ++V +H G
Sbjct: 317 IGPDPTLKLDQVGFPRVMAQHLYIPEKVTESNLQWAEQMV-----LHNGTK--------- 362
Query: 431 KKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRF 490
+ ++ G +K ++CGD + R L DGD+VL NRQP+LHK S+M R ++ TF
Sbjct: 363 PRIIRNGKMKKDCA-IQCGDFICRPLQDGDIVLMNRQPTLHKGSMMAFRIRLHESLTFTL 421
Query: 491 NECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTP 550
N +NADFDGDEMN +PQ+ A E H + T + +K++
Sbjct: 422 NLATTKAFNADFDGDEMNCFVPQSVAASVEL-----QHLSTPTACLN---SGDKAS---- 469
Query: 551 RNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATM-----RIDMPPPA 605
I QD +T Y ++ D + + + +A ++ +A + +ID
Sbjct: 470 ------ICIVQDCLTAAYCMSIED-IYEHTVPRDVAFDIILASNANVSNLLEKIDYIRHR 522
Query: 606 IIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCG 665
PR ++ GK + SL Y DL + D L+ G
Sbjct: 523 FNIPRHVFNGKMLISLAF--------------PAMFYFQCGDLIIDDGI-------LISG 561
Query: 666 SMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKK 725
+ K TLG T+ SI + D A + RL + + +M +GF+ D +
Sbjct: 562 CLSKRTLGP-TRDSIIRKIGNDISRGAAGEFVDRLQFITTAWMTYKGFTVTAKDFLHAGE 620
Query: 726 LIE--AKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKA 783
LI A +K+ + + C+ I E L+ T+ T + V ++ +++ +
Sbjct: 621 LISNIADSKMADVRH-MCNTIIDE----NLKEYRINTILATAKDV---GMNIVKKNSGTD 672
Query: 784 CFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFED--RSLPHFE-- 839
C +N +++ +SGSKG N+ Q +GQQ +NG R+P D RS H +
Sbjct: 673 C------SNLAIMI-ESGSKGDYFNVGQTKGMLGQQLVNGCRIPMVINDGMRSCVHSKFS 725
Query: 840 --RHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLE 897
RH + RGF+ F GL P E+ FH M GRE + +A +TA+TGY RR+ K E
Sbjct: 726 ETRHDVLIKNRGFITRGFSNGLDPREWIFHCMSGRESVCSSATETADTGYTTRRVNKFGE 785
Query: 898 DLVLQYDMTVRNATGEVVQFRYGSDGLDP 926
D+++ D V + G + Q YG GLDP
Sbjct: 786 DIIIHNDGVVADNNGIIYQMAYGDLGLDP 814
>UniRef50_Q9BHJ4 Cluster: DNA-directed RNA polymerase; n=2;
Trachipleistophora|Rep: DNA-directed RNA polymerase -
Trachipleistophora hominis
Length = 1056
Score = 256 bits (627), Expect = 3e-66
Identities = 140/297 (47%), Positives = 192/297 (64%), Gaps = 6/297 (2%)
Query: 225 VLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMK 284
V +F+RI E+ LG + + +RPE +I++ L VPP +RPSVV + EDDLT K
Sbjct: 98 VHTVFKRISTEECEALGFDEQYARPEWMIISVLNVPPPAVRPSVVLEGML-RGEDDLTHK 156
Query: 285 QSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGL 343
++I+ N +A++ +I++ LQ H A +++ + G+P ++Q +P + L
Sbjct: 157 LADIVKANANLAKYEREGAPGHIIRDYESLLQYHVATLMDNNIPGLPQSLQKSGRPLKSL 216
Query: 344 VQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANL 403
RLKGK+GR RGNL GKRVD S+R+VISPD N+ + EVGVP +A+I T+PE V N
Sbjct: 217 SARLKGKEGRVRGNLMGKRVDSSARSVISPDSNISLCEVGVPEQIARIHTFPEHVTAFNK 276
Query: 404 QWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVL 463
L LV NGP+ PGAN+V + + + L++ NR I L G VVERH+ GDVVL
Sbjct: 277 ARLEALVRNGPNKWPGANFVTREDGQ-RIDLRF-NRNSIL--LTEGCVVERHMTAGDVVL 332
Query: 464 FNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAE 520
FNRQPSLHK+S+M HRA+V +TFR N V +PYNADFDGDEMN+H+PQ RAE
Sbjct: 333 FNRQPSLHKMSMMAHRARVMKGKTFRLNLSVTSPYNADFDGDEMNLHMPQNHNTRAE 389
Score = 206 bits (502), Expect = 4e-51
Identities = 120/322 (37%), Positives = 181/322 (56%), Gaps = 27/322 (8%)
Query: 604 PAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELV 663
PA+++PR+L+TGKQ+FS C + +G V+I++ L+
Sbjct: 552 PAVLRPRRLFTGKQMFS--------CTLPCINYERGD--------------VLIKHGILI 589
Query: 664 CGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPG 723
G +DK +G+ S + + L + ++ VR L R+ + Y++ GF+ G+ D
Sbjct: 590 KGCIDKKVVGTSQGSLVHVLALEN---KHIVRFFDSLQRVVNGYLLQAGFTMGVGDTIAD 646
Query: 724 KKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKA 783
+ + + + + + I + GTL+ PG + ET E+ + L+ R+++ +
Sbjct: 647 ECTLRDVMEGIRASKQEVRALIADARSGTLRRMPGMNLRETFESRISQALNRARDVSGSS 706
Query: 784 CFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSK 843
L N +M +GSKGS INISQM ACVGQQ + G R+ R+LPHF +
Sbjct: 707 ANAGLGTANNVRMMVMAGSKGSLINISQMTACVGQQNVEGHRIAFS-NQRTLPHFHKDDD 765
Query: 844 IPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQY 903
PA+RGFVENS+ GL EFFFH MGGREGL+DTAVKTAETGY+QRRL+KS+E+ + +
Sbjct: 766 RPASRGFVENSYLAGLRAHEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMENCQIAF 825
Query: 904 DMTVRNATGEVVQFRYGSDGLD 925
+ +VR+ +VV F YG DG D
Sbjct: 826 NGSVRSER-DVVSFLYGDDGFD 846
Score = 48.0 bits (109), Expect = 0.002
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 1013 QLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMT 1060
+L L L L+R V KY R ++ PG VG LA+QSIGE TQMT
Sbjct: 1008 KLRLLDLKTLIRMSNVIREKYYRALVCPGEMVGTLASQSIGEHATQMT 1055
Score = 44.4 bits (100), Expect = 0.019
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 84 GYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRK 128
G+I+LT PVFHVGY I +L+T+C C+++ + K+ R+
Sbjct: 1 GHIELTRPVFHVGYMNKIKKLLETVCFYCSRIKAYDVHKEGVHRQ 45
>UniRef50_A0DJB3 Cluster: DNA-directed RNA polymerase; n=2;
Oligohymenophorea|Rep: DNA-directed RNA polymerase -
Paramecium tetraurelia
Length = 1696
Score = 245 bits (600), Expect = 5e-63
Identities = 171/477 (35%), Positives = 249/477 (52%), Gaps = 33/477 (6%)
Query: 276 TNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQ 335
TN T E L +D + +L + + I + W LQ +NSE + +
Sbjct: 437 TNAPAQTQSSMEALKQSDHMKNNLKKIIRLDTIMQKWLELQDCVVGLVNSERA----QNK 492
Query: 336 PKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYP 395
+ G+ Q L+ KQG FR + GKRV+F+ R+VISPDP L EVGVP +A+ L P
Sbjct: 493 QNRETPGVKQLLERKQGLFRMKMMGKRVNFACRSVISPDPLLSTNEVGVPTVLARKLIIP 552
Query: 396 ERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLK-TKKYLKYGNREKIAQELKCGD--VV 452
E V N Q++ L+ NGP V+PGA Y Q+ G K +YL R I +EL G+ VV
Sbjct: 553 ENVNSLNQQYVADLIMNGP-VYPGALYFQEDGKKIALEYLTPQQRMAIVRELGSGENKVV 611
Query: 453 ERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHL 511
RHL GDV+LFNRQPSLHK SIM H +V P ++T RF+ C YNADFDGDEMN+H
Sbjct: 612 WRHLRTGDVMLFNRQPSLHKPSIMGHIVRVLPNEQTIRFHYANCKSYNADFDGDEMNLHF 671
Query: 512 PQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLIT 571
Q+ RAE +N A+ N ++ NG+ L QD I +T
Sbjct: 672 IQSMIGRAE------GYNIAL----------NDYQYISQTNGKPLRELMQDMIVSSVFLT 715
Query: 572 QRDTFFTKSEAQQL--AACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMR----- 624
RDTF TK + QL A + +I++ PAI+KP++LWTGKQ+ S I++
Sbjct: 716 LRDTFLTKQQYMQLIYTAIWSLFEKNSQKIELLQPAILKPKQLWTGKQLISNIIKIIVGL 775
Query: 625 PNRRCEVKANLETKGKNYTGN-KDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYI 683
++ NLE+K K + + D V+I+++EL+ G +DK+ +GSG + +
Sbjct: 776 NGYDPDIGLNLESKCKLSSKELPGMASDDIQVLIKDNELLLGIVDKNQVGSGADYGMMHA 835
Query: 684 LLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSK 740
+G + + + AR+ + Y+ GF+ G+ D+ + E + L+E K
Sbjct: 836 FHELYGPKMTGQLLTGFARLFAAYLQYHGFTCGMDDLIVDELHDEKRRVLIEENLKK 892
Score = 220 bits (538), Expect = 2e-55
Identities = 127/319 (39%), Positives = 187/319 (58%), Gaps = 15/319 (4%)
Query: 786 RELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIP 845
++L P N +M +G+KGSN+N SQ+ A +GQQ L G+RVP RSLP F + P
Sbjct: 986 QKLFPLNLFSMMTMTGAKGSNVNHSQVSALLGQQELEGRRVPLMPTGRSLPSFLPYDPNP 1045
Query: 846 AARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDM 905
A G+V + F TGL P EFFFH M GREGL+DTAVKT+ +GYLQR L+K LE L++QYD+
Sbjct: 1046 RAGGYVADRFLTGLRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLIVQYDL 1105
Query: 906 TVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRA--KCQDKNAEPLDGDGIV 963
TVR+ G ++Q YG DG+D T + ++ LA+ + + Q+ DG
Sbjct: 1106 TVRDNDGSLIQLFYGEDGIDTTKTKYLEKFSFLAQNNQHYKQLYRVQEMKQHFKTLDGAS 1165
Query: 964 LAAEETLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYAGCGRAALQLERLTLTQLV 1023
+ E ++ F S + L A + +V++ Y + LQ ++++ Q
Sbjct: 1166 VELENDTLMNAFNPSQN---------LGAVSMKVQSTMNEYLQKCQNELQQKKISNKQ-- 1214
Query: 1024 RFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKE 1083
F + + +Y R ++ PG AVG +AAQSIGEP TQMTL TFH AG N+T G+PR++E
Sbjct: 1215 -FKSLANIRYLRALMHPGEAVGCVAAQSIGEPSTQMTLNTFHLAGHGEKNVTLGIPRLRE 1273
Query: 1084 II-NASRNISTPIITAELM 1101
I+ A++ TP ++ + +
Sbjct: 1274 ILMTATKKQKTPTMSLQFL 1292
Score = 58.8 bits (136), Expect = 8e-07
Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 8 ETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGT--NQK 65
++ + ++I V F + I++ + E+ F D P G+ D +G +++
Sbjct: 17 QSVITKRIQSVHFGYYTAKEIREMSVKEISNPKAF--DKLNHPIRGGLYDPALGVQPHER 74
Query: 66 DANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSY 125
C TCG +C GH G+I+L LPV++ +++++++ C C K+ + + KK Y
Sbjct: 75 GTRCVTCGQENMDCTGHVGHIELLLPVYNPYLVNQLMSLMRSKCYYCHKLRITKDRKKFY 134
Query: 126 RRKF 129
+ F
Sbjct: 135 KNNF 138
>UniRef50_Q23DD6 Cluster: DNA-directed RNA polymerase; n=1;
Tetrahymena thermophila SB210|Rep: DNA-directed RNA
polymerase - Tetrahymena thermophila SB210
Length = 1727
Score = 235 bits (575), Expect = 5e-60
Identities = 153/421 (36%), Positives = 230/421 (54%), Gaps = 36/421 (8%)
Query: 338 KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPER 397
+ G G+ Q L+ K+G FR + GKRV++++R+VISPDPNL EVGVP+ VAK LT+PE
Sbjct: 493 REGTGIRQLLEKKEGLFRMKMMGKRVNYAARSVISPDPNLNTNEVGVPLFVAKKLTFPEY 552
Query: 398 VFPANLQWLRRLVCNGPDVHPGANYVQQRGLK-TKKYLKYGNREKIAQEL---KCGDVVE 453
V N + LR+L+ NGP HPGAN++ + G K + + L R +A+ L VV
Sbjct: 553 VNEYNAKHLRKLIINGPFQHPGANFIVENGNKISLEALNEQQRIGLAKTLLNNSKNKVVY 612
Query: 454 RHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLP 512
RHL GDV+LFNRQP+LHK S+M H A+V P ++T R + C YNADFDGDEMN+H
Sbjct: 613 RHLQSGDVLLFNRQPTLHKASLMSHIARVLPREQTIRMHYANCKSYNADFDGDEMNLHFL 672
Query: 513 QTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQ 572
Q+ ARAE G H +SL N + NG L QD I +T
Sbjct: 673 QSHLARAE-----GYH---------ISL--NDRQFINTTNGNPLRELIQDTIVSAVFLTH 716
Query: 573 RDTFFTKSEAQQLAACLL-----AGPDAT---MRIDMPPPAIIKPRKLWTGKQ----IFS 620
++ F K E Q+L ++T +I + PPAI KP+ LWTGKQ I
Sbjct: 717 KEKFLQKEEFQELVYAATWNMFEKNNNSTTKPYKIFLVPPAIQKPKPLWTGKQLITNIIK 776
Query: 621 LIMRPNRRCEVKAN--LETKGKNYTGN-KDLCVQDSYVIIRNSELVCGSMDKSTLGSGTK 677
++++ N++ + + +E K K + D+ VIIR++EL+ G +DK+ G+G
Sbjct: 777 IVVQQNQKKDYEQGVYMEMKAKLTADELTGIYKDDTVVIIRDNELLQGVLDKNQFGAGAT 836
Query: 678 SSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESG 737
+ + +G + LA++ S ++ GF+ G+ D+ K+ E + + +++
Sbjct: 837 YGLMHAFYELYGASLTGKLFTALAKLLSAHLQMHGFTCGMDDLLVSKESDEQRLQEIKAA 896
Query: 738 Y 738
+
Sbjct: 897 H 897
Score = 209 bits (510), Expect = 4e-52
Identities = 144/428 (33%), Positives = 215/428 (50%), Gaps = 25/428 (5%)
Query: 690 EEYAVRGMWRLARMASYYMMNRG-FSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEM 748
++Y V W L ++ + ++G FS ++ P + +N +LE K L
Sbjct: 911 KDYEVPQGWNLYNRPNFVLNSKGRFSSNVLKRKPEVDYLSNENPILEQIQRK-----LVR 965
Query: 749 EKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNIN 808
+ + Q + ++ M + S I A ++ P N M SG+KGS +N
Sbjct: 966 DPQLAEAQ-----DNVYKSTMSQKGSKILNTALGGLIKKF-PFNNFTTMTNSGAKGSKVN 1019
Query: 809 ISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHT 868
+Q+ A +GQQ L G+RVP R+LP F + P A GF+ + F +GL P EFFFH
Sbjct: 1020 HTQVSALLGQQELEGRRVPVMATGRTLPCFLPYDPNPRAGGFISDRFLSGLRPAEFFFHC 1079
Query: 869 MGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTY 928
M GREGL+DTAVKT+ +GYLQR L+K LE L + YD TVR+A G VVQF YG D +DP
Sbjct: 1080 MAGREGLIDTAVKTSRSGYLQRCLMKHLEALKVAYDYTVRDADGSVVQFYYGEDSIDPNK 1139
Query: 929 MEGKDRPVDLARVLADVRAKCQD---KNAEPLDGDGIVLAAEETLALDDFKTST-DEFKN 984
++ ++ LA K K++ + L + + + T D N
Sbjct: 1140 VKYLEKFRFLAENFTSFTQKYDPYHLKDSHDFESVNRFLKKRKRQESSETEKKTCDTIMN 1199
Query: 985 ELL--SFLKATAGRVRALRARYAGCGRAAL----QLERLTLTQL--VRFLRVCHHKYQRG 1036
L + + + RV Y + + + + QL +F + + KY
Sbjct: 1200 NFLPGKHIGSVSERVYKNVKEYIKKEQQSADPYSNIFNIKQDQLSPQKFHMLFNVKYLNS 1259
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEII-NASRNISTPI 1095
+I PG +VG LAAQ+IGEP TQMTL TFH AG +N+T G+PR++EI+ A+ + TP+
Sbjct: 1260 LIHPGDSVGCLAAQAIGEPSTQMTLNTFHLAGHGGVNLTLGIPRLREILMTATDKLKTPV 1319
Query: 1096 ITAELMQP 1103
+ L P
Sbjct: 1320 MLLNLSNP 1327
Score = 60.1 bits (139), Expect = 4e-07
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 5 QYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQ 64
Q++E + R+++ V F+ + I++ + E+ F D P G+ D MG +
Sbjct: 7 QFQEV-ISRRLAGVGFSYYTADEIRKLSVKEITNPIAF--DSLNRPIKGGLYDPCMGVSP 63
Query: 65 KD--ANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLK 122
D CETCG EC GH G+++L LPV++ ++ +L+ C +C K +
Sbjct: 64 YDKFTRCETCGCEGLECPGHMGHVELLLPVYNPFLIDKLLKLLRAQCLKCNKFRMTNQKL 123
Query: 123 KSYRRKFINPEMSYLLK 139
K + F ++ Y+ +
Sbjct: 124 KMFANVFTLIKLGYIFE 140
>UniRef50_Q196X0 Cluster: DNA-directed RNA polymerase; n=1; Aedes
taeniorhynchus iridescent virus|Rep: DNA-directed RNA
polymerase - Aedes taeniorhynchus iridescent virus
Length = 1377
Score = 219 bits (534), Expect = 5e-55
Identities = 193/688 (28%), Positives = 326/688 (47%), Gaps = 74/688 (10%)
Query: 416 VHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSI 475
+ PG + R K K ++Y R++I EL+ GDV++R L+DGD VL NRQP+LHK S+
Sbjct: 412 LQPGDTII--RNGKALKEIRYPERKQI--ELEVGDVIKRQLMDGDYVLLNRQPTLHKASM 467
Query: 476 MCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVI 535
M + ++P +T + N + P+N DFDGDEMN+H+PQ+ EA AE L + ++V
Sbjct: 468 MAFKVVIKPVKTLKINLAITKPFNCDFDGDEMNIHVPQSYEAIAELKELSCASKCIMSV- 526
Query: 536 IRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDA 595
+NG+ +A QD + G + +++ F + Q LL A
Sbjct: 527 ---------------QNGKPNVAIVQDSLIGLWFLSRDQWFCQTLKRSQFFNLLLTIDKA 571
Query: 596 TMRIDMPPPA--IIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKN-----YTGNKDL 648
+ ++K + G S + R + G+ + + D
Sbjct: 572 QNFLTRMDQICHVLKSKFPSKGNWEGSGLDGDGRVSPKVGRMVFNGRGLLSFLFPYDFDY 631
Query: 649 CVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYM 708
C D + I + + G+++K+ + + K YI +D+GE + + + ++Y+
Sbjct: 632 CGGDG-LSIESGVFLEGTLEKNVVNTLIK----YIY-KDYGETVVADFVDNIQFLTNHYL 685
Query: 709 MNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAV 768
++RGF+ D + + L + +SK + T+ P ++TL A+
Sbjct: 686 VDRGFTINASDCLKNESIAPEIVSLTRATFSKAT----TVRDVTIN--PFIQEQKTL-AI 738
Query: 769 MLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPN 828
+ S +L+ K C L N + +SGSKGS NI Q+ + +GQQ ++GKRV
Sbjct: 739 LNSCTDQCMKLS-KEC---LSSDNNFCVTTESGSKGSIFNICQITSLLGQQTIDGKRV-- 792
Query: 829 GFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYL 888
L H + + RGF+ NSF GL+P EF H M GR+G++DTA+ T+ +GY
Sbjct: 793 ----YGLLHPQDNEF--QDRGFIANSFVEGLSPREFLHHAMAGRKGVIDTALLTSVSGYG 846
Query: 889 QRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPT---YMEGKDRPVDLARVLADV 945
QR+ VK ED+ + D TVR+ G + Q+ +G G DP+ ++G ++ R++ +
Sbjct: 847 QRQGVKLNEDIKIYPDYTVRDVNGRLYQYIFGEAGYDPSQTIVVDGHQTICNVYRLVNRL 906
Query: 946 RAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFKNELLSFLK-ATAGRVRALRARY 1004
PL D I + +++ + + + S + G++R ++
Sbjct: 907 NRSYDSSALRPLTEDEIEWMVDFIQPRREYEYIPPDVEQRICSIRRDPIVGQLRRIQ--- 963
Query: 1005 AGCGRAALQLERLTLTQLVRFLRVCHHK-YQRGVIEPGTAVGALAAQSIGEPGTQMTLKT 1063
T+ LV L+ K + + ++ PG VG + AQS+GE TQ TL T
Sbjct: 964 -------------TVDALVPILKSHLEKCFYQTLMSPGECVGIIGAQSMGEFSTQATLNT 1010
Query: 1064 FHFAGVASMN-ITQGVPRVKEIINASRN 1090
FH AG + +T + R +EI NA++N
Sbjct: 1011 FHVAGSTTTGAVTNCLTRFQEINNATKN 1038
Score = 106 bits (254), Expect = 4e-21
Identities = 79/227 (34%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 203 ESNKEVAAMINSGLVKE-MSPLEVLNLFR---RIPDEDIPLLGMNVKLSRPEDLILTRLP 258
ES K +++N +V E +PL+ L R + DE + LG N +S P++ I T P
Sbjct: 136 ESEKLPLSVVNEIIVDEDKNPLDTRKLLRVLENVDDETVRFLGFNPTMSHPKNFIFTVFP 195
Query: 259 VPPLCIRPSVVSDIKAGTNEDDLTMKQSEIL----LINDVIARHLASAGKCELIQED--- 311
+ P C RP V+S+ +DDLT + EI+ + D + K L+Q
Sbjct: 196 ILPPCCRPYVMSE--ENCCDDDLTYQLIEIIKNNQYLGDEFLKKAELKRKKSLLQSSLPP 253
Query: 312 -WDYLQLH-------AALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRV 363
D Q H + Y N+ A KP GL +R+ GK+G+ R NL GKR
Sbjct: 254 TTDIKQKHLTNLWFRISTYFNNSKKKAKHA-ATAKPITGLKERIAGKEGQIRHNLLGKRC 312
Query: 364 DFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLV 410
D S RTV+ PDP L++ E+ VP +A+ILT P V P N L +LV
Sbjct: 313 DQSGRTVVGPDPTLRLNELCVPKEMAEILTIPVHVTPFNRDALTQLV 359
Score = 51.2 bits (117), Expect = 2e-04
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 55 VLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAK 114
+ + MGT + NC+TC + EC GHFG+ L +PV + + IL+ IC C K
Sbjct: 43 IYSKFMGTIENGENCKTCDRDVWECPGHFGHFHLEVPVVNPIFINDACNILRCICFNCYK 102
Query: 115 VML 117
++
Sbjct: 103 FIV 105
>UniRef50_Q69X40 Cluster: DNA-directed RNA polymerase; n=6; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
subsp. japonica (Rice)
Length = 1748
Score = 215 bits (525), Expect = 6e-54
Identities = 141/366 (38%), Positives = 202/366 (55%), Gaps = 40/366 (10%)
Query: 746 LEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACF----RELHPTNAPLIMAQSG 801
L+ME + + G + L+ M SEL+++ K F R+ P N +M Q+G
Sbjct: 931 LQMEVEKIIRRNGESATVILDRNMSSELNTLTSKVNKKVFPYGLRKPFPGNCLSLMTQTG 990
Query: 802 SKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTP 861
+KG +N++Q+ + +GQQ L GKRVP ++LP F A GF+ + F TGL P
Sbjct: 991 AKGGLVNMTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTSSRAGGFIGDRFLTGLRP 1050
Query: 862 TEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGS 921
E++FH M GREGLVDTAVKT+ +GYLQR L+KSLE L + YD TVR+ G ++QF YG
Sbjct: 1051 QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKSLESLKVSYDHTVRDVDGSIIQFCYGE 1110
Query: 922 DGLD---PTYMEGKDRPV-DLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKT 977
DG+D ++++ K R + D R L DK+ L+ +G + E L
Sbjct: 1111 DGVDVLKTSFLDDKFRELSDNRRALLGKLDSHNDKHL-LLNPNGYISELPEKLI------ 1163
Query: 978 STDEFKNELLSFLKATAGRVRALRARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQRGV 1037
+ FLK+ R + RY + +L++ L+V KY +
Sbjct: 1164 ------ENAMEFLKSK----RNEKGRY-----------DIKEKELMKLLKV---KYISSL 1199
Query: 1038 IEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEII-NASRNISTPII 1096
++PG AVG +AAQSIGEP TQMTL TFH AG MN+T G+PR+KE++ AS ISTP +
Sbjct: 1200 VDPGEAVGVVAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLKELLMTASAKISTPFM 1259
Query: 1097 TAELMQ 1102
L++
Sbjct: 1260 KCPLLE 1265
Score = 213 bits (519), Expect = 3e-53
Identities = 168/524 (32%), Positives = 262/524 (50%), Gaps = 69/524 (13%)
Query: 240 LGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHL 299
L ++ K E L L V P RPS+ S + G E + S++ N + + +
Sbjct: 326 LSVSEKRRGYEMFFLKNLLVAPNRFRPSISSSL--GIMEHPQNVLLSKVQESNLALQQSI 383
Query: 300 ASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLS 359
A++ E+++ W LQ + + +S G+ + +K G+ Q L+ K+G R +
Sbjct: 384 AASNHMEVLRR-WMDLQRNVNVLYDSS-KGLS---KNEKNANGIRQLLEKKEGILRQKMM 438
Query: 360 GKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG 419
GKRV+++ R+VISPDP L + E+G+P A LTYPE+V P N + L+ + NG D+HPG
Sbjct: 439 GKRVNYACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPG 498
Query: 420 ANYVQQRGLKTKKYLKYGNREKIAQEL--------------KC---GDVVERHLVDGDVV 462
A + + K R IA+ L KC VV RHL DGDVV
Sbjct: 499 ATHYRDNNNMYKLQAAPPKRRAIAKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGDVV 558
Query: 463 LFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEA 521
L NRQP+LHK S+M H +V P ++T R + C+ YNADFDGDEMN+H PQ E +RAEA
Sbjct: 559 LVNRQPTLHKPSMMAHVVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEA 618
Query: 522 LILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSE 581
+ ++ + NK + PR+G+ + QD I G L+T+ DTF ++ E
Sbjct: 619 INIV---------------DANKQ-YIGPRSGDAVRGLIQDHIIGAVLLTKLDTFLSREE 662
Query: 582 AQQLA-ACLLA--------GPDATMRID-----MPPPAIIKPRKLWTGKQIFSLIM---- 623
QL +L+ G ++ +D PPAI KP+ LWTGKQ+ + I+
Sbjct: 663 YNQLVYGSVLSSTRRSGQFGKKISIIMDDDALEPVPPAIWKPKPLWTGKQVITTILNHVT 722
Query: 624 --RPNRRCEVKANLE-----TKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGT 676
RP E K +E + +N K + + + + ++EL+ G +DK+ G+
Sbjct: 723 KGRPPFTVEKKGRIEKEYLIPEERNGDKVKTINPSEQVLYVHDNELIKGMIDKAQFGN-- 780
Query: 677 KSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDV 720
I + + +G E A + +R+ + + GF+ G+ D+
Sbjct: 781 -YGIVHTVHELYGPETAGVLLSSFSRLFTMVLQLHGFTCGVDDL 823
Score = 61.7 bits (143), Expect = 1e-07
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 45 DGQRVPAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITI 104
D + P P G+LD MG C++CG C GHFG+I+L P+F+ F ++ +
Sbjct: 41 DAKNCPVPGGLLDPAMGPTNDTDTCKSCGQQSIRCPGHFGHIELAKPLFNPLLFMSLKNL 100
Query: 105 LQTICKECAKVML 117
LQ C C K L
Sbjct: 101 LQVTCFHCHKFRL 113
>UniRef50_UPI0000ECBC5B Cluster: UPI0000ECBC5B related cluster; n=2;
Gallus gallus|Rep: UPI0000ECBC5B UniRef100 entry -
Gallus gallus
Length = 522
Score = 212 bits (518), Expect = 4e-53
Identities = 158/432 (36%), Positives = 219/432 (50%), Gaps = 36/432 (8%)
Query: 507 MNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITG 566
MN H PQ E RAEA L A T + P++G+ L QD +
Sbjct: 1 MNAHFPQNELGRAEAYTL------AFT----------DEQYLVPKDGKPLPGLIQDHMIS 44
Query: 567 GYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPN 626
G +T R FFT+ + +L L D RI PPAI+KP++LWTGKQ+ S ++ N
Sbjct: 45 GVSMTIRGCFFTREQYMELVYRGLT--DKKGRIKTFPPAIMKPQRLWTGKQVVSTLLI-N 101
Query: 627 RRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLR 686
E L GK G K ++ VIIR+ EL+CG +DK+ GS + +
Sbjct: 102 IIPENHVPLNLTGKAKIGGK-AWGKNEKVIIRSGELLCGVLDKAHFGSSAYGLV-HCCYE 159
Query: 687 DWGEEYAVRGMWRLARMASYYMMNRGFSFGIID--VTP----GKKLIEAKNKLLESGYSK 740
+G E + + + L R+ + Y+ F G + P G+ L + +G S+
Sbjct: 160 IYGGETSGKVLPCLGRLFTAYLQLYRFKRGQYGQLLRPRFHHGQILYARRQGADAAGDSE 219
Query: 741 CDGYILEMEKGTLQCQPGCTMEETLEAVMLS---ELSSIRELAAKACFR-ELH---PTNA 793
E +G Q C + V L E+++ K C LH P N
Sbjct: 220 TSS--CEDVQGKWQDAHLCKDQRDFNMVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPENN 277
Query: 794 PLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVEN 853
+M QSG+KGS +N Q+ +GQ L G+R P +SLP F+ + P++ GFV
Sbjct: 278 LQLMVQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTG 337
Query: 854 SFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGE 913
F TG+ P+EFFFH M GREGLVDTAVKT+ +GYLQR ++K LE LV+QYD+TVR++ G
Sbjct: 338 RFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGS 397
Query: 914 VVQFRYGSDGLD 925
VVQF YG DGLD
Sbjct: 398 VVQFLYGEDGLD 409
Score = 40.3 bits (90), Expect = 0.31
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 1015 ERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEP 1055
E + + + R + + K+QR + +PG AVG LAAQSIGEP
Sbjct: 481 ETVEIRKSFRLKDLLYLKWQRSLCDPGEAVGLLAAQSIGEP 521
>UniRef50_Q2TUP1 Cluster: DNA-directed RNA polymerase; n=8;
Spermatophyta|Rep: DNA-directed RNA polymerase - Zamia
muricata
Length = 551
Score = 212 bits (517), Expect = 6e-53
Identities = 175/588 (29%), Positives = 274/588 (46%), Gaps = 77/588 (13%)
Query: 507 MNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITG 566
MN+H PQ E +RAEA ++ ++ EQ + P +G+ + QD +
Sbjct: 1 MNVHFPQDEISRAEAYNIVNAN------------EQ----YIVPTSGDPIRGLIQDHVVS 44
Query: 567 GYLITQRDTFFTKSEAQQL--AACLLAGPDATMRI-DMP--------------PPAIIKP 609
L+T+RDTF TK + Q L +AC+ P R P PPAI KP
Sbjct: 45 ATLLTKRDTFLTKDDYQHLVYSACVSTTPPVFQRAKSCPKIGIVKDDYSFLSLPPAIWKP 104
Query: 610 RKLWTGKQIFSLIMRPNRRCEVKANLETKGK---NYTGNKDLCVQDSYVIIRNSELVCGS 666
+ LWTGKQ+ + ++ + ++ GK +Y G + +I+N+EL+CG
Sbjct: 105 QPLWTGKQVITTVLNYVTKGHPPFTMKKAGKVPGDYWGKSS---GELKAVIQNNELICGV 161
Query: 667 MDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVT----- 721
+DK+ G K + + + +G A + +R+ + Y+ GF+ G+ D+
Sbjct: 162 IDKAQFG---KYGLVHTVQELYGAGTAGHLLSVFSRLFTGYLQMHGFTCGVADLLLVPQA 218
Query: 722 --PGKKLIEAKNKLLESGYSK---CDGYILEMEKGTLQCQP-----GCTMEETLEAVMLS 771
+K +E L +S +S+ DG E E + G L+ +M S
Sbjct: 219 EDDREKKLEKSETLGDSVHSQFIGADGDQREFEGMEEDIEKHLRSKGEVASSRLDRLMSS 278
Query: 772 ELSSIRELAAKACFRE----LHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVP 827
L+ + F + P+N +M +G+KG +N +Q+ + +GQQ L GKRVP
Sbjct: 279 ALNRLTSDVNNGLFPKGLLKPFPSNCLSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVP 338
Query: 828 NGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGY 887
++LP F A GF+ + F TGL P E++FH M GR+GLVDTA+KT+ +GY
Sbjct: 339 RMVSGKTLPCFPPWDSRARAGGFIGDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGY 398
Query: 888 LQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRA 947
LQR L+K+LE L + YD TVR++ G V+QF YG DGLD K + +VLA R
Sbjct: 399 LQRCLIKNLECLKVHYDYTVRDSDGSVIQFTYGEDGLDVM----KTSCLTEFKVLAANRE 454
Query: 948 KCQDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYAGC 1007
K E E ++ + +A +++ +
Sbjct: 455 LVSQKLGES-------KFMETNCQYSNYSNKERPLNGYMEELPEAFENKLQTFFNGLSKQ 507
Query: 1008 GRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEP 1055
R +L+L + + RFL + KY + +PG +VG +A QSIGEP
Sbjct: 508 KRKSLKLRKQS-----RFLNLMRLKYISSLAQPGESVGVIAGQSIGEP 550
>UniRef50_Q7SXQ2 Cluster: DNA-directed RNA polymerase; n=11;
Eumetazoa|Rep: DNA-directed RNA polymerase - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 810
Score = 210 bits (514), Expect = 1e-52
Identities = 152/436 (34%), Positives = 232/436 (53%), Gaps = 52/436 (11%)
Query: 312 WDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVI 371
W +LQ + +S+M + + K PG + Q L+ K+G FR ++ GKRVD+++R+VI
Sbjct: 385 WIHLQSLVNIVFDSDMDKL---ITEKFPG--VRQLLEKKEGLFRKHMMGKRVDYAARSVI 439
Query: 372 SPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGAN-YVQQRGLKT 430
PD + E+G+P+ A LTYP+ V P N++ +R+ V NGP++HPGA V + G +T
Sbjct: 440 CPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPGATMVVNEDGSRT 499
Query: 431 -KKYLKYGNREKIAQEL---KCGD------VVERHLVDGDVVLFNRQPSLHKLSIMCHRA 480
RE +A++L G +V RH+ +GDV+L NRQP+LH+ SI H A
Sbjct: 500 ILSSTNQTQREAVAKQLLTPSTGQHRIPMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHCA 559
Query: 481 KVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVS 539
++ P ++ R + C YNADFDGDEMN H PQ+E +RAEA L VS
Sbjct: 560 RILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAYTL-------------VS 606
Query: 540 LEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAG-PDATMR 598
+Q + P++G+ L QD + G +T R FFT+ Q A + G D R
Sbjct: 607 TDQ---QYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTR---DQYTALVYRGLTDKIGR 660
Query: 599 IDMPPPAIIKPRKLWTGKQIFS-LIMRPNRRCEVKANLETK----GKNYT--------GN 645
+ + PP +IKP LWTGKQ+ S L++ + NL K GK + G
Sbjct: 661 VKLLPPTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKAKIPGKAWVKESPRPVPGY 720
Query: 646 KDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARM-A 704
+ +S V+IR EL+ G +DK+ GS + + + +G E + + + LAR+
Sbjct: 721 VPESMCESQVVIRQGELLMGVLDKAHYGS-SAYGLVHCCYELYGGETSGKLLSCLARLFT 779
Query: 705 SYYMMNRGFSFGIIDV 720
+Y + RGF+ G+ D+
Sbjct: 780 AYLQLYRGFTLGVEDI 795
Score = 52.4 bits (120), Expect = 7e-05
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 5 QYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQ 64
Q+ + R++ ++F + S ++ + ++ IT N L D A +G+ D +G
Sbjct: 2 QFSKETPWRRLEGMSFGLFSADETRKLS-VKTIT-NPQLLDNVGNAAANGLYDLALGPAD 59
Query: 65 KDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPES 120
C TC + C GHFG+I+L LPV++ +F + +++ C C + P +
Sbjct: 60 NKEICSTCMQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHTLKCPRA 115
>UniRef50_Q1L5Y5 Cluster: DNA-directed RNA polymerase; n=4;
Characeae|Rep: DNA-directed RNA polymerase - Chara
hispida
Length = 1144
Score = 206 bits (502), Expect = 4e-51
Identities = 170/566 (30%), Positives = 271/566 (47%), Gaps = 62/566 (10%)
Query: 79 CVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEMSYLL 138
C GHFGY++L +P++H + + ++ +L IC C+ L K+ R+ ++
Sbjct: 2 CEGHFGYLELAVPLYHPHFIKRVVWVLNKICFSCSS--LRRDAKECAPRQESTSRKDAIV 59
Query: 139 KKNLKAV-VHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKKVLMD 197
+ + V KA+ + + KK IGI V +K AK P+ K ++
Sbjct: 60 QYGCELCRVSNKAELITVSDFVDK-TADGKKVRIGIK--VKKKGAAKG--QPLNKHFWVN 114
Query: 198 FHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRL 257
+ + + L +SP E +I D +LG+ S P+ +ILT L
Sbjct: 115 LMAEGDHIAHTDGQVKNELF--LSPEEAKQKLSKISKRDCRVLGV----SDPQWMILTVL 168
Query: 258 PVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYL-- 315
PVPP+ +RP D D LT K EI+ N ++ R+ +L DYL
Sbjct: 169 PVPPVAVRPFGFGDQFGAKQVDLLTSKLKEIISQNRLVRRNKVEPNIVKLQNLVLDYLGS 228
Query: 316 QLH--AALYINSEMSGIPLAMQPKKPGRGL---VQRLKGKQGRFRGNLSGKRVDFSSRTV 370
QL+ + ++ + L++ + + + LK ++GR R N+SGKR + S+R+V
Sbjct: 229 QLNHLSGKVVHDDDGWRVLSLGGRLRSQMVDTTTDELKHRRGRMRENISGKRSNNSARSV 288
Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKT 430
I PD ++ ++EVGVP +A L E V NL+ +R L G Y++ R +
Sbjct: 289 IVPDASIGLEEVGVPRSMAGNLFVEESVTQWNLESMRCLQAKG--------YLKDRFFRA 340
Query: 431 KKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRF 490
+ + EK L GDVVER L DGD+++ NRQPSLH+ S++ RA + P F
Sbjct: 341 GEAMAM-RLEKEYTSLTIGDVVERKLSDGDIIVLNRQPSLHRHSVIAFRACIVPTSAFGI 399
Query: 491 NECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTP 550
N VC P+NADFDGDEMN+ +P + EA+AEA L+ ++R +V+
Sbjct: 400 NPVVCGPFNADFDGDEMNLFVPTSLEAQAEARQLL---------LLR-------KQVVSS 443
Query: 551 RNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACL-----LAGPDATMRIDMPPPA 605
++G +++ QD + +++T F + E QLA C G D+ I +P PA
Sbjct: 444 QDGRAIVSLRQDSLLAAHMLTSEYVFLNRQEVSQLAMCADEFGQPVGVDSRSTI-LPEPA 502
Query: 606 IIK----------PRKLWTGKQIFSL 621
I+K LWTG+Q+F +
Sbjct: 503 ILKWPAXKHQNGESSGLWTGQQVFGM 528
Score = 65.3 bits (152), Expect = 9e-09
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 848 RGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTV 907
RG ++ GLTP++FF H + R GL+ + + G LQR+L + LEDL L YD TV
Sbjct: 833 RGVIDRGLVEGLTPSQFFSHFIAERYGLLQKTGEIKDPGVLQRQLSRGLEDLTLAYDGTV 892
Query: 908 RNATGEVVQFRYGSDGLDPTYMEGKDRPV 936
R +VQF Y +GL G +PV
Sbjct: 893 RFGP-HIVQFEY--EGLSLKKTSGGSKPV 918
Score = 37.9 bits (84), Expect = 1.6
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 1035 RGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRN 1090
R +++ G +VGA+AAQ++G+P Q+ L H AG+ + + +++ ++N S+N
Sbjct: 923 RELVDFGDSVGAVAAQALGQPIQQLVLDAPHHAGLVGGPL---IKQLQAVLNLSKN 975
>UniRef50_A3BPR9 Cluster: DNA-directed RNA polymerase; n=7;
Magnoliophyta|Rep: DNA-directed RNA polymerase - Oryza
sativa subsp. japonica (Rice)
Length = 1507
Score = 200 bits (488), Expect = 2e-49
Identities = 92/160 (57%), Positives = 120/160 (75%)
Query: 773 LSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFED 832
L+ R+ A + + L +N M +GSKGS INISQM ACVGQQ + GKR+P GF D
Sbjct: 392 LNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFID 451
Query: 833 RSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRL 892
R+LPHF + P +RGFVENS+ GLTP EFFFH MGGRE L+DTAVKT+ETGY+QRRL
Sbjct: 452 RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRESLIDTAVKTSETGYIQRRL 511
Query: 893 VKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGK 932
VK++ED++++YD TVRN+ G+V+QF YG DG+D ++E +
Sbjct: 512 VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 551
Score = 190 bits (462), Expect = 3e-46
Identities = 114/331 (34%), Positives = 182/331 (54%), Gaps = 14/331 (4%)
Query: 50 PAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTIC 109
P P G+ D R+GT + CETC G+AEC GHFG+++L P+FH+G+ + +++I++ +C
Sbjct: 33 PKPGGLSDPRLGTIDRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVC 92
Query: 110 KECAKVMLPE-SLKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKK 168
C+K++ E K K NP K LK ++ K+ C + ++ ++
Sbjct: 93 FNCSKILADEDDTKFKQALKIRNP------KNRLKR-IYDACKSKKVCAGGDDLDVQEQQ 145
Query: 169 SSIGILKIVHEKYRAKKPTDPI-VKKVLMDFHEAKESNKEVAAMINSGLVKE-MSPLEVL 226
+ +K A++P + K++ +F K+ N + + K+ +S VL
Sbjct: 146 DTDEPVK-KRGGCGAQQPNITVDGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVL 204
Query: 227 NLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQS 286
N+ +RI DED LLG+N K +RP+ +IL LP+PP +RPSV+ D + +EDDLT + +
Sbjct: 205 NVLKRISDEDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMD-TSSRSEDDLTHQLA 263
Query: 287 EILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQ 345
I+ N+ + R + +I E LQ H A Y ++E+ G P A Q +P + +
Sbjct: 264 MIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICS 323
Query: 346 RLKGKQGRFRGNLSGKRVDFSSRTV-ISPDP 375
RLK K+GR RGNL GKRVDFS++ V P P
Sbjct: 324 RLKAKEGRIRGNLMGKRVDFSAQLVEYGPHP 354
Score = 89.0 bits (211), Expect = 7e-16
Identities = 46/116 (39%), Positives = 72/116 (62%), Gaps = 4/116 (3%)
Query: 1000 LRARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQM 1059
LR+ +A + L+ RLT + ++ + ++ PG +G +AAQSIGEP TQM
Sbjct: 693 LRSTFAS--KRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQM 750
Query: 1060 TLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIITAELMQPYD--QEFARRVK 1113
TL TFH+AGV++ N+T GVPR++EIIN ++ I TP ++ L + +E A+ V+
Sbjct: 751 TLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQ 806
>UniRef50_Q8MUU2 Cluster: DNA-directed RNA polymerase; n=4; Giardia
intestinalis|Rep: DNA-directed RNA polymerase - Giardia
lamblia (Giardia intestinalis)
Length = 2076
Score = 200 bits (488), Expect = 2e-49
Identities = 118/342 (34%), Positives = 193/342 (56%), Gaps = 23/342 (6%)
Query: 599 IDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGN--KDLCVQ-DSYV 655
+++ PAI P WTGKQ+FS+ + +G Y KD+ D Y+
Sbjct: 684 LNVSQPAICYPEARWTGKQVFSMFV-------------PRGVFYRSGDPKDISAHADKYI 730
Query: 656 IIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSF 715
+ ++CG + S +G GT+S++ +IL RD+G E + R+ +M++ GFS
Sbjct: 731 SFLDGSVMCGRIASSVVG-GTESALIHILFRDYGIEPCRAFIDNCQRVVCRFMLDHGFSV 789
Query: 716 GIIDVTPGKKLIEAKNKLLESGYSKCDGYILEME-KGTLQCQPGCTMEETLEAVMLSELS 774
G+ D+ + E K +++ SK + ++ ++ PG + + E ++S++S
Sbjct: 790 GMGDMVSSEHT-ERKVAEIQTKLSKDISELFKLSIHYKIKLAPGQSRNDAFEQEVISKVS 848
Query: 775 SIRELAAKACFRELHP-TNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFED- 832
LA + + P NA L+M +GSKG N+ Q+ + +GQQ L KR+P+ FE
Sbjct: 849 GT-SLALEKVITDAAPHRNALLVMINAGSKGKKFNMMQISSSLGQQFLQSKRMPHRFETH 907
Query: 833 RSLPHFERHSKIPA-ARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRR 891
RSLP + S + +RG++ NSF GL P EF+FH +GGREG+ DTAVKTA++GY++R+
Sbjct: 908 RSLPCYSPFSSLNMESRGYIFNSFIRGLNPAEFYFHAVGGREGVCDTAVKTADSGYVERK 967
Query: 892 LVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKD 933
L+K +E + +YD +VRN + E++ FRYG DG+DP E ++
Sbjct: 968 LLKVMESVCYRYDNSVRNDSNEIISFRYGDDGIDPHKSESRE 1009
Score = 176 bits (428), Expect = 3e-42
Identities = 155/494 (31%), Positives = 218/494 (44%), Gaps = 44/494 (8%)
Query: 64 QKDANCETCGLGLAE------CVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVML 117
Q++ C TC + C GH G ++ +FH + T++ C C +
Sbjct: 59 QEENECPTCSGKAGDQDPSVLCPGHLGVVKFGYDIFHPMIIDDLATLMNCFCPNCYHLKF 118
Query: 118 PESLKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIV 177
K++ R IN + K A+ + CE N + +K + G +
Sbjct: 119 FRLFKETDRELAINALNRLRDTTPTLNFLPKLAELSATIACCER-NILYRKKASGTSR-- 175
Query: 178 HEKYRAKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDI 237
P P++ V +S + A + M L R +DI
Sbjct: 176 ----NGVAP-QPLILAV-------SKSTRGSTARQAKDQDQLMDAHTCKLLITRYNKDDI 223
Query: 238 PLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLT-MKQSEILLINDVIA 296
LLG+ K E+ I++ + V +RPS+ +D T ED LT M S I D
Sbjct: 224 VLLGL--KRDHIENFIISSIQVGSRAVRPSIRTD--GTTAEDQLTEMYVSLFRNIRDCNN 279
Query: 297 RHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRG 356
L + G + ++ A G+ A P +G+ +RL GK GR R
Sbjct: 280 NSLNAGGGATGAKSQIGPNDIYNAYKTLISAKGLN-ADGGSVPTKGIFERLSGKYGRMRS 338
Query: 357 NLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDV 416
NL GKRV++ SR+VI+ DP + I E+GVP VA LT+PE V N +L +LV NG +
Sbjct: 339 NLMGKRVNYCSRSVITGDPTISINELGVPRSVASRLTFPEVVTARNRDFLMKLVSNG-NR 397
Query: 417 HPGA-------NYVQQRGLKTKKYLKYGNR---------EKIAQELKCGDVVERHLVDGD 460
+PGA VQ + +G+ E L G +V RHL+DGD
Sbjct: 398 YPGAVSKTLPSGTVQLIDTQVINSTGWGSSTDADGRLGGETTNDPLPLGTIVNRHLLDGD 457
Query: 461 VVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAE 520
VLFNRQP+LHK S M HR KV P T+R N + YNADFDGDEMN+H Q+ EA AE
Sbjct: 458 YVLFNRQPTLHKSSFMGHRVKVLPYSTYRLNLSATSSYNADFDGDEMNLHALQSLEAVAE 517
Query: 521 ALILMGSHNTAVTV 534
L N V+V
Sbjct: 518 ISELCMVSNQVVSV 531
Score = 70.5 bits (165), Expect = 3e-10
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 984 NELLSFLKATAGRVRAL-RARYAGC--GRAALQLERLTLTQLVRFLRVCHHKYQRGVIEP 1040
N+LLS +K+ + L R C ++ RLT QL R L K+ RG + P
Sbjct: 1227 NKLLSRIKSFRPKESTLFRVILRQCLSSKSCCYKYRLTSEQLDRILATIEEKFVRGQVSP 1286
Query: 1041 GTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN 1086
G VG LA S+ EP TQ+TL TFH AG +++ G+PR+KE+I+
Sbjct: 1287 GEPVGPLAGHSVSEPATQLTLNTFHTAGTSALG-GLGLPRLKELID 1331
>UniRef50_A1DYG9 Cluster: DNA-directed RNA polymerase; n=1; Hortaea
werneckii|Rep: DNA-directed RNA polymerase - Hortaea
werneckii
Length = 666
Score = 199 bits (485), Expect = 4e-49
Identities = 127/333 (38%), Positives = 177/333 (53%), Gaps = 37/333 (11%)
Query: 312 WDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVI 371
W LQ I+ + + + A + P G+ Q+L+ K+G FR + GKRV+F++RTVI
Sbjct: 348 WITLQDAVNSLIDRDRNPVQGAAAKRNP-EGIKQKLEKKEGMFRKYMMGKRVNFAARTVI 406
Query: 372 SPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTK 431
SPDPN++ E+GVP A LTYPE V N++ L+ V NGP V PGA ++ +
Sbjct: 407 SPDPNIETNEIGVPPVFAVKLTYPEPVTSWNVEELQEAVRNGPFVWPGAVAIESETGQVI 466
Query: 432 KYLKYGNREK--IAQELKC--------------GDVVERHLVDGDVVLFNRQPSLHKLSI 475
+ E+ +A +L V RHL +GD+V+ NRQP+LHK S+
Sbjct: 467 NLERKNAEERTALANQLLAPSSTIGAAGTRGTRNKKVHRHLNNGDIVIMNRQPTLHKPSM 526
Query: 476 MCHRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTV 534
MCHRA+V P ++T R + C YNADFDGDEMN+H PQ E AR+EAL
Sbjct: 527 MCHRARVLPGEKTLRMHYANCNTYNADFDGDEMNLHFPQNELARSEAL------------ 574
Query: 535 IIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLA--- 591
S+ ++ G L QD ++ G +T RDT F + E QL L
Sbjct: 575 ----SIADTDHQYLSSTAGNPLRGLIQDHVSMGVALTSRDTLFERGEYMQLLYSALRPEH 630
Query: 592 GPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMR 624
G A RI PPAI KP+ LWTGKQ+ + +++
Sbjct: 631 GHCAQGRIVTVPPAIFKPKMLWTGKQVVTSVLK 663
>UniRef50_Q26008 Cluster: DNA-directed RNA polymerase; n=2; Plasmodium
falciparum|Rep: DNA-directed RNA polymerase - Plasmodium
falciparum
Length = 2910
Score = 185 bits (450), Expect = 7e-45
Identities = 110/305 (36%), Positives = 163/305 (53%), Gaps = 10/305 (3%)
Query: 797 MAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFY 856
M +G+KGS +N S + + QQ L GKRVP ++LP F R+ + G + + F
Sbjct: 1812 MIFTGAKGSKVNYSMICGMLDQQYLEGKRVPRMRSGKTLPSFHRYDYGARSCGLITDCFL 1871
Query: 857 TGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQ 916
GL P E+FFH M GREGL+DTAVKTA++GY+QR L+K +E ++L YD TVRN ++Q
Sbjct: 1872 EGLRPQEYFFHCMSGREGLIDTAVKTAKSGYIQRCLIKCMESVILHYDGTVRNEDNSIIQ 1931
Query: 917 FRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKN--AEPLDGDGIVLAAEETLALDD 974
F YG DG+DP+ D DL +K + N ++ L+ + L E+ +D
Sbjct: 1932 FLYGEDGIDPSKTAYLDLSKDLLHNYHLSFSKYLNNNMHSKILNNQELFLKHEKD---ND 1988
Query: 975 FKTSTDEF--KNELLSFLKATAGRV-RALRARYAGCGRAALQLERLTLTQLVRFLRVCHH 1031
K + + K +++ + + + L + E + + +
Sbjct: 1989 TKDNEEPLISKYNPYTYIGSVSDKFNNKLNNTLLWNDLNFPEYENVPMNFDTLSSSLLKS 2048
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNI 1091
KY + PG ++G L AQS GEP TQMTL TFH AG + N+T G+PR+KEI S+
Sbjct: 2049 KYYNSLCNPGESIGILVAQSFGEPATQMTLNTFHLAG--TENVTMGIPRLKEIFLTSKLT 2106
Query: 1092 STPII 1096
S P+I
Sbjct: 2107 SKPMI 2111
Score = 168 bits (408), Expect = 9e-40
Identities = 102/256 (39%), Positives = 143/256 (55%), Gaps = 27/256 (10%)
Query: 345 QRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQ 404
Q L K+G R N+ GKRV+ +RTVISPD ++ ++G+P+ AK+LT E + N
Sbjct: 716 QILDKKEGILRKNIMGKRVNNCARTVISPDTFIETNQIGMPIEFAKVLTIDEYITQNNFT 775
Query: 405 WLRRLVCNGPDVHPGA-NYVQQRGLKTKKYLKYGNREKIAQEL-------KCGDVVERHL 456
++++L+ NGP+++PGA +Y G K KY +R K+ +++ + ++ RH
Sbjct: 776 YIKKLIENGPNIYPGALSYRDSNGRVFKLSHKYEDRLKVIEKIEKLNFQTENSYILHRHA 835
Query: 457 VDGDVVLFNRQPSLHKLSIMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTE 515
DGDVV+ NRQP+LHK SIM H K+ + ++ FR N C+ YNADFDGDEMN+HL QT
Sbjct: 836 RDGDVVIMNRQPTLHKFSIMAHYLKIFEKEKVFRLNYVNCSSYNADFDGDEMNLHLLQTP 895
Query: 516 EARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTP-RNGELLIAATQDFITGGYLITQRD 574
ARAEA LM N L T ++G L QDFI GG +T +
Sbjct: 896 LARAEATHLM-----------------NCDFLFTSFKDGSPLRGLAQDFILGGLHLTSLE 938
Query: 575 TFFTKSEAQQLAACLL 590
TF E L C L
Sbjct: 939 TFLNYDEYCNLLQCSL 954
Score = 42.7 bits (96), Expect = 0.058
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 57 DRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVM 116
D + GT + C C C GH G+I+ LP+F+ +++ + +L IC C
Sbjct: 55 DPKYGTIDHNQICSVCFERHENCTGHIGHIEFVLPLFNPLFYKELQELLNLICYRCYNFC 114
Query: 117 LPES----LKKSYRRKFIN 131
E LK ++ K +N
Sbjct: 115 CSEDVIFLLKHIFQLKSLN 133
>UniRef50_A6R8S3 Cluster: DNA-directed RNA polymerase; n=1;
Ajellomyces capsulatus NAm1|Rep: DNA-directed RNA
polymerase - Ajellomyces capsulatus NAm1
Length = 1573
Score = 185 bits (450), Expect = 7e-45
Identities = 129/355 (36%), Positives = 189/355 (53%), Gaps = 26/355 (7%)
Query: 596 TMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYT-GNK-DLCVQDS 653
T +I + PAI++PRKLWTGKQ+ S IM N E L GK+ T G++ ++
Sbjct: 603 TDKILLMKPAILRPRKLWTGKQVISTIMM-NITPERFYGLNLTGKSRTSGDRWGEGSEEG 661
Query: 654 YVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGF 713
VI R+ EL+CG +D + LG + + + + +G A + + L R+ + ++ R F
Sbjct: 662 QVIFRDGELLCGILDSAQLGP-SPGGLIHSVHEIYGHVVAGKLLGVLGRLLTKFLHMRAF 720
Query: 714 SFGIIDVTPGKKLIEAKNKLLESG----------YSKCDGYILEMEKGTLQCQPGCTMEE 763
+ GI D+ KK E + K L+ Y D E E+ L+ + + +
Sbjct: 721 TCGIDDLRLTKKGNEDRRKKLQEAEHIGRHVALKYVTLDQTKFEDEEAELKRRLEDALRD 780
Query: 764 T-----LEAVMLSELSSIRELAAKACF----RELHPTNAPLIMAQSGSKGSNINISQMIA 814
L+AV+ S+ + I AC + P N M SG+KGS +N + +I+
Sbjct: 781 DEKQAGLDAVLNSQAADISSDITAACLPVGLEKPFPWNQMQTMTTSGAKGSVVN-ANLIS 839
Query: 815 C-VGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGRE 873
C +GQQ L G+RVP ++LP F A GFV F TG+ P E++FH M GRE
Sbjct: 840 CNLGQQVLEGRRVPVMISGKTLPSFRPFDTNLMASGFVSGRFLTGIKPQEYYFHAMAGRE 899
Query: 874 GLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVR-NATGEVVQFRYGSDGLDPT 927
GL+DTAVKT+ +GYLQR L+K +E L +YD +VR A G V+QF YG DGL+ T
Sbjct: 900 GLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSVRETADGSVMQFLYGEDGLEIT 954
Score = 96.7 bits (230), Expect = 3e-18
Identities = 46/83 (55%), Positives = 60/83 (72%)
Query: 342 GLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPA 401
G+ QRL+ K G FR N+ GKRV+F++R+VISPDPN++ E+GVP+ AK LTYPE V
Sbjct: 467 GIKQRLEKKDGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNH 526
Query: 402 NLQWLRRLVCNGPDVHPGANYVQ 424
N L+ V NGPDV+PGA V+
Sbjct: 527 NYWELKNAVINGPDVYPGAAAVE 549
Score = 91.5 bits (217), Expect = 1e-16
Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 1025 FLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEI 1084
F RV + KY R V+EPG +VG +A QSIGEP TQMTL TFH AG ++ N+T G+PR++EI
Sbjct: 1061 FARVMNLKYMRSVVEPGESVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREI 1120
Query: 1085 I-NASRNISTPIITAELMQPYDQEFAR 1110
+ AS I TP +T L + ++ R
Sbjct: 1121 VMTASNQILTPTMTGVLRKELTEKDGR 1147
Score = 47.6 bits (108), Expect = 0.002
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 45 DGQRVPAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITI 104
D P P G+ D +G D C TC L C GH G+I+L + V++V +F + +
Sbjct: 40 DSLNNPVPGGLYDPALGA-WGDHICTTCRLNSWSCNGHAGHIELPVHVYNVTFFDQLFRL 98
Query: 105 LQTICKECAKVMLPESLKKSYRRK 128
L+ C C + + + SY K
Sbjct: 99 LRAQCVYCHRFRMSRADIMSYTCK 122
>UniRef50_Q83066 Cluster: DNA-directed RNA polymerase; n=3;
Lymphocystivirus|Rep: DNA-directed RNA polymerase - Fish
lymphocystis disease virus (FLDV)
Length = 1199
Score = 184 bits (448), Expect = 1e-44
Identities = 179/632 (28%), Positives = 293/632 (46%), Gaps = 104/632 (16%)
Query: 446 LKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGD 505
++ GD +ER L DGD V+ NRQP+LH+ S++ + + +T R N V +N DFDGD
Sbjct: 363 IEIGDTIERFLEDGDPVILNRQPTLHRNSMLGMKIVKKLGKTIRVNLAVTHGFNMDFDGD 422
Query: 506 EMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFIT 565
E N++LPQ+EEAR E LM K +++ + + I QD +
Sbjct: 423 EGNLYLPQSEEARFEVAELMNP----------------KKLIISNKYPQAEIFPVQDAVL 466
Query: 566 GGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRP 625
G YL+T+ + ++ CL A +D+ KP K +T + L++ P
Sbjct: 467 GAYLMTK----YPNMTQEEYFDCLTA-------LDL----FYKPVKQYTTINLIKLLL-P 510
Query: 626 NRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILL 685
N D C+ + + I N +++ G + TL K + Y+ L
Sbjct: 511 N--------------------DFCLDLTSLTIVNGQIITGFLTGKTL----KIIVQYLAL 546
Query: 686 RDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYI 745
++ E V + ++ + + +++N FS GI K +E K + ++ Y
Sbjct: 547 -EYPCEQVVYFIDQIQSLTNKWLLNHPFSVGI------KDCVELKCET----HTIIKNYY 595
Query: 746 LEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGS 805
++ K + +ET ++L+ S+++ A K + NA ++MA +GSKG
Sbjct: 596 IKANKAYNEAP--FFYKETAVGIVLN---SVKDAATKII--KTDENNAFVVMANAGSKGD 648
Query: 806 NINISQMIACVGQQALNGKRVPNGFED--RSLPHFER--HSKIPA--ARGFVENSFYTGL 859
N+ Q+ +GQQ +NG+R +D ++L + R I +RGFV + F GL
Sbjct: 649 CFNLVQIGGLLGQQYVNGQRPGYETDDDRKTLACYPRIVTDLIDKYESRGFVSSCFINGL 708
Query: 860 TPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRY 919
P E FFH GREG+++T+ T TGY +RR+VK E++++ YD +VR+A +VQF Y
Sbjct: 709 NPRECFFHAKSGREGMINTSQTTGVTGYAERRMVKLTENIIIAYDGSVRDAKNNIVQFIY 768
Query: 920 GSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTST 979
G+ G++P P+ R+ + G + L L FK
Sbjct: 769 GNHGMNPAKCFKTGIPLCFKRLAYKLNLN--------YTGPLTIPNYNNILELIFFKQLP 820
Query: 980 DEFKNELLSFLKATAGRVRALRARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQRGVIE 1039
+ + +L F + ++A ++A Q+ T+ VR Y +I+
Sbjct: 821 EPIQEYVLQFHR------NNIKAGAVLIPKSACQI----WTETVR------KAYVAAIID 864
Query: 1040 PGTAVGALAAQSIGEPGTQMTLKTFHFAGVAS 1071
PG AVG + AQ+IG TQ TL TFH AG S
Sbjct: 865 PGEAVGIICAQAIGAKQTQQTLNTFHKAGTLS 896
Score = 70.9 bits (166), Expect = 2e-10
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 15/154 (9%)
Query: 249 PEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELI 308
P +LILT+ PV P C RP + +DDL++ S+I+ +N+ + K
Sbjct: 152 PTNLILTKFPVLPPCCRP------QTPLVDDDLSVFLSQIVKLNNKL--------KLNYC 197
Query: 309 QEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSR 368
+ D L+L Y+++ G K G+ +RL K G R N+ GKR + ++R
Sbjct: 198 PQVADQLRLKILCYVDNS-KGKATHNTNHKAMTGIKERLSKKTGILRQNMMGKRRNQTAR 256
Query: 369 TVISPDPNLQIQEVGVPVHVAKILTYPERVFPAN 402
+V+ PD L++ EV +P +A LT P ++ P N
Sbjct: 257 SVVGPDTTLKLDEVAIPYEIANNLTIPIKITPFN 290
Score = 37.9 bits (84), Expect = 1.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 69 CETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKEC 112
C TC +C GHFG+I L +P+ + +++ + IL+ C C
Sbjct: 48 CPTCTKDSYQCPGHFGHINLAIPI--LIFYKEAVNILKKHCLNC 89
>UniRef50_Q4UI00 Cluster: DNA-directed RNA polymerase; n=2;
Theileria|Rep: DNA-directed RNA polymerase - Theileria
annulata
Length = 1999
Score = 181 bits (440), Expect = 1e-43
Identities = 112/281 (39%), Positives = 154/281 (54%), Gaps = 28/281 (9%)
Query: 313 DYLQLHAAL--YINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTV 370
DY L+ A+ I + + M P G+ Q ++ K G R N+ GKRV++S+RTV
Sbjct: 459 DYKDLNEAIRDQILNLQKKLSSYMDNGNPRPGVKQTMEHKTGTVRQNMLGKRVNYSARTV 518
Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLK- 429
I+PD + ++G+P+ A LT PE V N+ +LR+LV NGP V+PGA ++ K
Sbjct: 519 IAPDCFIDTNQMGMPLKFALELTVPEYVTKYNVNFLRKLVINGPKVYPGAKMLRDTNGKI 578
Query: 430 -TKKYLKYGNREKIAQELKCG-------DVVERHLVDGDVVLFNRQPSLHKLSIMCHRAK 481
L Y R A+ L G +V RH++DGDVVL NRQP+LHK IM H K
Sbjct: 579 YNLSALSYNERVAKAKLLLVGLSEGNATKIVYRHILDGDVVLMNRQPTLHKPGIMAHFVK 638
Query: 482 V-QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSL 540
+ Q+ FR N C+ YNADFDGDEMN+HLPQ +++EA ++ +
Sbjct: 639 ILTNQKIFRLNYVNCSTYNADFDGDEMNLHLPQDYLSQSEAQLIANA------------- 685
Query: 541 EQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSE 581
V P+NG+ + QD GG L+T RDTFFTKSE
Sbjct: 686 ---DCQFVVPKNGQPIRGLIQDHCQGGALLTSRDTFFTKSE 723
Score = 144 bits (349), Expect = 1e-32
Identities = 72/166 (43%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 760 TMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQ 819
T + + ++S SSI EL + P N M +G+KGS +N + + + QQ
Sbjct: 1155 TFDRFFQNNIVSVSSSINELVDSTVVK--FPKNGFATMVSTGAKGSKVNFAMISCALSQQ 1212
Query: 820 ALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTA 879
L GKRVP R+LP F A GF+ + F TGL P E+FFH M GREGLVDT
Sbjct: 1213 TLEGKRVPVMPSVRTLPCFAFGDFGSRAGGFISDRFLTGLRPQEYFFHCMSGREGLVDTC 1272
Query: 880 VKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
VKTA++GYLQR ++K++ED+++ YD TVR++ ++QF+YG DG+D
Sbjct: 1273 VKTAKSGYLQRCVLKAMEDIIVCYDSTVRDSNSNIIQFKYGEDGID 1318
Score = 80.2 bits (189), Expect = 3e-13
Identities = 36/84 (42%), Positives = 52/84 (61%)
Query: 1033 YQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNIS 1092
++R +PG AVG +A QSIGEP TQMTL TFH AG + N+T G+PR+ EI+ + + S
Sbjct: 1393 FERCKCDPGEAVGCIAGQSIGEPATQMTLNTFHLAGHGAANVTLGIPRLVEILQNTSHCS 1452
Query: 1093 TPIITAELMQPYDQEFARRVKGRI 1116
TP + ++ + E A + I
Sbjct: 1453 TPYFSVPILGKNEDEIAENAENAI 1476
Score = 45.2 bits (102), Expect = 0.011
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 55 VLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAK 114
+ D MG+ + C TC + C GH G+I ++P+FH + +L+T+C C +
Sbjct: 49 IYDPSMGSTEIYRLCSTCN-EMTNCDGHLGHISFSIPLFHPMMINTLCKLLKTVCFYCGR 107
>UniRef50_A2DXG8 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA
polymerase - Trichomonas vaginalis G3
Length = 594
Score = 175 bits (425), Expect = 8e-42
Identities = 117/267 (43%), Positives = 152/267 (56%), Gaps = 24/267 (8%)
Query: 290 LINDVIARHLASAGKCELIQEDWDYLQL------------HAALYIN-SEMSGIPLAMQP 336
++ D I H S+G E+I+ + + L+L H L N S + L
Sbjct: 273 VLGDKINAHPTSSGYVEVIKTNINLLKLLEKPDPDQIRAEHNKLQTNVSTLIDSTLNKSS 332
Query: 337 KKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPE 396
KK G+ Q L+ K+G FR NL GKRV+FS+R+VI+PDP + EVGVP AK L+YPE
Sbjct: 333 KKVPNGIRQVLEKKEGVFRKNLMGKRVNFSARSVIAPDPYVATDEVGVPEVFAKTLSYPE 392
Query: 397 RVFPANLQWLRRLVCNGPDVHPGAN-----YVQQRGLK-TKKYLKYGNREKIAQELKCGD 450
RV N + L + + NG D +PGAN Y Q LK K+ L+ KI E GD
Sbjct: 393 RVRDYNKERLSKAILNGADNYPGANLIIDPYGQTFQLKGMKESLRQSYASKIFAE-SDGD 451
Query: 451 ---VVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFDGDE 506
V RH ++GD VL NRQP+LH++SI+ R KV P QRT R + C +NADFDGDE
Sbjct: 452 FPWTVGRHAINGDYVLINRQPTLHRVSILAMRVKVLPKQRTIRMHYSNCASFNADFDGDE 511
Query: 507 MNMHLPQTEEARAEALILMGSHNTAVT 533
+N+HLPQ E ARAEA IL S +T
Sbjct: 512 INLHLPQNELARAEANILSLSSRHYIT 538
Score = 62.1 bits (144), Expect = 9e-08
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
V + I+ + F S I+ + + V +F D Q P GV D +G + D C
Sbjct: 5 VRQPITSIEFLPYSKEEIENFSVMPVTATGVF--DRQGKPIAEGVYDTHLGPTEHDQTCP 62
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESL 121
CG C GHFG I+L +PV+H Y + + + C EC + +P+ +
Sbjct: 63 ICGQHAWNCPGHFGNIKLAMPVYHPLYVKQLGRFMGGFCTECNCLRIPKEI 113
>UniRef50_Q7RJK4 Cluster: DNA-directed RNA polymerase; n=13;
Eukaryota|Rep: DNA-directed RNA polymerase - Plasmodium
yoelii yoelii
Length = 2594
Score = 173 bits (421), Expect = 2e-41
Identities = 110/288 (38%), Positives = 154/288 (53%), Gaps = 28/288 (9%)
Query: 315 LQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPD 374
LQL +++S + I +Q + + L K+G R N+ GKRV+ +RTVISPD
Sbjct: 580 LQLSVNTFLDSSL--IDKRLQKNMDNISIREILDKKEGILRKNIMGKRVNNCARTVISPD 637
Query: 375 PNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGA-NYVQQRGLKTKKY 433
++ ++GVP+ AK LT E + N +++++L+ NGPDV+PGA +Y +G K
Sbjct: 638 TFIETNQIGVPIEFAKTLTIDEHITENNFEYVKKLIENGPDVYPGALSYKDGQGRVFKLS 697
Query: 434 LKYGNR----EKIAQELKCGD----VVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV-QP 484
Y NR ++ L+ G V+ RH DGD+V+ NRQP+LHK SIM H K+ +
Sbjct: 698 HSYENRMNLISRLTHILQKGKHETLVLHRHARDGDIVIMNRQPTLHKFSIMAHFLKIFEK 757
Query: 485 QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNK 544
++ FR N C+ YNADFDGDEMN+HL QT ARAEA LM S +
Sbjct: 758 EKVFRLNYVNCSSYNADFDGDEMNLHLLQTPLARAEATHLMNSDFLFTSF---------- 807
Query: 545 SNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAG 592
++G L QDFI GG +T +TF E L C L G
Sbjct: 808 ------KDGSPLRGLAQDFILGGLHLTSLETFLNYDEYCNLLQCSLNG 849
Score = 144 bits (350), Expect = 1e-32
Identities = 69/148 (46%), Positives = 94/148 (63%)
Query: 791 TNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGF 850
TN M +G+KGS +N S + + QQ L GKRVP ++LP F R+ + G
Sbjct: 1560 TNGFSNMIFTGAKGSKVNYSMICGMLDQQYLEGKRVPRMRSGKTLPSFHRYDYGARSCGL 1619
Query: 851 VENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNA 910
+ + F GL P E+FFH M GREGL+DTAVKTA++GY+QR L+KS+E ++L YD TVRN
Sbjct: 1620 ITDCFLEGLRPQEYFFHCMSGREGLIDTAVKTAKSGYIQRCLIKSMESVILHYDGTVRNE 1679
Query: 911 TGEVVQFRYGSDGLDPTYMEGKDRPVDL 938
++QF YG DG+DP+ + P DL
Sbjct: 1680 DNSIIQFLYGEDGIDPSKTAYLNLPSDL 1707
Score = 71.7 bits (168), Expect = 1e-10
Identities = 34/65 (52%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNI 1091
KY + PG ++G L AQS GEP TQMTL TFH AG + N+T G+PR+KEI S+
Sbjct: 1826 KYFHSLCSPGESIGILVAQSFGEPATQMTLNTFHLAG--TENVTMGIPRLKEIFLTSKLT 1883
Query: 1092 STPII 1096
S P+I
Sbjct: 1884 SKPMI 1888
Score = 48.0 bits (109), Expect = 0.002
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 57 DRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVM 116
D R GT C C C+GH G+I+ LPVF+ +++ + +L +C C +
Sbjct: 55 DPRFGTIDYTQICSVCFEKHDSCLGHIGHIEFVLPVFNPLFYKDLQELLNLVCYNCYALC 114
Query: 117 LPES----LKKSYRRKFINPEMS---YLLKKN 141
E LK Y+ K +N S +++KKN
Sbjct: 115 YSEDVIFLLKHIYQLKSLNEIESSNKFIIKKN 146
>UniRef50_A5KB21 Cluster: DNA-directed RNA polymerase; n=1;
Plasmodium vivax|Rep: DNA-directed RNA polymerase -
Plasmodium vivax
Length = 2695
Score = 173 bits (421), Expect = 2e-41
Identities = 118/322 (36%), Positives = 170/322 (52%), Gaps = 30/322 (9%)
Query: 280 DLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSG-IPLAMQPKK 338
DL + +EI I+ + + L K I + LQ+ + +S + +P A K
Sbjct: 530 DLMDEDTEITKIDFLRSYDLIYRNKSAYINILFSNLQVALNTFFDSTFAAHLPNA---KM 586
Query: 339 PGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERV 398
+G+ + L K+G R N+ GKRV+ +RTVISPD ++ ++GVP+ AK LT E +
Sbjct: 587 SNQGVREILDKKEGILRKNIMGKRVNNCARTVISPDTFIETNQIGVPLEFAKKLTMDECI 646
Query: 399 FPANLQWLRRLVCNGPDVHPGA-NYVQQRG----LKT---KKYLKYGNREKIAQELKCGD 450
N +++RL+ NGPD++PGA +Y RG L T K+ L E++ + +C
Sbjct: 647 TENNFDYVKRLILNGPDIYPGALSYRDSRGNVFKLSTDYEKRVLLIKQLERMNLKKQCTT 706
Query: 451 -VVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEMN 508
V+ RH DGD+V+ NRQP+LHK SIM H K+ + ++ FR N C+ YNADFDGDEMN
Sbjct: 707 LVLHRHARDGDIVIMNRQPTLHKFSIMAHFIKIFEREKVFRLNYVNCSSYNADFDGDEMN 766
Query: 509 MHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGY 568
+HL QT AR+EA LM S + ++G L QDFI GG
Sbjct: 767 LHLLQTAHARSEATHLMNSDFLFTSF----------------KDGSPLRGLAQDFILGGL 810
Query: 569 LITQRDTFFTKSEAQQLAACLL 590
+T +TF E L C L
Sbjct: 811 HLTSLETFLNYDEYCNLLQCAL 832
Score = 142 bits (343), Expect = 7e-32
Identities = 67/142 (47%), Positives = 91/142 (64%)
Query: 797 MAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFY 856
M +G+KGS +N + + + QQ L GKRVP ++LP F R+ A G + + F
Sbjct: 1544 MIFTGAKGSKVNYAMICGMLDQQYLEGKRVPRMRSGKTLPSFHRYDYGARACGLITDCFL 1603
Query: 857 TGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQ 916
GL P E+FFH M GREGL+DTAVKTA++GY+QR L+K +E ++L YD TVRN +VQ
Sbjct: 1604 EGLRPQEYFFHCMSGREGLIDTAVKTAKSGYIQRCLIKCMESVILHYDGTVRNEDNAIVQ 1663
Query: 917 FRYGSDGLDPTYMEGKDRPVDL 938
F YG DG+DP+ + D DL
Sbjct: 1664 FLYGEDGIDPSRISYLDSSRDL 1685
Score = 74.5 bits (175), Expect = 2e-11
Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNI 1091
KY R + +PG ++G L AQS GEP TQMTL TFH AG + N+T G+PR+KEI S+
Sbjct: 1798 KYFRSLCDPGESIGILVAQSFGEPATQMTLNTFHLAG--TENVTMGIPRLKEIFLTSKLT 1855
Query: 1092 STPII 1096
S P+I
Sbjct: 1856 SKPMI 1860
Score = 45.2 bits (102), Expect = 0.011
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 57 DRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVM 116
D + GT C C CVGH G+++ +LP+F+ +++ + +L +C +C +V
Sbjct: 55 DPKYGTIDYRQICSVCFERHENCVGHIGHLEFSLPLFNPLFYKDLCELLGLVCLDCFQVC 114
Query: 117 LPES----LKKSYRRKFIN 131
E LK Y+ + +N
Sbjct: 115 CSEDTIFLLKHIYQLRALN 133
>UniRef50_A7ARZ5 Cluster: DNA directed RNA polymerase; n=1; Babesia
bovis|Rep: DNA directed RNA polymerase - Babesia bovis
Length = 2016
Score = 171 bits (416), Expect = 1e-40
Identities = 106/275 (38%), Positives = 150/275 (54%), Gaps = 29/275 (10%)
Query: 315 LQLHAALYINSEMSGIPLAMQ-PKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISP 373
LQ +LY +S +G + + P++PG + Q L+ K+G R N+ GKRV++++RTVI+P
Sbjct: 495 LQRKVSLYTDSSKTGSTINSKLPQRPG--IKQSLEHKEGAVRHNMLGKRVNYAARTVIAP 552
Query: 374 DPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKY 433
D L ++G+P+ A LT PE V N+ LR+L+ NGP ++PGAN+ + K
Sbjct: 553 DCFLDSNQMGIPLMFATELTVPENVTSYNVNMLRKLLINGPRIYPGANFYRDEYGKLYNL 612
Query: 434 LKYG-NREKIAQELKCGD--------VVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV-Q 483
N K +L D VV RH++DGDVVL NRQP+LHK IM H +V
Sbjct: 613 GTLSINERKAKAKLLLTDISDGRQPRVVYRHVLDGDVVLMNRQPTLHKPGIMAHFVRVLT 672
Query: 484 PQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQN 543
Q+ FR N C YNADFDGDEMN+HLPQ A++EA I+ +
Sbjct: 673 NQKIFRLNYVNCNTYNADFDGDEMNLHLPQDPLAQSEAQIIANA---------------- 716
Query: 544 KSNLVTPRNGELLIAATQDFITGGYLITQRDTFFT 578
P++G+ + QD GG +T +DTF T
Sbjct: 717 DCQFTVPKDGQPIRGLIQDHCLGGAYLTSKDTFLT 751
Score = 142 bits (343), Expect = 7e-32
Identities = 69/149 (46%), Positives = 95/149 (63%)
Query: 790 PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARG 849
P N M +G+KGS +N S + + + QQ+L G+RVP R+LP F A G
Sbjct: 1198 PQNGFASMVLTGAKGSKVNFSMICSILAQQSLEGRRVPVMPSVRTLPSFAFGDLGARAGG 1257
Query: 850 FVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRN 909
F+ + F TGL P E+FFH M GREGLVDT VKTA++GYLQR ++K++ED++ YD TVR+
Sbjct: 1258 FITDRFLTGLRPQEYFFHCMSGREGLVDTCVKTAKSGYLQRCILKAMEDVICCYDATVRS 1317
Query: 910 ATGEVVQFRYGSDGLDPTYMEGKDRPVDL 938
+ G ++QF YG DG+D RP D+
Sbjct: 1318 SDGTIIQFSYGEDGIDVQKSAYLKRPNDV 1346
Score = 84.2 bits (199), Expect = 2e-14
Identities = 38/84 (45%), Positives = 52/84 (61%)
Query: 1030 HHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASR 1089
+ Y+R EPG AVG +A QSIGEP TQMTL TFH AG + N+T G+PR+ E++ +
Sbjct: 1386 YRHYKRSQCEPGEAVGCIAGQSIGEPATQMTLNTFHLAGHGATNVTLGIPRLVELMQTTG 1445
Query: 1090 NISTPIITAELMQPYDQEFARRVK 1113
+ STP +A L+ D A +
Sbjct: 1446 SASTPYFSAPLLGDSDDNIAHNAQ 1469
Score = 47.2 bits (107), Expect = 0.003
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 19/90 (21%)
Query: 604 PAIIKPRKLWTGKQIFSLIM-------------------RPNRRCEVKANLETKGKNYTG 644
PAI+ P++LWTGKQ+ + ++ R + + + +T G + G
Sbjct: 824 PAILFPQRLWTGKQVITTLLKTIVDGIAKGLHMTDVNFLRTYKGINLYSKSKTPGDAWGG 883
Query: 645 NKDLCVQDSYVIIRNSELVCGSMDKSTLGS 674
D C ++S +IIRNSEL+ G +DKS G+
Sbjct: 884 ANDGCKEESIIIIRNSELLQGVLDKSQFGA 913
Score = 46.8 bits (106), Expect = 0.004
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 8 ETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDA 67
ET V ++ ++F S I+ + E+ + GQ P + D +G +
Sbjct: 5 ETTVSTEVCGLSFEFLSSDAIRALSASEIGNPS---HHGQECAGPSCIHDSALGPSDLCN 61
Query: 68 NCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVML 117
C TC +A C GH G++ +P++H ++ +L++ C C K+ L
Sbjct: 62 ICSTCQ-DVAACDGHLGHVNFPVPIYHPLLMPRLVKLLKSTCLYCRKLKL 110
>UniRef50_A5BZZ3 Cluster: DNA-directed RNA polymerase; n=1; Vitis
vinifera|Rep: DNA-directed RNA polymerase - Vitis
vinifera (Grape)
Length = 1393
Score = 166 bits (404), Expect = 3e-39
Identities = 223/915 (24%), Positives = 385/915 (42%), Gaps = 128/915 (13%)
Query: 48 RVPAPHGVLDRRMGTNQKDANCETCGL-GLAECVGHFGYIQLTLPVFHVGYFRAIITILQ 106
++ A + + D ++G C TCG +C GHFG I+ + H + ++ IL
Sbjct: 36 KIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILN 95
Query: 107 TICKECAKVMLPESLK--KSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAING 164
IC C + +K S R+ + Y + K K SK
Sbjct: 96 KICPGCKSTRQGQWVKGADSGSRRLRSKGCKYCAANSNDWYPTMKFKVSSK--------D 147
Query: 165 MVKKSSIGI-LKIVHEKYRAKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPL 223
+ +K++I + + K KK P++ DF +E N + +S
Sbjct: 148 LFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNR---RVLSHA 204
Query: 224 EVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTM 283
+V L + I I +SR + L LPV P R + ++ A +N L
Sbjct: 205 QVHYLLKDIDPGFIKEF-----VSRMDSFFLNCLPVTPNNHRVTEITH--ALSNGQTLIF 257
Query: 284 KQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGL 343
Q V R A+ C ++ D L+ A + SE K +
Sbjct: 258 DQHSRAYKKLVDFRGTANELSCRVL----DCLKTSKASNLRSE----------KSTSKDS 303
Query: 344 VQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANL 403
++ G + + L GKR + S R ++ DP L++ E+G+P H+A+ L E + N
Sbjct: 304 ASKMSGLKW-IKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNW 362
Query: 404 QWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVL 463
+ + CN + G YV+++G T ++ N + + GD++ R L DGD+VL
Sbjct: 363 EKVTN-GCNLRLLEKGQTYVRRKG--TLAPVRRMN------DFQAGDIIYRPLTDGDIVL 413
Query: 464 FNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEAL 522
NR PS+H+ S++ KV P N C+P+ DFDGD ++ ++PQ+ ++R E
Sbjct: 414 INRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELS 473
Query: 523 ILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEA 582
L V+L + L+ ++G L++ +QD ++ +L+ + +
Sbjct: 474 EL-------------VALNR---QLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQM 517
Query: 583 QQLAACLLAGPDATMRIDMPPPAIIK----PRKLWTGKQIFSLIMRPNRRCEVKANLETK 638
QQL + + PAIIK ++WTGKQ+FS+++ P N
Sbjct: 518 QQL--------EMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLN---- 565
Query: 639 GKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLG--SGTKSSIFYILLRDWGEEYAVRG 696
G + + + D +R+ + G++ S + G Y E ++RG
Sbjct: 566 GVRISDGELISSSDGSAWLRD---IDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRG 622
Query: 697 MWRLARMASYYMMNRGFS-FGIID-VTPG----------KKLI--EAKNKLLESGYSKCD 742
+ ++ Y+ + S +ID V G K+L+ ++N L+ SG + +
Sbjct: 623 L--SVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQN 680
Query: 743 GYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGS 802
G + +++ + Q + ++ + I+ L ++ + N+ L M ++GS
Sbjct: 681 GVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLV----YQYANKDNSLLAMLKAGS 736
Query: 803 KGSNINISQMIACVGQQ-----------------ALNGKRVPNGFEDRSLPHFERHSKIP 845
KG+ + + Q C+G Q A N ++VP ++ + + E S IP
Sbjct: 737 KGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQNDTSEYAE--SYIP 794
Query: 846 AARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDM 905
A VENSF GL P E F H++ R+ G L RRL+ + DL + YD
Sbjct: 795 YA--VVENSFLMGLNPLECFVHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLYIAYDG 850
Query: 906 TVRNATG-EVVQFRY 919
TVRNA G ++VQF Y
Sbjct: 851 TVRNAYGNQLVQFSY 865
>UniRef50_A3FQH3 Cluster: DNA-directed RNA polymerase; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum Iowa II
Length = 1805
Score = 163 bits (395), Expect = 3e-38
Identities = 101/264 (38%), Positives = 137/264 (51%), Gaps = 31/264 (11%)
Query: 333 AMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKIL 392
+ +P G+ Q L+ K G R + GKRV++S+RTVI PDP L E+GVP+ A L
Sbjct: 453 SFKPSSAPPGIRQWLEKKAGVIRQKMMGKRVNYSARTVIGPDPYLDTNEIGVPLMFALNL 512
Query: 393 TYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDV- 451
T PERV N+ + LV NGP+++PGAN + G+ N+ K L V
Sbjct: 513 TIPERVGTHNVSLMANLVENGPNLYPGANKLLLGGILYDLSRLDQNQRKAKARLLLSSVL 572
Query: 452 -------------VERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQ-RTFRFNECVCTP 497
V RHL+DGD+VL NRQP+LH+ SIM H ++QP+ R N C
Sbjct: 573 SASNPFLGNHHPIVYRHLIDGDIVLMNRQPTLHRPSIMAHYIRIQPKDNIMRLNYVNCGT 632
Query: 498 YNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLI 557
YNADFDGDEMN+HLPQ+ +R+EA +M + P++GE L
Sbjct: 633 YNADFDGDEMNLHLPQSLFSRSEAKYIMDA----------------SRQYSVPKSGEPLR 676
Query: 558 AATQDFITGGYLITQRDTFFTKSE 581
QD GG +T + TF + E
Sbjct: 677 GLIQDSCIGGAFLTSKSTFLNREE 700
Score = 130 bits (314), Expect = 2e-28
Identities = 66/151 (43%), Positives = 90/151 (59%)
Query: 790 PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARG 849
P N M +G+KGS +N + + +GQQ L G+RVP ++LP F + A G
Sbjct: 1246 PYNGFSSMVLTGAKGSRVNYNMICVMLGQQELEGRRVPIMPSMKTLPSFATYDLGSRAGG 1305
Query: 850 FVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRN 909
+ + + GL EFFFH M GREGLVDTAVKTA +GYLQR ++K LE +++ YD TVR+
Sbjct: 1306 LITDRYLDGLHAQEFFFHCMSGREGLVDTAVKTARSGYLQRCILKGLESMIVNYDGTVRS 1365
Query: 910 ATGEVVQFRYGSDGLDPTYMEGKDRPVDLAR 940
+VQF YG DG+D + + DL R
Sbjct: 1366 EDDTIVQFIYGDDGIDVSKSSYLSKLEDLVR 1396
Score = 83.0 bits (196), Expect = 4e-14
Identities = 38/71 (53%), Positives = 48/71 (67%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNI 1091
KY + I PG AVG LAAQSIGEP TQMTL TFH AG + N+T G+PR+KE++ +
Sbjct: 1569 KYMKTQISPGEAVGCLAAQSIGEPATQMTLNTFHLAGHGAANVTLGIPRLKELLQTGGDS 1628
Query: 1092 STPIITAELMQ 1102
TP I L++
Sbjct: 1629 KTPYIFIPLLK 1639
Score = 58.4 bits (135), Expect = 1e-06
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 13/132 (9%)
Query: 601 MPPPAIIKPRKLWTGKQIFSLIMRP------NRRCEVKANLE------TKGKNYTGNKDL 648
+ PP IIKP LWTGKQ+F+ +++ + V A + T G ++ G +D
Sbjct: 819 LEPPTIIKPIHLWTGKQVFTSLLKTLLYNLVSTEPSVYAGINLISKSRTPGDSWNGKEDG 878
Query: 649 CVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYM 708
+++ VIIRNSEL+ G +DK+ +GS + + ++ G + + + ++ Y+
Sbjct: 879 EKEEAVVIIRNSELLQGVIDKNQIGSNS-YCLVHLCTELVGPLIGGKLLSAIFNLSQVYL 937
Query: 709 MNRGFSFGIIDV 720
RGF+ I D+
Sbjct: 938 QMRGFTCSISDM 949
Score = 56.8 bits (131), Expect = 3e-06
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 54 GVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECA 113
G+ D RMG C TCG EC GH G+I+L LPVFH + ++ IL+ C C
Sbjct: 47 GLHDLRMGPLSNRDFCGTCG-SRNECPGHIGHIELELPVFHPLFLGNLVRILKCCCWHCC 105
Query: 114 KVMLPESLKKSYRRKF 129
+ L + + Y ++F
Sbjct: 106 CIRLSKKVCNGYVKRF 121
>UniRef50_Q4D133 Cluster: DNA-directed RNA polymerase; n=7;
Trypanosomatidae|Rep: DNA-directed RNA polymerase -
Trypanosoma cruzi
Length = 1802
Score = 159 bits (387), Expect = 3e-37
Identities = 108/295 (36%), Positives = 165/295 (55%), Gaps = 36/295 (12%)
Query: 350 KQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVF---PANLQWL 406
K+G FR N+ GKRV+ + R+VISPD ++ EV +P A+ L++PE+V A + L
Sbjct: 469 KEGLFRMNMMGKRVNQACRSVISPDLMVEPNEVLLPRPFARNLSFPEQVTFYASARMNLL 528
Query: 407 RRLVCNGPDVHPGANYVQQRGLKTK-KYLKYG-----NREKIAQELKCGD-----VVERH 455
+R V NGP +PGA +++ R + ++++ R+ A+ +V RH
Sbjct: 529 KRCVINGPRRYPGATHLEIRQTNGEIRFIELDVPEQTRRQHAARYFAMAQSGVTLIVYRH 588
Query: 456 LVDGDVVLFNRQPSLHKLSIMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEMNMHLPQT 514
++DGD V+FNRQP+LHK S+M ++ KV +T RF+ +NADFDGDEMN+H+PQ+
Sbjct: 589 ILDGDRVVFNRQPTLHKPSMMGYQVKVLSGHKTLRFHYVNGNSFNADFDGDEMNIHVPQS 648
Query: 515 EEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRD 574
EA+ E +LM ++ N + P +G+ + QD I G L+T RD
Sbjct: 649 LEAKVELDVLMDAN----------------LNYLVPTSGKPIRGLIQDHIAAGVLLTLRD 692
Query: 575 TFFTKSEAQQLAACLLA-----GPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMR 624
F + QLA LA + T+ +P PAI+ PR LWTGKQ+ S+++R
Sbjct: 693 KFLEHATFVQLAYYGLAPYLRQQHEITLSELIPLPAILWPRPLWTGKQLISVVIR 747
Score = 146 bits (354), Expect = 3e-33
Identities = 89/277 (32%), Positives = 147/277 (53%), Gaps = 17/277 (6%)
Query: 650 VQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMM 709
+ D ++ NSEL+ G M K+ LG+ + S I +I+ +G + L R+ S +
Sbjct: 797 MDDDALMFMNSELLMGLMCKNQLGASSMS-IAHIVHELYGPHKVGQLFGALGRILSQSLQ 855
Query: 710 NRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVM 769
GFS G+ D+ L++ + + + + ++++ L E + +
Sbjct: 856 REGFSIGMDDMC----LVQEERRYRQ---------LRQLDEAPLYLPDD---EAAVMTKI 899
Query: 770 LSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNG 829
+ + +++ P N L+M SG+KGSN N +QM +GQQ +G+RV
Sbjct: 900 MEYATKLQQEFIPGRMMVPFPRNHLLMMTASGAKGSNANATQMALGLGQQLFDGRRVKRM 959
Query: 830 FEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQ 889
++LP F H + + G+ F +G+ P E+ H M GR+GL+DTAVKT+ +G+LQ
Sbjct: 960 NSGKTLPAFFAHERRARSFGYAIGRFTSGIRPPEYTIHAMAGRDGLIDTAVKTSRSGHLQ 1019
Query: 890 RRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDP 926
R L+K LE LV+ +D +VR++ G +VQF YG DGLDP
Sbjct: 1020 RCLIKGLESLVVHWDHSVRDSNGSIVQFTYGGDGLDP 1056
Score = 70.5 bits (165), Expect = 3e-10
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 1039 EPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKE-IINASRNISTPIIT 1097
+PG VG LAAQ+ GEP TQMTL TFH AG ++T+G+PR++E +I+AS + I+
Sbjct: 1242 DPGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVTHVTEGIPRLRELLIHASVQKAAVIVP 1301
Query: 1098 AELMQPYDQEFARRV 1112
E P D+ R+
Sbjct: 1302 VEKATPVDESAIARI 1316
>UniRef50_A3A384 Cluster: DNA-directed RNA polymerase; n=2; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
subsp. japonica (Rice)
Length = 2056
Score = 159 bits (386), Expect = 4e-37
Identities = 194/740 (26%), Positives = 314/740 (42%), Gaps = 90/740 (12%)
Query: 218 KEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTN 277
+ + P E LN+ ++IP+E L +++ ++ LPVPP C+ +D ++ +
Sbjct: 218 RTLLPEEALNILKKIPEETKRKLAARGYIAQ-SGYVMKYLPVPPNCLYIPEFTDGQSIMS 276
Query: 278 EDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK 337
D ++L + I + A + E + + LQL A YI+ + G Q
Sbjct: 277 YDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIH--LRGTTRGPQDN 334
Query: 338 KPGRGLV---QRLKGKQG--RFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKIL 392
+ L KQ + R K FSSR+V++ DP + + +G+P VAK +
Sbjct: 335 TKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRI 394
Query: 393 TYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVV 452
T+ E+V NL L+ +V G + R + + G++ LK G +
Sbjct: 395 TFEEQVTDINLNRLQEIVDKGL-------CLTYRDGQATYAITVGSKGHTT--LKVGQTI 445
Query: 453 ERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLP 512
R +VDGDVV NR PS HK S+ R V T + N +C P+ ADFDGD ++++ P
Sbjct: 446 SRRIVDGDVVFLNRPPSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYP 505
Query: 513 QTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQ 572
Q+ A+AEAL L S+E+ L + +G++ + D + ++
Sbjct: 506 QSLAAKAEALELF-------------SVEK---QLTSSHSGKVNLQLVSDSLLALKHMSS 549
Query: 573 RDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVK 632
R T +K A QLA + +P PA+IK + WT QI V+
Sbjct: 550 R-TMLSKEAANQLAMLVTC--------SLPDPAVIKSKPYWTISQI------------VQ 588
Query: 633 ANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEY 692
L K L Q ++R+S ++ +DK ++ + + S + Y L G
Sbjct: 589 GALP---------KALTSQGDKHVVRDSTIIKLDLDKESVQT-SFSDLVYSTLSVKGPGE 638
Query: 693 AVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGT 752
A++ + L + ++ GFS + D K L+E K +E ILE
Sbjct: 639 ALQFLNVLQPLLMELILLDGFSVSLQDFNVPKVLLEEAQKNIEK-----QSLILE----- 688
Query: 753 LQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQM 812
Q + +E + + L I++ + + H LI +S S S + Q
Sbjct: 689 ---QSRFAENQVVEMRVDNNLKDIKQQISDFVVKRSH--LGLLIDPKSDSSVS--KVVQQ 741
Query: 813 IACVGQQAL-NGKRVPNGF-EDRSLPHFERHSKI-----PAARGFVENSFYTGLTPTEFF 865
+ VG Q GK ED +H + P A G V +S++ GL P E
Sbjct: 742 LGFVGLQLYREGKFYSRRLVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEEL 801
Query: 866 FHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGE-VVQFRY-GSDG 923
H + RE +V ++ E G L + L+ L D+V+ YD TVRN + ++Q Y D
Sbjct: 802 VHAISTREAIVRSSRGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDDA 861
Query: 924 LDPTYMEGKDRPVDLARVLA 943
LD G PV + A
Sbjct: 862 LDFPSAIGPGEPVGVLAATA 881
Score = 50.4 bits (115), Expect = 3e-04
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 60 MGTNQKDANCETCGLGL-AECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKV 115
+G + CE+CG +C GHFGYI+L +P++H + + IL +C +C +V
Sbjct: 49 LGLPLETGKCESCGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRV 105
>UniRef50_Q8R7U7 Cluster: DNA-directed RNA polymerase subunit beta';
n=22; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Thermoanaerobacter tengcongensis
Length = 1183
Score = 159 bits (386), Expect = 4e-37
Identities = 180/657 (27%), Positives = 291/657 (44%), Gaps = 88/657 (13%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
+RPE +IL LPV P +RP V D DL ++ N+ + + L
Sbjct: 221 NRPEWMILEVLPVIPPDLRPMVQLD-GGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDI 279
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ I++ G P+ +P + L LKGKQGRFR NL GKRVD+S
Sbjct: 280 IVRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYS 339
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI P L++ + G+P +A L P F ++RLV G H
Sbjct: 340 GRSVIVVGPELKVYQCGLPKEMALELFKP---FV-----MKRLVDKGLAQH--------- 382
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
+K+ K + E++ E+ DV+E ++ VL NR P+LH+L I + R
Sbjct: 383 -IKSAKRMV----ERVRPEV--WDVLE-EVIKEHPVLLNRAPTLHRLGIQAFEPVLVEGR 434
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
+ + VC YNADFDGD+M +H+P + EA+AEA LM + N N
Sbjct: 435 AIKLHPLVCPAYNADFDGDQMAVHIPLSMEAQAEARFLMLAAN----------------N 478
Query: 547 LVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAI 606
++ P++G+ ++ TQD + G Y +T D E + + + +A M + I
Sbjct: 479 ILKPQDGKPVMTPTQDMVLGCYYLT-ADEDGVPGEGKYFS----SPEEALMAYQLGYIHI 533
Query: 607 IKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGS 666
K+ ++I N + K T GK + QD + RN+ +
Sbjct: 534 HAKIKVKMTREI-------NGEKKSKVIETTVGKIIF--NEAIPQDLGFVDRNNPETAFN 584
Query: 667 MDKSTLGSGTK-SSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKK 725
++ + L +K I + R G + ++ + Y + + D+ K+
Sbjct: 585 LEINDLVDKSKLGKILDRVYRIHGPTKTAETLDKIKELGFKYSTKAAITISVSDMVIPKE 644
Query: 726 LIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACF 785
K KLL+ + D + ++E Q + G EE ++ + E +A
Sbjct: 645 ----KEKLLK----EADEMVAKIE---AQFRRGLISEEERYEKVIETWNMTTEKVTEALM 693
Query: 786 RELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIP 845
L N +MA SG++GS I Q+ G A P+G R ++P
Sbjct: 694 ATLDKFNPIFMMAHSGARGSKNQIRQLAGMRGLMA-----DPSG----------RIIELP 738
Query: 846 AARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
+ ++F GL EFF T G R+GL DTA++TA++GYL RRLV +D++++
Sbjct: 739 -----IRSNFREGLNVLEFFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVR 790
Score = 73.3 bits (172), Expect = 4e-11
Identities = 32/61 (52%), Positives = 46/61 (75%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPII 1096
++ G AVG +AAQ+IGEPGTQ+T++TFH GVA ++ITQG+PRV+E+ A + +I
Sbjct: 887 LVNIGEAVGIIAAQAIGEPGTQLTMRTFHTGGVAGVDITQGLPRVEELFEARKPKGLAVI 946
Query: 1097 T 1097
T
Sbjct: 947 T 947
>UniRef50_Q9AW39 Cluster: DNA-directed RNA polymerase; n=1;
Guillardia theta|Rep: DNA-directed RNA polymerase -
Guillardia theta (Cryptomonas phi)
Length = 1434
Score = 154 bits (374), Expect = 1e-35
Identities = 133/426 (31%), Positives = 203/426 (47%), Gaps = 40/426 (9%)
Query: 332 LAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKI 391
+ ++ KK + +L+ K G R N+ GKRV S+R+VI+PDP L+ EVGVP AK
Sbjct: 389 IQLKKKKIPNSIKNQLEKKSGLIRMNIMGKRVLNSARSVIAPDPFLKTFEVGVPKEFAKD 448
Query: 392 LTYPERVFPAN-----LQWLR-------RLVC---NGPDVHPGANYVQQRGLKTKKYLKY 436
L PE + N L +L+ +L+ NG + + K KY
Sbjct: 449 LYVPESINLINILKVFLDFLKIKNFKKKKLILEILNGNKISISQQDFLFKLKKISISYKY 508
Query: 437 GNREKIAQELKCG-DVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV-QPQRTFRFNECV 494
+ + K G + R+L D+ + NRQPSLHK SIM H+ ++ + + + +
Sbjct: 509 FKLFSLFSKNKYGFNKFLRNLKKNDISILNRQPSLHKTSIMAHKVRILKSSKCLKLHYSN 568
Query: 495 CTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGE 554
C YNADFDGDEMN+H+PQ + +E+L + N QN P NG
Sbjct: 569 CNSYNADFDGDEMNLHIPQNYLSISESLYIAYVTN------------QN----TIPSNGL 612
Query: 555 LLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWT 614
L QD I G L+T++DTFF K+ + + + + + + P+IIKP LWT
Sbjct: 613 PLRGLIQDQIISGVLLTKKDTFFNKNCIDIFLSNVFSNKERDI---LELPSIIKPNFLWT 669
Query: 615 GKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGS 674
GKQIFS++ + N+ + LETK K + + ++ ++ R L+ G +D S LG
Sbjct: 670 GKQIFSILCKTNKFKQRNFFLETKTK--LPSSIIGSDENRILFRKGILLKGVIDSSQLGR 727
Query: 675 GTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLL 734
K F+ ++G M RL+ S + + S + D K+ E K K +
Sbjct: 728 -NKFGFFHAFYENFGSVTGDTIMSRLSIFFSIFQVFYNHSCSLQDFFLKTKM-EKKLKNI 785
Query: 735 ESGYSK 740
YSK
Sbjct: 786 YKLYSK 791
Score = 128 bits (310), Expect = 7e-28
Identities = 58/136 (42%), Positives = 88/136 (64%)
Query: 788 LHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAA 847
++ +N L M GSKGSNIN+ Q+ +GQ L G +P F ++LP F +S P +
Sbjct: 865 INTSNGFLKMISYGSKGSNINLFQICLLLGQTELEGSCIPKTFTGKTLPGFLFNSLDPIS 924
Query: 848 RGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTV 907
GF+ F+TG+ P +FFH M GREGL+DTA+KT+++GY+QR ++K LE+L + YD T+
Sbjct: 925 NGFIPERFFTGIHPNCYFFHCMAGREGLLDTAIKTSQSGYIQRNIIKHLENLKINYDFTL 984
Query: 908 RNATGEVVQFRYGSDG 923
R + ++ F + DG
Sbjct: 985 RMSHNKINSFIFSDDG 1000
Score = 74.1 bits (174), Expect = 2e-11
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 1023 VRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVK 1082
V + + + Y +IEPG + G L Q+IGEP TQMTL TFH+AG S + QG+PR+K
Sbjct: 1068 VSYQNILNSNYFENLIEPGESTGILCGQAIGEPCTQMTLNTFHYAGKISSHGKQGLPRLK 1127
Query: 1083 E-IINASRNISTPIITAELMQPYDQEFARRVKGRICTSKL 1121
E ++ S+N + ++ L ++++ +VK KL
Sbjct: 1128 EMLLYNSKNSTNFLVNCRLKSIINRKYLEKVKRNFSNYKL 1167
Score = 50.8 bits (116), Expect = 2e-04
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
+KI + FN+D ++ + SA E+ + + DG + + D ++G N NC+ C
Sbjct: 18 KKIKYY-FNLDDKNIRKTSA--EIFSPLIKTSDGFILKG--ALFDNKLGVNSFYGNCDIC 72
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
L C GHFG+I L +PV + ++ +L C C +L E + I
Sbjct: 73 KLSYINCSGHFGHIDLLIPVPNPLTKNFLLFVLNLNCFYCKSTIL-EKWRTVTFNSLITV 131
Query: 133 EMSYLLKKNLKAVV--HKKAK 151
+ S KKN K ++ KK K
Sbjct: 132 KNS--TKKNRKPIIFFEKKVK 150
>UniRef50_UPI0000F1FC15 Cluster: PREDICTED: similar to polymerase
(RNA) I polypeptide A, 194kDa; n=1; Danio rerio|Rep:
PREDICTED: similar to polymerase (RNA) I polypeptide A,
194kDa - Danio rerio
Length = 1221
Score = 154 bits (373), Expect = 2e-35
Identities = 88/220 (40%), Positives = 124/220 (56%), Gaps = 6/220 (2%)
Query: 790 PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARG 849
P N +M QSG+KGS +N Q+ +GQ L G+R P +SLP F+ + P + G
Sbjct: 411 PENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGG 470
Query: 850 FVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRN 909
FV F TG+ P EFFFH M GREGLVDTAVKT+ +GYLQR ++K LE LV+QYD+TVR+
Sbjct: 471 FVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRD 530
Query: 910 ATGEVVQFRYGSDGLD---PTYMEGKDRPVDLARVLADVRAKCQDKNAEPLDGDGIVLAA 966
+ G VVQF YG DGLD +++ + P ++KC D+ +D V A
Sbjct: 531 SDGSVVQFLYGEDGLDIPKTQFLQPRQFPFIKDNYEVIRKSKCLDEVLAKMDP---VAAL 587
Query: 967 EETLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYAG 1006
A+ +K + +FL + ++ L+A+ G
Sbjct: 588 NHFKAIKKWKAKHEHASPRDGAFLLFSQKKMSKLKAQVEG 627
Score = 89.0 bits (211), Expect = 7e-16
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 1020 TQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 1079
T R + K+QR + +PG AVG +AAQSIGEP TQMTL TFHFAG MN+T G+P
Sbjct: 708 TDADRLRNLLQLKWQRALCDPGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIP 767
Query: 1080 RVKEI-INASRNISTPIIT 1097
R++EI + AS NI TP+++
Sbjct: 768 RLREILLVASSNIKTPMMS 786
Score = 50.4 bits (115), Expect = 3e-04
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 34 IEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVF 93
++ IT N L D A +G+ D +G C TC + C GHFG+I+L LPV+
Sbjct: 16 VKTIT-NPQLLDNVGNAAANGLYDLALGPADNKEICSTCMQDFSSCPGHFGHIELPLPVY 74
Query: 94 HVGYFRAIITILQTICKECAKVMLPES 120
+ +F + +++ C C + P +
Sbjct: 75 NPLFFDKLYLLIRGSCLSCHILKCPRA 101
>UniRef50_UPI0000ECC670 Cluster: DNA-directed RNA polymerase I
largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
subunit) (RPA194).; n=5; Gallus gallus|Rep: DNA-directed
RNA polymerase I largest subunit (EC 2.7.7.6) (RNA
polymerase I 194 kDa subunit) (RPA194). - Gallus gallus
Length = 917
Score = 151 bits (365), Expect = 1e-34
Identities = 74/138 (53%), Positives = 95/138 (68%), Gaps = 2/138 (1%)
Query: 790 PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARG 849
P N +M QSG+KGS +N Q+ +GQ L G+R P +SLP F+ + P++ G
Sbjct: 92 PENNLQLMVQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGG 151
Query: 850 FVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRR--LVKSLEDLVLQYDMTV 907
FV F TG+ P+EFFFH M GREGLVDTAVKT+ +GYLQR ++K LE LV+QYD+TV
Sbjct: 152 FVTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRNRCIIKHLEGLVVQYDLTV 211
Query: 908 RNATGEVVQFRYGSDGLD 925
R++ G VVQF YG DGLD
Sbjct: 212 RDSDGSVVQFLYGEDGLD 229
Score = 91.1 bits (216), Expect = 2e-16
Identities = 42/71 (59%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-ASRN 1090
K+QR + +PG AVG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ AS N
Sbjct: 403 KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN 462
Query: 1091 ISTPIITAELM 1101
I TP+++ ++
Sbjct: 463 IKTPMMSVPVL 473
>UniRef50_Q5FTX8 Cluster: DNA-directed RNA polymerase subunit beta';
n=224; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 1439
Score = 150 bits (363), Expect = 3e-34
Identities = 174/665 (26%), Positives = 290/665 (43%), Gaps = 93/665 (13%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
SRP+ +I+ +PV P +RP V D DL ++ N+ + R +
Sbjct: 276 SRPDWMIMDIVPVIPPELRPLVPLD-GGRFATSDLNDLYRRVINRNNRLKRLIELRAPDI 334
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ ++ G + K+P + L LKGKQGRFR NL GKRVD+S
Sbjct: 335 IVRNEKRMLQEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYS 394
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI P L++ + G+P +A L P + L+ Y
Sbjct: 395 GRSVIVVGPELKLHQCGLPKKMALELFKP--FIYSKLE----------------KYGHAT 436
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
+K K + R ++ L+ +V+ H V+ NR P+LH+L I + +
Sbjct: 437 TIKAAKRMVEKERPEVWDILE--EVIREH-----PVMLNRAPTLHRLGIQAFEPTLIEGK 489
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
+ + VCT +NADFDGD+M +H+P + EA+ EA +LM S N N
Sbjct: 490 AIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTN----------------N 533
Query: 547 LVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAI 606
+++P NG+ +I +QD + G Y ++ + ++ + A + G T PPA
Sbjct: 534 ILSPANGKPIIVPSQDIVLGLYYLSLEVPEYRETPDE---AVIKDGKIVT----AAPPAY 586
Query: 607 IKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNY------TGNKDLCVQDSYVIIRNS 660
++ + SL + R + ++ +GK+ T + L Q I+
Sbjct: 587 SDVAEIESAMLSGSLKLHDKIRLRL-PTIDAEGKSVRQTILTTPGRALIAQ----ILPKH 641
Query: 661 ELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIID- 719
+ + S+ L S + + R G++ AV RL + + G SFG D
Sbjct: 642 QAIPFSLVNKQLTKKNVSDVIDTVYRHCGQKEAVIFCDRLMGLGFRHAARAGISFGKDDM 701
Query: 720 VTPGKKLI---EAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSI 776
+ P K + ++ E DG I E+ + ++A ML E+S
Sbjct: 702 IIPEAKATLVGKTSEEVKEFEQQYQDGLITAGERYNKVVDAWSRCTDEVQAAMLKEIS-- 759
Query: 777 RELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLP 836
+++ K PTN+ +M+ SG++GS + Q+ G + L K P+G E P
Sbjct: 760 KQVIGK-------PTNSVWMMSHSGARGSPAQMKQL---AGMRGLMVK--PSG-EIIEQP 806
Query: 837 HFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSL 896
+ +F GL+ ++F + G R+GL DTA+KTA +GYL RRLV
Sbjct: 807 --------------IIANFKEGLSVLDYFTSSHGARKGLADTALKTANSGYLTRRLVDVA 852
Query: 897 EDLVL 901
+D ++
Sbjct: 853 QDCII 857
Score = 54.8 bits (126), Expect = 1e-05
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 1028 VCHHKYQRGV-----IEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGV 1078
+C H Y R + + G AVG +AAQSIGEPGTQ+T++TFH G A+ Q +
Sbjct: 942 ICAHCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATRGAEQSM 997
>UniRef50_Q9LQ02 Cluster: DNA-directed RNA polymerase; n=1;
Arabidopsis thaliana|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1453
Score = 149 bits (362), Expect = 3e-34
Identities = 170/616 (27%), Positives = 282/616 (45%), Gaps = 111/616 (18%)
Query: 358 LSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVH 417
L GKR D + RTV+ DP+L++ E+G+P +AK L E + N + RLV
Sbjct: 313 LLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKE---RLV------- 362
Query: 418 PGANYVQQRGLKTKKYLKYGNREKIAQ--ELKCGDVVERHLVDGDVVLFNRQPSLHKLSI 475
++V + +++ G+R Q +L+ GD + R L+DGD VL NR PS+H+ S+
Sbjct: 363 --TSFVPTLLDNKEMHVRRGDRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSL 420
Query: 476 MCHRAKVQPQRT-FRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTV 534
+ ++ P + N C P+ DFDGD ++ ++PQ+ +A+ E L
Sbjct: 421 IAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDEL---------- 470
Query: 535 IIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLI-TQRDTFFTKSEAQQLAACLLAGP 593
V+L++ L+ +NG L++ QD +T YL+ +++ + +++ QQL
Sbjct: 471 ---VALDK---QLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQL-------- 516
Query: 594 DATMRIDMPPPAIIK-----PRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDL 648
+PPPAIIK WTG Q+F ++ P G +YT
Sbjct: 517 QMYCPFQLPPPAIIKASPSSTEPQWTGMQLFGMLFPP-------------GFDYT----- 558
Query: 649 CVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYM 708
+ V++ N EL+ S + L G + I +L D G+ + ++ M S ++
Sbjct: 559 -YPLNNVVVSNGELLSFSEGSAWLRDGEGNFIERLLKHDKGKVLDI--IYSAQEMLSQWL 615
Query: 709 MNRGFSFGIIDVTPGKKLIEAKNKLLESGY------SKCDGYILEME--KGTLQCQPGCT 760
+ RG S + D+ L KN E Y C+ L +E + L
Sbjct: 616 LMRGLSVSLADLYLSSDLQSRKNLTEEISYGLREAEQVCNKQQLMVESWRDFLAVNGEDK 675
Query: 761 MEETL-----------EAVMLSELS------SIRELAAKACFRELHPTNAPLIMAQSGSK 803
E+++ ++ LSEL+ + R++ A A +R +N+ LIM+++GSK
Sbjct: 676 EEDSVSDLARFCYERQKSATLSELAVSAFKDAYRDVQALA-YRYGDQSNSFLIMSKAGSK 734
Query: 804 GSNINISQMIACVGQQALNGKRVPNGF--EDRSLPHFERHSKIPAAR------------- 848
G+ + Q C+G Q + + GF E + +S + A+
Sbjct: 735 GNIGKLVQHSMCIGLQN-SAVSLSFGFPRELTCAAWNDPNSPLRGAKGKDSTTTESYVPY 793
Query: 849 GFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVR 908
G +ENSF TGL P E F H++ R+ + G L RRL+ + D+ YD TVR
Sbjct: 794 GVIENSFLTGLNPLESFVHSVTSRDS--SFSGNADLPGTLSRRLMFFMRDIYAAYDGTVR 851
Query: 909 NATG-EVVQFRYGSDG 923
N+ G ++VQF Y +DG
Sbjct: 852 NSFGNQLVQFTYETDG 867
Score = 47.2 bits (107), Expect = 0.003
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 49 VPAPHGVLDRRMGTNQKDANCETCG-LGLAECVGHFGYIQLTLPVFHVGYFRAIITILQT 107
V AP+ V D R+G D+ C TCG C GHFG I + + + + + +L
Sbjct: 36 VEAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNK 95
Query: 108 ICKEC 112
IC C
Sbjct: 96 ICPGC 100
>UniRef50_Q3LWD4 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1329
Score = 149 bits (361), Expect = 4e-34
Identities = 135/464 (29%), Positives = 210/464 (45%), Gaps = 35/464 (7%)
Query: 69 CETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRK 128
C C + EC GH G ++L +P H +++ +I I++TIC C P +LKKS
Sbjct: 66 CSICFKPIFECFGHTGILKLEIPFLHCLFYKKVIKIIETICLNCNS---PHNLKKSSSLL 122
Query: 129 FINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTD 188
+ +L + + V K A TF E N S+ I KI + +
Sbjct: 123 Y-----KFLKNHSSSSYVKKIAFTFLILNLIE--NEYCDNCSMFIKKIKYFNDSCR---- 171
Query: 189 PIVKKVLMDFHEAK--ESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKL 246
+ F++ K + + AA S +E + + + +++ L ++ L
Sbjct: 172 ------FLYFYQNKLVSNQRNKAAFFLSN--EEFTTYNIFLISQKVKKSYYKSLQISSSL 223
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
E+L LP+ P +R +++ K T+ + I + L K
Sbjct: 224 ---ENLFFLNLPIIPNILRLDFITENKKDLRNPLNTLYLTLIKWNRSLYL--LIVQNKFS 278
Query: 307 LIQEDWDYLQLHAALY---INSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRV 363
L D QL+ + I++ ++ RG++ R++GK+GR R N+ GKRV
Sbjct: 279 LNLMDLHVSQLNKVIQKIIIDTSITSNNYLQNSIPRFRGIMTRMRGKKGRIRKNILGKRV 338
Query: 364 DFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGP-DVHPGANY 422
DF R+VISP+ NL I +P + ILT E++ N + L N D ++
Sbjct: 339 DFIFRSVISPNINLPIGFCSLPYNSRIILTITEKLINLNRS-IHSLKSNVMLDFLCNVSF 397
Query: 423 VQQRGLKTKKYLKYGNREKIAQEL-KCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAK 481
+ ++ K K K + ++ + K GD VER + D L NRQPSLHK SI+ H
Sbjct: 398 ILKKNDKRKINFKKIKKNLTSKYIIKNGDFVERKINHLDFSLLNRQPSLHKFSILGHLLH 457
Query: 482 VQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILM 525
++ N VC PYNADFDGDEMN+HL Q A+AE L LM
Sbjct: 458 FGFSKSLNINPSVCFPYNADFDGDEMNLHLCQNYYAKAEILELM 501
Score = 72.5 bits (170), Expect = 6e-11
Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 6/149 (4%)
Query: 796 IMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARG--FVEN 853
IM QS +KG N +M+ +GQQ + + + F++ SL + ++ IP+ +
Sbjct: 746 IMIQSKTKGKINNFIKMLELIGQQKIFLNSLFSPFKN-SLFNKNLYN-IPSFNNNEVYFD 803
Query: 854 SFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGE 913
S +TGL+ F + GRE LV +A++T++TGYL R+L SL D+ + D ++RN+ G
Sbjct: 804 SLFTGLSMLSFVSNLFTGRESLVVSAIRTSDTGYLSRKLQLSLTDISIFNDFSIRNSEGC 863
Query: 914 VVQFRYGSDGLDPTYMEGKDRPVDLARVL 942
V+ RY SD + Y K + + R+L
Sbjct: 864 VLILRYVSDCI--RYCSEKKNSISVHRIL 890
Score = 55.6 bits (128), Expect = 8e-06
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 1040 PGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNIST 1093
PG +G +A QSI EP TQMTLK+FHF G NI++ ++K I S N S+
Sbjct: 1003 PGYPIGIIAGQSISEPVTQMTLKSFHFTGHHHKNISKEFQKIKNIFRYSSNYSS 1056
>UniRef50_Q8KG14 Cluster: DNA-directed RNA polymerase subunit beta';
n=11; Chlorobiaceae|Rep: DNA-directed RNA polymerase
subunit beta' - Chlorobium tepidum
Length = 1490
Score = 149 bits (361), Expect = 4e-34
Identities = 178/684 (26%), Positives = 304/684 (44%), Gaps = 86/684 (12%)
Query: 233 PDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGT-NEDDLTMKQSEILLI 291
P+ED P L + + ++PE +++ +PV P +RP V ++ G DL +++
Sbjct: 257 PEEDSPELYI-YEGNKPEYMVMEVVPVIPPELRPLV--PLEGGRFATSDLNDLYRRVIIR 313
Query: 292 NDVIARHLASAGKCELIQEDWDYLQLHA-ALYINSEMSGIPLAMQPKKPGRGLVQRLKGK 350
N+ + + + +++ + LQ AL+ NS + + +P + L LKGK
Sbjct: 314 NNRLKKLIDIRAPEVILRNEKRMLQEAVDALFDNSRKANAVKTGESNRPLKSLSDALKGK 373
Query: 351 QGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLV 410
QGRFR NL GKRVD+S R+VI P L++ + G+P +A L P + RRLV
Sbjct: 374 QGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKSMAIELFQPFVI--------RRLV 425
Query: 411 CNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSL 470
+RG+ K +K + ++ DV+E+ ++DG VL NR P+L
Sbjct: 426 --------------ERGIA--KSVKSAKKLIDKKDPVVWDVLEK-VIDGHPVLLNRAPTL 468
Query: 471 HKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEA-LILMGSHN 529
H+L I + + + + + VCT +NADFDGD+M +H+P + EA+ EA L+++ SH
Sbjct: 469 HRLGIQAFQPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSPEAQLEASLLMLSSH- 527
Query: 530 TAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQ---QLA 586
NL+ P++G+ + +QD + G Y +T + F + Q +
Sbjct: 528 ----------------NLILPQSGKPVTVPSQDMVLGMYYLT-KARFGDVGQGQLFYSME 570
Query: 587 ACLLAGPDATMRIDMPPPAIIK-PRKLWTGKQIFSLI--MRPNRRCEVKANLETKGKNYT 643
++A + R+ + +K K+ L+ + P + E +A L K+
Sbjct: 571 EVIIAYNEE--RVGLHAQIFVKYDGKVDQVSDPVRLVDTLVPEEQAERRAWL----KSQI 624
Query: 644 GNKDLCVQDSYVIIRNSEL--VCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLA 701
K L V +I N + G ++K + + L + G R + +
Sbjct: 625 EQKKLLVTTVGRVIFNQHMPEEIGFINK-LINKKVAKELIAQLSSEVGNVETARFLDNIK 683
Query: 702 RMASYYMMNRGFSFGIID-VTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCT 760
+ Y M G S G+ D + P K+ KN +S I E +GTL
Sbjct: 684 EVGFDYAMRGGLSIGLSDAIVPETKVKHIKNAQRDSA-----KIIKEYNRGTLTDN---E 735
Query: 761 MEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQA 820
+ V + + + + + ++ N +M SG++GS + Q+ G A
Sbjct: 736 RYNQIVDVWQKTSNLVADESYEKLKKDRDGFNPLYMMLDSGARGSREQVRQLTGMRGLIA 795
Query: 821 LNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAV 880
K + +G + + P E GLT E+F T G R+GL DT++
Sbjct: 796 RPQKSM-SGQPGEIIEN-------PIISNLKE-----GLTVLEYFISTHGARKGLSDTSL 842
Query: 881 KTAETGYLQRRLVKSLEDLVLQYD 904
KTA+ GYL RRL +D+++ D
Sbjct: 843 KTADAGYLTRRLHDVAQDVIVTID 866
Score = 54.0 bits (124), Expect = 2e-05
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQ 1076
++E G AVG +AAQSIGEPGTQ+TL+TFH G A I +
Sbjct: 964 LVEIGEAVGVIAAQSIGEPGTQLTLRTFHQGGAAQGGIAE 1003
>UniRef50_A4E9H2 Cluster: DNA-directed RNA polymerase; n=1;
Collinsella aerofaciens ATCC 25986|Rep: DNA-directed RNA
polymerase - Collinsella aerofaciens ATCC 25986
Length = 1373
Score = 147 bits (357), Expect = 1e-33
Identities = 184/660 (27%), Positives = 286/660 (43%), Gaps = 84/660 (12%)
Query: 249 PEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELI 308
P ++IL +PV P +RP V D DL ++ N+ + R L ++
Sbjct: 190 PANMILDVIPVIPPDLRPMVQLD-GGRFAASDLNDLYRRVINRNNRLKRLLDLDAPAIIV 248
Query: 309 QEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSR 368
+ LQ ++ G P++ + +P + L + LKGKQGRFR NL GKRVD+S R
Sbjct: 249 NNEKRMLQESVDALFDNGRRGRPVSGRGGRPLKSLAEALKGKQGRFRQNLLGKRVDYSGR 308
Query: 369 TVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGP-DVHPGANYVQQRG 427
+VI DP L + + G+P +A L P F ++RLV G + GA RG
Sbjct: 309 SVIVTDPKLLLHQCGLPKTMALELFKP---FV-----MKRLVELGKVENIKGAKRAIDRG 360
Query: 428 LKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRT 487
T + I +E+ G VV L NR P+LH+LSI + +
Sbjct: 361 -ATFVW-------DILEEVIDGRVV----------LLNRAPTLHRLSIQAFEPVLVEGKA 402
Query: 488 FRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNL 547
+ VC+P+NADFDGD+M++H+P + +A+AEA +LM S N NL
Sbjct: 403 IHLHPLVCSPFNADFDGDQMSVHVPLSSQAQAEARVLMLSAN----------------NL 446
Query: 548 VTPRNGELLIAATQDFITGGYLITQ-RDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAI 606
+P +G+ + +QD I G Y +TQ RD ++ L D +DM A
Sbjct: 447 RSPASGKPVNIPSQDMIIGVYYLTQVRDGLPGENHVFASFDDALHAYDCRSEVDM--QAK 504
Query: 607 IKPRKLWTGKQIFSLIMRPNRRCEVK-ANLETKGKNYTGNKDLCVQDSY-VIIRNSELVC 664
I+ R + + R VK E + TGNK + S II N + C
Sbjct: 505 IQVRVSAADANVIN--EDGTRIFRVKNGKNEFVDYDVTGNKTARFETSIGRIIFNRQ--C 560
Query: 665 GSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGK 724
D + L+ D + Y + + Y + G + ++
Sbjct: 561 LPEDYEFMNYKMVKGDVAKLVADCCDRYPEAKVGPILDAIKYSGFHYATRAG-LTISVWD 619
Query: 725 KLIEA-KNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKA 783
LI A K +LL+ + D E+G + E +E V +E ++ + A
Sbjct: 620 ALIPAEKQELLDRAQANVDQINEYFEEGFIN-----ETERHIEVV--NEWTACTDKVAAL 672
Query: 784 CFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQA-LNGKRVPNGFEDRSLPHFERHS 842
N +MA SG++GS + Q+ G A ++G+ + LP
Sbjct: 673 MLDMFDEENPLYMMADSGARGSKTQLRQLGGMRGLMADMSGETI-------DLP------ 719
Query: 843 KIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
++ +F GL P E+F T G R+GLVDTA T+++GYL RRLV +D++++
Sbjct: 720 --------IKANFREGLLPLEYFISTYGARKGLVDTASHTSDSGYLTRRLVDVAQDVIVR 771
Score = 66.5 bits (155), Expect = 4e-09
Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 1041 GTAVGALAAQSIGEPGTQMTLKTFHFAGVASM-NITQGVPRVKEIINASRNISTPIITAE 1099
GTAVG +AAQSIGEPGTQ+T++T H GVA + +ITQG+P V + + N++ I+ E
Sbjct: 870 GTAVGIIAAQSIGEPGTQLTMRTIHSGGVAGVDDITQGLPTVSRMFDIVGNVNEKILGRE 929
Query: 1100 L-MQPY 1104
+ PY
Sbjct: 930 AELAPY 935
>UniRef50_Q9NBG7 Cluster: RNA polymerase III large subunit 2; n=2;
Philodina roseola|Rep: RNA polymerase III large subunit 2
- Philodina roseola
Length = 218
Score = 144 bits (350), Expect = 1e-32
Identities = 67/134 (50%), Positives = 91/134 (67%)
Query: 871 GREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYME 930
GREGLVDTAVKTAETGY+QRRLVK LEDL QYDMT+R +T ++VQF YG D LDP ++E
Sbjct: 1 GREGLVDTAVKTAETGYMQRRLVKYLEDLCCQYDMTIRTSTNDIVQFTYGGDSLDPIFLE 60
Query: 931 GKDRPVDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFKNELLSFL 990
GKDRPVD R+ VRA + + PL+G + + DD+ +E+K +++ F+
Sbjct: 61 GKDRPVDYDRIYQHVRALYRYDDELPLNGTDTNTFVAQEIVKDDYSIMDNEYKQQIIDFI 120
Query: 991 KATAGRVRALRARY 1004
++ +V A R +Y
Sbjct: 121 QSAGKKVDAYRKKY 134
Score = 52.8 bits (121), Expect = 5e-05
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 1013 QLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSI 1052
++ER T +QL+ FL++C KY R +EPGTAVGAL AQSI
Sbjct: 179 EVERCTRSQLLEFLQLCKSKYGRARLEPGTAVGALCAQSI 218
>UniRef50_P28363 Cluster: DNA-directed RNA polymerase I largest
subunit; n=1; Euplotes octocarinatus|Rep: DNA-directed
RNA polymerase I largest subunit - Euplotes
octocarinatus
Length = 638
Score = 144 bits (349), Expect = 1e-32
Identities = 83/200 (41%), Positives = 116/200 (58%), Gaps = 11/200 (5%)
Query: 312 WDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVI 371
W LQ Y++S ++ A K GL Q L+ K+G FR + GKRV+F+ R+VI
Sbjct: 445 WAELQESVNCYLDSSLA----AKLENKEKPGLRQLLERKEGIFRMKMMGKRVNFAGRSVI 500
Query: 372 SPDPNLQIQEVGVPVHVAKILTYPERVFPA-NLQWLRRLVCNGPDVHPGANYVQQRGLKT 430
SPDP + ++GVP +A+ +T+PE PA N++ L+R V NG HPGAN+++ +
Sbjct: 501 SPDPYISTDQIGVPEFIARTITFPE---PAKNIEKLKRCVINGAHKHPGANFIEYPNGER 557
Query: 431 KKYLKYGNREKIAQEL--KCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QRT 487
K EK + K +V RH+ GD +L NRQP+LHK SIM H A + P ++T
Sbjct: 558 KALENMTLEEKKQSSIIRKWRKIVYRHMQTGDPLLVNRQPTLHKPSIMAHNAIILPKEQT 617
Query: 488 FRFNECVCTPYNADFDGDEM 507
R + C YNADFDGDEM
Sbjct: 618 IRMHYSNCKSYNADFDGDEM 637
Score = 54.8 bits (126), Expect = 1e-05
Identities = 51/241 (21%), Positives = 108/241 (44%), Gaps = 13/241 (5%)
Query: 8 ETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKD- 66
++ + ++ F+ + IQQ + E+ N D P HG+ D MG + D
Sbjct: 6 DSLISSRLDGTRFSFYNDEEIQQMSVKEI--HNPMAYDELNNPTSHGICDESMGVSALDK 63
Query: 67 -ANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSY 125
+ C+TCG C GH G+I+LT ++ + + ++L++ C C ++ + + +
Sbjct: 64 LSKCKTCGCDSVYCPGHMGHIKLTSTCYNPFTMKLLHSLLKSKCLVCHRLRISPKRIELF 123
Query: 126 RRKFINPEMSYLLK-KNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAK 184
+ ++ YL++ + L H FS S ++ +++K + G EK ++
Sbjct: 124 EIRLKLIKLGYLVEAEKLSDFNH-----FS-LESIDSAIRILRKKTKGKTNKKEEKEDSE 177
Query: 185 KPTDP--IVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGM 242
+ + K+ L + + ++ N+E+ S +++E +P E + + DI M
Sbjct: 178 EVEEDKYAAKEALENLIQKEKENREIFYSHISSILQEDTPNESIGNAITVAIRDITKEIM 237
Query: 243 N 243
N
Sbjct: 238 N 238
>UniRef50_A4GIA1 Cluster: DNA-directed RNA polymerase; n=1;
uncultured marine bacterium HF10_29C11|Rep: DNA-directed
RNA polymerase - uncultured marine bacterium HF10_29C11
Length = 190
Score = 138 bits (334), Expect = 8e-31
Identities = 64/133 (48%), Positives = 92/133 (69%), Gaps = 2/133 (1%)
Query: 797 MAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFY 856
MA SG++GS N++ M +GQ + GKR+ G+ +R LPHF+R + RGF+ SF
Sbjct: 3 MAISGARGSMDNLNMMAGSIGQAKVRGKRLERGYNERVLPHFKRGGRGAQDRGFISGSFK 62
Query: 857 TGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDL-VLQYDM-TVRNATGEV 914
GL PTEFF ++ GRE LVDTAV+T+++GY+QRRL+ +++DL V DM +VRN +
Sbjct: 63 RGLEPTEFFMLSVSGRESLVDTAVRTSKSGYMQRRLINAMDDLKVFNDDMLSVRNTANRI 122
Query: 915 VQFRYGSDGLDPT 927
+QF YG DG+DP+
Sbjct: 123 IQFSYGEDGIDPS 135
>UniRef50_Q5YF58 Cluster: DNA-directed RNA polymerase; n=6;
Iridoviridae|Rep: DNA-directed RNA polymerase - Rock
bream iridovirus
Length = 1168
Score = 138 bits (333), Expect = 1e-30
Identities = 100/308 (32%), Positives = 156/308 (50%), Gaps = 28/308 (9%)
Query: 227 NLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQS 286
++F+R+ + + ++G KL+ P +LI+ R V P C RP + + DDLT
Sbjct: 162 SVFQRVTPQTLAIVGP--KLTHPLNLIMKRFMVLPSCCRPP--NKVGGSMVHDDLT---- 213
Query: 287 EILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMS-GIPLAMQPKKPGRGLVQ 345
LLI+ ++ R+L A Q Y L + + S G + + K G+ +
Sbjct: 214 --LLISYIVKRNLKLAAATSPEQRILYYQALKGDILCYMDNSKGRAVHVTSNKSLMGIKE 271
Query: 346 RLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQW 405
+ K G R NL GKR ++++R+V+ P+ L + +VGVP VA LT E V N++
Sbjct: 272 CITKKGGLLRHNLMGKRRNYTARSVVGPESTLALDQVGVPPQVADTLTIEEPVTKYNIEH 331
Query: 406 LRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFN 465
+R++ G H LK Y ++ ++CG + R L DGDVV+ N
Sbjct: 332 VRQMRATG---H----------LKAL----YDVDGQVRHVVRCGLTLHRSLRDGDVVVLN 374
Query: 466 RQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILM 525
RQP+LH+ S++ R KV P T R N V +N DFDGDE N++LP++ ARAE LM
Sbjct: 375 RQPTLHRNSMLGMRVKVLPGNTIRVNLAVTHGFNMDFDGDEGNLYLPRSLSARAEVATLM 434
Query: 526 GSHNTAVT 533
+ ++
Sbjct: 435 SPYTNILS 442
Score = 131 bits (316), Expect = 1e-28
Identities = 102/308 (33%), Positives = 144/308 (46%), Gaps = 30/308 (9%)
Query: 796 IMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFED--RSLPHF---ERHSKIPA--AR 848
+M +GSKG NI Q+ +GQQ ++G RV + RSLPH+ E HS +R
Sbjct: 630 VMTSAGSKGDAFNIMQISMLLGQQYVDGMRVQREIDYGYRSLPHYKPVEVHSVEAKYESR 689
Query: 849 GFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVR 908
GFV +SF GL P E FFH GREG++ T+ T TGY +RR+VK EDL + D++VR
Sbjct: 690 GFVRSSFMDGLNPREAFFHAKCGREGMISTSQMTGVTGYAERRMVKFSEDLRIANDLSVR 749
Query: 909 NATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNAEPLDGDGIVLAAEE 968
+A G +VQ YG G+DP PV+ R+ + P+D + E
Sbjct: 750 DANGNIVQLLYGGHGMDPMMCWQDGCPVNFERMAMQIDQSLDICMMIPMDMAQAAQSVCE 809
Query: 969 TLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYAGCGRAALQLERLTLTQLVRFLRV 1028
LA F V AR G A + + R+ +
Sbjct: 810 RLA---------------PIFPPLVRDSVMERHARIIKQGAA-----QFPCSDADRWAQE 849
Query: 1029 CHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINAS 1088
+ Y R + PG+ VG + AQ+ G TQ TL FH AG ++ T G R E++N S
Sbjct: 850 VYDAYVRALCVPGSPVGIVCAQAFGARQTQSTLNIFHKAG--GLHDT-GSIRFGELLNLS 906
Query: 1089 RNISTPII 1096
+ S ++
Sbjct: 907 KKSSRRLL 914
>UniRef50_Q1L5X6 Cluster: DNA-directed RNA polymerase; n=2;
lamiids|Rep: DNA-directed RNA polymerase - Solanum
lycopersicum (Tomato) (Lycopersicon esculentum)
Length = 1138
Score = 136 bits (330), Expect = 3e-30
Identities = 157/593 (26%), Positives = 269/593 (45%), Gaps = 93/593 (15%)
Query: 368 RTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRG 427
RTV+ DPN+++ E+G+P A+ L E + N + + L C+ + G V++ G
Sbjct: 2 RTVVVGDPNIELGEIGIPCXXAENLHMAETLSLRNWERMTDL-CDLMILQRGGILVRRNG 60
Query: 428 LKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QR 486
+ R + L+ GD++ R LVDGDVV+ NR PS+H+ S++ ++ P
Sbjct: 61 VLV--------RISVMDGLQKGDIIHRPLVDGDVVMINRPPSIHQHSLIALSVRILPINS 112
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
N VC+P+ DFDGD ++ ++PQ+ ++ E L V+L+Q
Sbjct: 113 VLSINPLVCSPFRGDFDGDCLHGYIPQSIDSTIELSEL-------------VALKQ---Q 156
Query: 547 LVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAI 606
L+ +NG+ L++ + D +T +LI + F + + QQL T + PP I
Sbjct: 157 LLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNI 216
Query: 607 IKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGS 666
WTGKQ+FSL++ + +N +C+ + E+V S
Sbjct: 217 C----YWTGKQLFSLLLPSDLEYVFPSN------------GVCISE-------GEIVTSS 253
Query: 667 MDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKL 726
S L + ++FY L++ G + + ++ + ++ RG S + D+
Sbjct: 254 GGSSWLRDAS-DNLFYSLVKHNGGD-TLDLLYAAQTVLCEWLSMRGLSVSLSDLYISADS 311
Query: 727 IEAKNKLLE--SGYSKCD--GYI-LEMEK-------GTL-QCQPGCTMEETLEAVMLSEL 773
+N + E SG + + YI L M K G L + + + ++M +
Sbjct: 312 YSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGNLEESKNSMGFDFEFMSIMQQKS 371
Query: 774 SSIRELAA---KACFRELH--------PTNAPLIMAQSGSKGSNINISQMIACVG-QQAL 821
+S+ + +A K FR++ N+ L M ++GSKG+ + + Q C+G QQ+L
Sbjct: 372 ASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHNMCLGLQQSL 431
Query: 822 --NGKRVPNGF------EDRSLPHFERHSKIPAARG------FVENSFYTGLTPTEFFFH 867
R+P +S E+ K+P G V++SF GL P E F H
Sbjct: 432 VPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECFVH 491
Query: 868 TMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATG-EVVQFRY 919
++ R+ +G L R+L+ + DL + YD TVRNA G ++VQF Y
Sbjct: 492 SLTTRDSSFSGHADV--SGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQFSY 542
>UniRef50_Q0E593 Cluster: DNA-directed RNA polymerase; n=2;
Ascovirus|Rep: DNA-directed RNA polymerase - Spodoptera
frugiperda ascovirus 1a
Length = 885
Score = 135 bits (326), Expect = 8e-30
Identities = 105/335 (31%), Positives = 158/335 (47%), Gaps = 18/335 (5%)
Query: 200 EAKESNKEVAAMINSGLVKE-MSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLP 258
+AK + +G VKE + +V + +PD D + + P LIL + P
Sbjct: 173 KAKRKIHRTLCRVTAGNVKEWLDDDDVAAILDDVPDVDADRV---LGCVHPSRLILRKWP 229
Query: 259 -VPPLCIRP----SVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWD 313
+P +C S + G ++DD+T+ +I+ +N++ G+ E +
Sbjct: 230 AIPSVCRHQENGRSSGAGADGGYSDDDITVLLCDIVRLNNIAGS--PERGEDERAKA--- 284
Query: 314 YLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISP 373
+ L + + + P G++ R+KGK G R NL GKR + ++RTVI P
Sbjct: 285 FADLKTKISVICTNTAKMKRNDNGDPVCGILDRIKGKNGLIRNNLLGKRSEMAARTVIGP 344
Query: 374 DPNLQIQEVGVPVHVAKILTYPERVFPANLQW---LRRLVCNGPDVHPGANYVQQRGLKT 430
DP L+++EVG P +A L PERV N W LR P+ Y++ +
Sbjct: 345 DPTLRLEEVGFPRCMANHLYIPERVTVHNYAWACSLRIPHALYPNTLVRPKYIRNGRIHR 404
Query: 431 KKYLKYGNREKIAQ-ELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFR 489
+ E + + GD V R L DGDVVL NRQP+LHK S+M R ++ F
Sbjct: 405 ACVRGCKSDECLKRCTPSIGDYVCRPLRDGDVVLMNRQPTLHKGSMMAFRIRLHDSLIFT 464
Query: 490 FNECVCTPYNADFDGDEMNMHLPQTEEARAEALIL 524
N V +NADFDGDEMN +PQ+ A +E L L
Sbjct: 465 LNLAVTKAFNADFDGDEMNAFIPQSSAACSELLTL 499
Score = 100 bits (239), Expect = 3e-19
Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 796 IMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFED------RSLPHFERHSKIPAARG 849
+M +SGSKG N+ Q +GQQ +NG R+P S P +++ RG
Sbjct: 725 VMIESGSKGDYFNVGQTKGMLGQQMINGSRIPMNLSGGTRTTIHSRPGETDQARVIRDRG 784
Query: 850 FVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRN 909
++ F GL P E+ FH M GRE + +A +TA+TGY RR+ K ED+++ D V
Sbjct: 785 YICRGFSNGLDPCEWLFHCMSGRESVCSSATETADTGYTTRRVNKFSEDIIIHNDGIVAV 844
Query: 910 ATGEVVQFRYGSDGLDP 926
+G + Q YG GLDP
Sbjct: 845 HSGNIYQLTYGDMGLDP 861
Score = 55.2 bits (127), Expect = 1e-05
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 55 VLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAK 114
V D R G + K A C TCG +C GHFG I L P+ H + + + I++ +C C +
Sbjct: 57 VFDSRGGAH-KAAPCGTCGQNYEDCPGHFGVITLCRPIIHPLFTQNVREIMRLVCSNCHR 115
Query: 115 VML-PESLKKSYRRKFINP----EMSYLLKKNLKAVVH 147
++ P+ ++ +Y+ + P ++ LL + + A H
Sbjct: 116 TIISPDMVQDTYKIRSKGPKRISDLLSLLDRRVSACAH 153
>UniRef50_Q01JX0 Cluster: DNA-directed RNA polymerase; n=5; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
(Rice)
Length = 1407
Score = 134 bits (324), Expect = 1e-29
Identities = 158/598 (26%), Positives = 252/598 (42%), Gaps = 80/598 (13%)
Query: 361 KRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGA 420
KR D + R+++ DP + + E+G+P+ +A L E+V N + + L CN +
Sbjct: 306 KRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYNFETI-NLKCNLHLLTKEV 364
Query: 421 NYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRA 480
V++ G L + + A +L+ GD+ R L DGD+VL NR PS+H+ S++ A
Sbjct: 365 LLVRRNG-----NLIFVRK---ANQLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSA 416
Query: 481 K-VQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVS 539
K + Q N C P+ DFDGD ++ ++PQ ++R E L VS
Sbjct: 417 KLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEEL-------------VS 463
Query: 540 LEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRI 599
L L+ ++G L++ T D + + +T D F K+E QQL L + T
Sbjct: 464 L---SGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQL-QMLSSSISLT--- 516
Query: 600 DMPPPAIIKPRK----LWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYV 655
P P++ K LWTGKQ+F +++ L K C S+
Sbjct: 517 --PMPSVFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIKDSEVL----TCSSGSFW 570
Query: 656 IIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLA-RMASYYMMNRGFS 714
+ N+ + M K G K+ F +D E+ MW L+ ++ Y+ + +S
Sbjct: 571 LQNNTSSLFSVMFKE---YGCKALEFLSSTQDVLCEFLT--MWGLSVSLSDLYLFSDHYS 625
Query: 715 FGIID------VTPGKKLIEAKNKLLES-GYSKCDGYILEMEKGTLQCQPGCTMEE--TL 765
+ + ++ + K LL S Y ++ Q G T +
Sbjct: 626 RRKLSEEVHLALDEAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGFTQVSLPII 685
Query: 766 EAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGK- 824
+ M S S +L K + + N+ + M SGSKGS + Q ACVG Q K
Sbjct: 686 RSSMTSFKSVFNDL-LKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASKF 744
Query: 825 --RVPNGFEDRSLPHFERHSKIPA--------------ARGFVENSFYTGLTPTEFFFHT 868
R+P+ S + RH + + NSF GL P E H
Sbjct: 745 PFRIPS---QLSCVSWNRHKSLNCEITDGTSECVGGQDMYAVIRNSFLDGLNPLECLLHA 801
Query: 869 MGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATG-EVVQFRYG-SDGL 924
+ GR G L R+L+ L D + YD TVR++ G ++V+F Y +DG+
Sbjct: 802 ISGRANFFSENADV--PGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTADGM 857
Score = 46.0 bits (104), Expect = 0.006
Identities = 53/219 (24%), Positives = 90/219 (41%), Gaps = 19/219 (8%)
Query: 55 VLDRRMGTNQKDANCETCGL-GLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECA 113
V + ++G C TCG + +C GHFG I+L V + + ++ +L IC C
Sbjct: 42 VTNAKLGLPNGAPQCATCGSRSIRDCDGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCL 101
Query: 114 KVMLPESLKKSYRR------KFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVK 167
+ KK+ K+ + + S L + ++ T S+ + M K
Sbjct: 102 TLKQNGDTKKADGTTIQGTCKYCSKDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDK 161
Query: 168 KSSIG-ILKIVHEKYRAKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVL 226
S I + V K + K P + + + DF + N+ + K +SP +V
Sbjct: 162 MSIIAEVAGGVAHKSKNKAPHETLPQD-FWDF--IPDDNQPPIFNVTK---KILSPYQVF 215
Query: 227 NLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIR 265
++ +++ E I N R E L L+ LPV P C R
Sbjct: 216 HMLKKLDPELI-----NQVTRRRELLFLSCLPVTPNCHR 249
>UniRef50_Q7R0K2 Cluster: DNA-directed RNA polymerase; n=1; Giardia
lamblia ATCC 50803|Rep: DNA-directed RNA polymerase -
Giardia lamblia ATCC 50803
Length = 2142
Score = 134 bits (324), Expect = 1e-29
Identities = 65/137 (47%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Query: 792 NAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARG-F 850
N M SG+KGS +N+ M C+GQQ L G+RVP+ ++LP + +G +
Sbjct: 1219 NCLAYMVLSGAKGSTVNLQMMTTCLGQQNLEGRRVPSTQTGKTLPSHIPYEHCELVQGGY 1278
Query: 851 VENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNA 910
V + F TG+ P+ FFFH GREGL+DTA+KTA +GY QR LVK+LE LV+ YD TVR +
Sbjct: 1279 VIDRFLTGIRPSSFFFHCQAGREGLIDTAIKTASSGYFQRVLVKNLEGLVVAYDGTVRRS 1338
Query: 911 TGEVVQFRYGSDGLDPT 927
+VQ YG DG+D T
Sbjct: 1339 DNMLVQLLYGGDGVDTT 1355
Score = 84.6 bits (200), Expect = 1e-14
Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 1025 FLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEI 1084
F + + K+ R ++ PG+AVG +AAQS GEP TQ+TL TFH AG +N T GVPR++EI
Sbjct: 1598 FKLLAYTKFIRSLVAPGSAVGVIAAQSTGEPSTQLTLNTFHLAGHGGVNATMGVPRLREI 1657
Query: 1085 INASRNISTPIIT 1097
I +RN S+PIIT
Sbjct: 1658 I-MTRNTSSPIIT 1669
Score = 83.8 bits (198), Expect = 3e-14
Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 9/160 (5%)
Query: 289 LLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLK 348
LL N ++ + E + E LQLH + Y++ + + G+ Q L+
Sbjct: 450 LLANGMVELSTSQKPVPEALVEAMLILQLHVSRYLDGTVLSKTIFSS------GIKQLLE 503
Query: 349 GKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRR 408
K+G FR N+ GKR +++ R+VI+PD NL E+G+P + AK LT+PE + N++ + R
Sbjct: 504 KKEGLFRMNIMGKRGNYAGRSVIAPDANLDTDEIGLPEYFAKKLTFPEPINEYNVELMAR 563
Query: 409 LVCNGPDVHPGAN-YVQQRGLKT-KKYLKYGNREKIAQEL 446
L+ NGP +PGA+ + + G + L Y R+ +A L
Sbjct: 564 LIINGP-TYPGASLLIDESGSRVLLTQLSYEQRKALAHTL 602
Score = 71.7 bits (168), Expect = 1e-10
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 431 KKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQ--RTF 488
+ Y G + A LK ++ RH + D V+ NRQP+LHK S++ R +V P +T
Sbjct: 635 RSYDLRGMKTSFADTLKPPKILLRHTLPNDFVILNRQPTLHKHSMIALRVRVLPSNAQTL 694
Query: 489 RFNECVCTPYNADFDGDEMNMHLPQTEEARAE--ALILMGSHNTAVT 533
RF+ C NADFDGDE + PQT EA +E L+ +H +VT
Sbjct: 695 RFHFASCKGLNADFDGDECCVLKPQTHEAASEYANLVHADAHFISVT 741
Score = 55.6 bits (128), Expect = 8e-06
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 11 VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
V +S +T + S I++ A V+T+ D +P G D MG CE
Sbjct: 6 VSASLSGLTLSAYSEDDIRKLATCRVVTEQGL--DNVGLPIRGGYYDPAMGPRLFYDVCE 63
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPE 119
TCGL C GH GY++L + ++ +FR + + + +C C + ++ E
Sbjct: 64 TCGLRWKHCPGHAGYVELPVYCYNHFFFRYTLQLYKLVCHSCHRFLITE 112
Score = 39.5 bits (88), Expect = 0.54
Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 601 MPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQ--------D 652
+P PAI+ P WTGK + S ++ K + + + NYTG+ + +
Sbjct: 947 VPQPAIVYPVARWTGKAVISSMLH-------KVSCQREPINYTGSIKIPTDIWGPFRETE 999
Query: 653 SYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRG 712
+ ++I N+ L+ G +DK + + + + + +G + R+A+Y + G
Sbjct: 1000 ARLVIINNTLLTGIVDKQHIAT-VPHGLAHAVFELYGHNRCGWFLSNFGRLATYVLQRHG 1058
Query: 713 FSFGIIDVTPGKKLIEAKNKLLE 735
F+ + D+ +A+ KL +
Sbjct: 1059 FTCSVEDMVLRDTAEKARYKLCD 1081
>UniRef50_Q6F0L8 Cluster: DNA-directed RNA polymerase subunit beta';
n=5; Mollicutes|Rep: DNA-directed RNA polymerase subunit
beta' - Mesoplasma florum (Acholeplasma florum)
Length = 1254
Score = 134 bits (323), Expect = 2e-29
Identities = 145/528 (27%), Positives = 234/528 (44%), Gaps = 65/528 (12%)
Query: 65 KDANCETCGLGLAECV---GHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESL 121
K CE CG+ L E + G+I+L PV H+ + + + ++ +K + E +
Sbjct: 72 KGKKCEKCGVELTESIVRRERMGHIELAEPVTHIWMVKVSPSRIASLLDLKSKEL--EEV 129
Query: 122 KKSYRRKFINPEMS--YLLKKNLKAVVHKKAKTFSKC-PSCEAINGMVKKSSI-GILKIV 177
++P S + K+ L V K KT SK P+ E I ++ + LK
Sbjct: 130 VYFVSHIVLDPGTSKHFAAKEVLDLGVSKSQKTRSKLRPAIEEIVTLINDPAHRDTLKAE 189
Query: 178 HEKYRAKKPTDPI-VKKVLMDFHEAKESNKEVAAMINSGLVKEMS---PLEVL-NLFRRI 232
PT P + + + ++ + A L+K++ +E+ N I
Sbjct: 190 RLLEELNNPTIPFSIDEATALISKYTDAKFGIGASAIEELLKQIDLDKEIEITKNTLDAI 249
Query: 233 -PDED----IPLLGMNVKLSR----PEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTM 283
P+ D + L + L R PE ++L LPV P IRP + D T + +
Sbjct: 250 GPNADNSKLLKRLDILESLKRSNQKPEWMVLRVLPVIPPDIRPIIQLDGGRFTTSE-IND 308
Query: 284 KQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGL 343
I++ N+ + + +I + LQ +++E P+ + K+P + L
Sbjct: 309 LYRRIIIRNERLLKVKEMGAPSIIINNEKRMLQEAVDALLDNERKPRPIQGKDKRPLKSL 368
Query: 344 VQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANL 403
LKGKQGRFR NL GKRVD+S R+VI+ P+L++ + G+P +A L P +
Sbjct: 369 TSVLKGKQGRFRQNLLGKRVDYSGRSVIAIGPDLKMYQAGIPREMALTL-----FKPFVI 423
Query: 404 QWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVL 463
QWL+ H Y + + K L+ N KI + L+ H++ VL
Sbjct: 424 QWLQE--------H---EYAENVKVAEKMILQ--NDPKIWEALE-------HVIKDRPVL 463
Query: 464 FNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALI 523
NR P+LH+L I K+ + R + V T +NADFDGD+M +H+P T+EA AEA
Sbjct: 464 LNRAPTLHRLGIQAFEPKLVKGKAIRLHPLVTTAFNADFDGDQMAVHVPITKEAVAEARA 523
Query: 524 LMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLIT 571
LM N ++ P++G+ ++ QD I G Y T
Sbjct: 524 LMLGSNA----------------ILGPKDGKAIVTPGQDIILGNYYAT 555
Score = 69.7 bits (163), Expect = 4e-10
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 6/78 (7%)
Query: 1028 VCHHKYQRGV-----IEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVA-SMNITQGVPRV 1081
VC Y R + ++ G VG +AAQSIGEPGTQ+T++TFH GVA +ITQG+PR+
Sbjct: 952 VCQRCYGRNLATASLVKIGEPVGVIAAQSIGEPGTQLTMRTFHTGGVAGDADITQGLPRI 1011
Query: 1082 KEIINASRNISTPIITAE 1099
KE+++ + + I AE
Sbjct: 1012 KELLDVTTQKGSVAIIAE 1029
Score = 54.0 bits (124), Expect = 2e-05
Identities = 23/51 (45%), Positives = 38/51 (74%)
Query: 851 VENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL 901
+++SF GL+ +E+F T G R+G+ D A+KTA++GYL RRLV +++V+
Sbjct: 816 IKSSFREGLSVSEYFVSTHGARKGMADLALKTADSGYLTRRLVDVSQEIVV 866
>UniRef50_Q97NQ8 Cluster: DNA-directed RNA polymerase subunit beta';
n=134; Firmicutes|Rep: DNA-directed RNA polymerase
subunit beta' - Streptococcus pneumoniae
Length = 1225
Score = 132 bits (318), Expect = 7e-29
Identities = 106/328 (32%), Positives = 165/328 (50%), Gaps = 42/328 (12%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
++PE +IL LPV P +RP + D DL ++ N+ +AR L
Sbjct: 222 NKPEWMILNILPVIPPDLRPMLQLD-GGRFASSDLNDLYRRVINRNNRLARLLELNAPGI 280
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
++Q + LQ I++ G P+ +P + L LKGKQGRFR NL GKRVDFS
Sbjct: 281 IVQNEKRMLQEAVDALIDNGRRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFS 340
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI+ P L++ + GVP +A L P F +R +V A + Q
Sbjct: 341 GRSVIAVGPTLKMYQCGVPREMAIELFKP---FV-----MREIV---------ARDIVQN 383
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
K+ ++ G+ E+I L+ +V++ H VL NR P+LH+L I + +
Sbjct: 384 VKAAKRLVERGD-ERIWDILE--EVIKEH-----PVLLNRAPTLHRLGIQAFEPVLIDGK 435
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
R + VC YNADFDGD+M +H+P +EEA+AEA ILM ++ E +
Sbjct: 436 ALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILM------------LAAE----H 479
Query: 547 LVTPRNGELLIAATQDFITGGYLITQRD 574
++ P++G+ ++ +QD + G Y +T +
Sbjct: 480 ILNPKDGKPVVTPSQDMVLGNYYLTMEE 507
Score = 74.1 bits (174), Expect = 2e-11
Identities = 40/76 (52%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
Query: 1028 VCHHKYQRGV-----IEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVAS-MNITQGVPRV 1081
VC H Y + +E G AVG +AAQSIGEPGTQ+T++TFH GVAS +ITQG+PRV
Sbjct: 898 VCRHCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRV 957
Query: 1082 KEIINASRNISTPIIT 1097
+EI A +IT
Sbjct: 958 QEIFEARNPKGEAVIT 973
Score = 73.7 bits (173), Expect = 3e-11
Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 31/206 (15%)
Query: 699 RLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPG 758
R+ + ++ G + GI D+ +++ K +++E + + + + +G +
Sbjct: 642 RMKNLGYHHSTLAGLTVGIADIP----VVDDKAEIIEESHKRVEQITKQFRRGMI----- 692
Query: 759 CTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQ 818
T +E AV +E + RE K P N ++M SG++G+ N SQ+ G
Sbjct: 693 -TDDERYNAVT-AEWRAAREKLEKRLIANQDPKNPIVMMMDSGARGNISNFSQLAGMRGL 750
Query: 819 QALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDT 878
A PNG R ++P F E GL+ E FF T G R+G+ DT
Sbjct: 751 MA-----APNG----------RIMELPILSNFRE-----GLSVLEMFFSTHGARKGMTDT 790
Query: 879 AVKTAETGYLQRRLVKSLEDLVLQYD 904
A+KTA++GYL RRLV +D++++ D
Sbjct: 791 ALKTADSGYLTRRLVDVAQDVIIRED 816
>UniRef50_Q89506 Cluster: DNA-directed RNA polymerase; n=2;
Invertebrate iridescent virus 6|Rep: DNA-directed RNA
polymerase - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 1051
Score = 130 bits (314), Expect = 2e-28
Identities = 101/339 (29%), Positives = 164/339 (48%), Gaps = 33/339 (9%)
Query: 647 DLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASY 706
DL + + + I + G + K L S T+SS+ IL +++G E + + + +
Sbjct: 710 DLYINEEDLKINRGVIYDGCLTKKYLSS-TESSLIKILYKEYGVETCATFLNNIQFLTNR 768
Query: 707 YMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLE 766
++M FS D K+++ + L +E EK + Q E+ +
Sbjct: 769 WLMISSFSIHAGDCIKQKEVLGTVEQCL-----------MESEKIKMTTQNPFIREQKIM 817
Query: 767 AVMLSELSSIRELAAKACFRE---LHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNG 823
+ + ++A A R+ LH N L +SGSKG ++NI+Q+ + +GQQ G
Sbjct: 818 QTLSNAKDVGMKIAKDALKRDNVNLHAQNNFLTTVESGSKGDHLNIAQITSLLGQQITEG 877
Query: 824 KRVPNGFED--RSLPHF----------ERHSKIPA--ARGFVENSFYTGLTPTEFFFHTM 869
+RV + R+LPH+ H + ++GF+ +SF GL P EFFFH M
Sbjct: 878 QRVKPLLSNGKRTLPHYILKEENNDTEHFHDLLEEYESQGFISSSFAQGLNPKEFFFHCM 937
Query: 870 GGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYM 929
GR+G+ DTA+ TA +GY+ RR VK ED+ + YD TV++ G Q YG G DP+ +
Sbjct: 938 AGRQGVCDTAMSTATSGYIMRRNVKLTEDIKVAYDGTVQDTRGRRFQMAYGELGYDPSKL 997
Query: 930 ---EGKDRPVDLARVLADVRAKCQDKNAEPLDGD-GIVL 964
GK ++AR++ + +D L+ D IVL
Sbjct: 998 VKVNGKPEVCNIARLVNKLNCNFEDNIKNFLEKDRSIVL 1036
Score = 97.5 bits (232), Expect = 2e-18
Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 26/154 (16%)
Query: 421 NYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRA 480
N+ Q+ L +KK++K L+ G +V R+L +GD+++ NRQP+LHK S+M R
Sbjct: 518 NFQQKVVLPSKKFIK----------LEEGWIVHRYLQNGDILVLNRQPTLHKASMMALRV 567
Query: 481 KVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSL 540
K+ +TF+FN PYNADFDGDEMN H PQ+EE++AE +L
Sbjct: 568 KIMDVKTFKFNLACTKPYNADFDGDEMNAHAPQSEESKAELF----------------TL 611
Query: 541 EQNKSNLVTPRNGELLIAATQDFITGGYLITQRD 574
K +++ ++G+ + QD +TG YL+++ +
Sbjct: 612 STPKQCIMSCQSGKPNLTIVQDSLTGAYLMSKEN 645
Score = 76.2 bits (179), Expect = 5e-12
Identities = 37/73 (50%), Positives = 51/73 (69%)
Query: 341 RGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFP 400
+GL +RL GK+G+ R NL GKR + S+RTVI PDP L+I EV VP +A+ LT+P+ V
Sbjct: 363 KGLRERLTGKEGQIRNNLLGKRCEMSARTVIGPDPTLKIDEVIVPKEIAQSLTFPDFVNK 422
Query: 401 ANLQWLRRLVCNG 413
N+ L +LV +G
Sbjct: 423 HNIDRLTKLVNSG 435
Score = 68.9 bits (161), Expect = 8e-10
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 31/230 (13%)
Query: 67 ANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYR 126
A CETC +C GHFG+I+L +P+ H + ++ IL+ C +C + +L + +
Sbjct: 60 APCETCHQNEWDCPGHFGHIELNVPIIHPLFINHVVNILKIFCWKCNEFLLTKDHLE--- 116
Query: 127 RKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEK-YRAKK 185
+N + +K AV+ +K K +C C K + + I ++ YR
Sbjct: 117 ---LNNILKLEKEKKFNAVL-EKIKKCDRCVHCTTPRADYK---LVLNDITYKTIYRTFS 169
Query: 186 PTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVK 245
VK K+ N E ++++ +VK+ +F I E + +LG
Sbjct: 170 YQGGAVKTA-----RDKKLN-ESREIVSAEMVKK--------IFDNIKLEYVEMLG---- 211
Query: 246 LSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVI 295
+S P+D L PV P C RP V D N+DDLT + EI+ N +I
Sbjct: 212 ISHPKDFCLEVFPVIPSCCRPHEVQD--GNINDDDLTYQLMEIVKNNSMI 259
>UniRef50_Q9PQV5 Cluster: DNA-directed RNA polymerase subunit beta';
n=1; Ureaplasma parvum|Rep: DNA-directed RNA polymerase
subunit beta' - Ureaplasma parvum (Ureaplasma
urealyticum biotype 1)
Length = 1305
Score = 129 bits (311), Expect = 5e-28
Identities = 102/328 (31%), Positives = 166/328 (50%), Gaps = 37/328 (11%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
S+PE +++TR+PV P RP + D T D + +I++ N+ + + A+
Sbjct: 290 SKPEWMVMTRIPVTPSETRPIISLDGGRFTTSDTNNFYR-KIIIRNERLKQMQATDAPEI 348
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
L+ + LQ ++ P+ + K+P + L LKGKQG FR NL GKRVD+S
Sbjct: 349 LLDNEKRLLQEAVDSLFDNNSRKKPVVGKDKRPLKSLSNHLKGKQGLFRQNLLGKRVDYS 408
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHP-GANYVQQ 425
R+VI P L++ EVG+P + L P + + +R+ G ++ P AN
Sbjct: 409 GRSVIVVGPELKMYEVGIPALMILKLFRPYII----SELIRKRDELGNEIQPICAN---- 460
Query: 426 RGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQ 485
+K ++ +AQ+ + VVE+ + V+L NR P+LH+L I K+
Sbjct: 461 --------IKLAEQKILAQDNEIWPVVEKVIKQRPVIL-NRAPTLHRLGIQAFEPKMVDG 511
Query: 486 RTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEA-LILMGSHNTAVTVIIRVSLEQNK 544
+ R + V T +NADFDGD+M +H+P ++EA AEA IL+ S
Sbjct: 512 KAIRLHPLVTTAFNADFDGDQMAVHIPLSKEAVAEARSILLASW---------------- 555
Query: 545 SNLVTPRNGELLIAATQDFITGGYLITQ 572
+++ P++G+ +I TQD I G Y +T+
Sbjct: 556 -HILGPKDGKPIITPTQDMILGIYYLTK 582
Score = 69.3 bits (162), Expect = 6e-10
Identities = 31/51 (60%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVA-SMNITQGVPRVKEIIN 1086
+IE GTA+G +AAQSIGEPGTQ+T++TFH GVA NITQG R+K++ +
Sbjct: 1017 LIETGTAIGVIAAQSIGEPGTQLTMRTFHTGGVAGDTNITQGFERIKQLFD 1067
Score = 61.3 bits (142), Expect = 2e-07
Identities = 37/111 (33%), Positives = 67/111 (60%), Gaps = 9/111 (8%)
Query: 792 NAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFV 851
N +IMA+SG++G+ N +Q+ G + L K N + + + +IP +
Sbjct: 817 NPIVIMAKSGARGNTSNFTQL---AGMRGLMSKSY-NYDQKNNNGVIKDTIEIP-----I 867
Query: 852 ENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
++SF GL+ +E+F + G R+G+ DTA+KTA++GY+ R+LV S + +V++
Sbjct: 868 KHSFIEGLSVSEYFNSSFGARKGMTDTAMKTAKSGYMTRKLVDSTQAVVIK 918
>UniRef50_Q2N101 Cluster: DNA-directed RNA polymerase; n=1;
Aphrocallistes vastus|Rep: DNA-directed RNA polymerase -
Aphrocallistes vastus
Length = 364
Score = 128 bits (310), Expect = 7e-28
Identities = 109/384 (28%), Positives = 182/384 (47%), Gaps = 45/384 (11%)
Query: 507 MNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITG 566
MN+H+PQ E AR+EA+ L+G+ + ++P++G + QD + G
Sbjct: 1 MNVHMPQNEVARSEAINLVGTQH----------------QYLSPKDGAPISGLIQDHVIG 44
Query: 567 GYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPN 626
G L+T R QL L P R + PP ++KP+KLW+GKQ+ S +++ N
Sbjct: 45 GVLLTIRGRMLDVHTYFQLVYAAL--PTFKHRFRVVPPCMLKPKKLWSGKQVISTVLK-N 101
Query: 627 RRCEVKANLETKGKNYTGN---KDL-CVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFY 682
K + GK TG +L + ++ VI R+ EL+CG +DKS GS T+ + +
Sbjct: 102 IIPPEKQLVSMHGKAKTGGILWTELPYMSENEVIFRDGELLCGVLDKSQFGS-TQFGLVH 160
Query: 683 ILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLL----ESGY 738
+G A + LAR+ + ++ + GFS G+ D+ K+ + +N +L E+G+
Sbjct: 161 ACHELYGSSIASXLLSALARLFTVFLQHHGFSMGVADILLTKEGEKLRNSILKRTEEAGF 220
Query: 739 SKCDGYILEMEKGTLQCQPGCTMEETLE--------AVMLSEL-----SSIRELAAKACF 785
+ + +G ++ E A++ ++L ++I
Sbjct: 221 AAANELFSSESEGVKSVGEESLRKKFEEFYHTGGNSAIVHADLVFKKHANIINNELNQKL 280
Query: 786 RELH----PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERH 841
+LH P N+ +M ++G+KGS +N Q+ A +GQ L G R P RSLP + +
Sbjct: 281 NKLHLKGFPENSLHLMVEAGAKGSAVNRLQISALLGQIELEGARPPLTISGRSLPCNKPY 340
Query: 842 SKIPAARGFVENSFYTGLTPTEFF 865
A GFV F TG+ P E+F
Sbjct: 341 DISLKAGGFVTGRFLTGIDPREYF 364
>UniRef50_Q2RFP0 Cluster: DNA-directed RNA polymerase subunit beta';
n=12; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Moorella thermoacetica (strain ATCC 39073)
Length = 1164
Score = 127 bits (307), Expect = 2e-27
Identities = 102/326 (31%), Positives = 161/326 (49%), Gaps = 44/326 (13%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
+RPE +I+ +PV P +RP V D DL ++ N+ + R L
Sbjct: 221 NRPEWMIMDVIPVIPPELRPMVQLD-GGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDI 279
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ I++ G P+ +P + L LKGKQGRFR NL GKRVD+S
Sbjct: 280 IVRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYS 339
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI P L++ + G+P +A L P F ++RLV G
Sbjct: 340 GRSVIVVGPELKMHQCGLPKEMALELFKP---FV-----MKRLVDKG----------LAH 381
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
+K+ K + E++ E+ DV+E ++ VL NR P+LH+L I + R
Sbjct: 382 NIKSAKRMV----ERVKNEV--WDVLE-EVISEHPVLLNRAPTLHRLGIQAFEPVLVEGR 434
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEA-LILMGSHNTAVTVIIRVSLEQNKS 545
+ + VCT YNADFDGD+M +H+P + EA+AEA L++M +H
Sbjct: 435 AIQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMMAAH----------------- 477
Query: 546 NLVTPRNGELLIAATQDFITGGYLIT 571
+++ P++G +++ TQD + G Y +T
Sbjct: 478 HILNPKDGRPVVSPTQDMVLGAYYLT 503
Score = 70.5 bits (165), Expect = 3e-10
Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 1016 RLTLTQLVRFLRVCHHKYQRGV-----IEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVA 1070
R LT R+ VC Y R + +E G AVG +AAQSIGEPGTQ+T++TFH GVA
Sbjct: 845 RSVLTCKTRY-GVCRKCYGRDLATGREVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVA 903
Query: 1071 SMNITQGVPRVKEIINASRNISTPII 1096
+ITQG+ RV+E+ A + II
Sbjct: 904 GDDITQGLSRVEELFEARKPKGQAII 929
Score = 66.1 bits (154), Expect = 5e-09
Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 35/228 (15%)
Query: 700 LARMASYYMMNRGFSFGIID-VTPG-KKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQP 757
+ ++ +Y GF+ GI D V PG KK I A+ ES K D Q +
Sbjct: 601 IKKVGFHYSTLAGFTIGIDDIVVPGDKKEIIAET---ESAVEKIDQ----------QYRK 647
Query: 758 GCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVG 817
G EE ++S ++ + K + N +MA SG++G N+ Q+ G
Sbjct: 648 GLISEEERYQKVISLWNNATDTLTKKLMAGMDKFNPVFMMANSGARG---NVQQIRQLAG 704
Query: 818 QQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVD 877
+ L P+G R +P ++ +F GLT E+F T G R+GL D
Sbjct: 705 MRGLMAD--PSG----------RIIDLP-----IKANFREGLTVLEYFISTHGARKGLAD 747
Query: 878 TAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
TA++TA++GYL RRLV +D++++ D A EV + + G+ ++
Sbjct: 748 TALRTADSGYLTRRLVDVAQDVIVREDDCGTTAGIEVREIQEGNQVIE 795
>UniRef50_P95405 Cluster: DNA-directed RNA polymerase subunit beta';
n=23; Lactobacillales|Rep: DNA-directed RNA polymerase
subunit beta' - Oenococcus oeni (Leuconostoc oenos)
Length = 1004
Score = 127 bits (306), Expect = 2e-27
Identities = 103/329 (31%), Positives = 168/329 (51%), Gaps = 40/329 (12%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGT-NEDDLTMKQSEILLINDVIARHLASAGKC 305
++PE +++ +PV P +RP V ++ G DL ++ N+ + R L
Sbjct: 156 NKPEWMVMDVVPVIPPDLRPMV--QLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPG 213
Query: 306 ELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDF 365
++Q + LQ I++ G P++ +P + L LKGKQGRFR NL GKRVD+
Sbjct: 214 IIVQNEKRMLQEAVDALIDNGRRGRPVSGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDY 273
Query: 366 SSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQ 425
S R+VI P L++ ++G+P +A L P F N RL+ G + + GAN
Sbjct: 274 SGRSVIDVGPFLKMNQMGLPRQMAVELFKP---FIYN-----RLIELGTE-NGGAN---- 320
Query: 426 RGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQ 485
L++ + L E + Q++ +VV+ H VL NR P+LH+L I +
Sbjct: 321 -NLRSARRL-VERHEDVVQDV-LEEVVKEH-----PVLLNRAPTLHRLGIQAFEPVLVSG 372
Query: 486 RTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKS 545
+ R + V T YNADFDGD+M +H+P ++EA+AEA +LM + S
Sbjct: 373 KAMRLHPLVTTAYNADFDGDQMAIHVPLSDEAQAEARLLMLA----------------AS 416
Query: 546 NLVTPRNGELLIAATQDFITGGYLITQRD 574
+++ P++G+ ++A +QD G Y +T +
Sbjct: 417 HILAPKDGKPIVAPSQDMTIGNYYLTTEE 445
Score = 72.1 bits (169), Expect = 8e-11
Identities = 34/52 (65%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVA-SMNITQGVPRVKEIINA 1087
++E G AVG +AAQSIGEPGTQ+T++TFH GVA S +ITQG+PRV+EI A
Sbjct: 851 IVEVGEAVGTVAAQSIGEPGTQLTMRTFHTGGVALSEDITQGLPRVQEIFEA 902
Score = 53.6 bits (123), Expect = 3e-05
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 851 VENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNA 910
V +F GL E F T G R+G+ DTA+KTA +GYL RRLV ++++++ + +
Sbjct: 702 VTANFREGLCVLEMFISTHGARKGMTDTALKTANSGYLTRRLVDVAQEVIVREEDCGTDR 761
Query: 911 TGEVVQFRYGSDGLDPTY 928
+V G++ ++P Y
Sbjct: 762 GLDVSAIMDGNEVIEPLY 779
>UniRef50_Q5D869 Cluster: DNA-directed RNA polymerase; n=6;
Magnoliophyta|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1976
Score = 126 bits (305), Expect = 3e-27
Identities = 120/415 (28%), Positives = 191/415 (46%), Gaps = 45/415 (10%)
Query: 224 EVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTM 283
EV + RRIP+E L + + E IL LPVPP C+ SD + + D +
Sbjct: 179 EVKEILRRIPEESRKKLTAKGHIPQ-EGYILEYLPVPPNCLSVPEASDGFSTMSVDPSRI 237
Query: 284 KQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGL 343
+ ++L VIA + +G+ + ++ + ++ G A + G+
Sbjct: 238 ELKDVL--KKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAKAARNIDMRYGV 295
Query: 344 VQ-----RLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERV 398
+ K + R K FSSR+VI+ D + EVG+P+ +A+ +T+ ERV
Sbjct: 296 SKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERV 355
Query: 399 FPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVD 458
N +L++LV D +Y Q T L+ G++ ELK G VV R ++D
Sbjct: 356 SVHNRGYLQKLV----DDKLCLSYTQG---STTYSLRDGSKGHT--ELKPGQVVHRRVMD 406
Query: 459 GDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEAR 518
GDVV NR P+ HK S+ R V T + N +C+P +ADFDGD +++ PQ+ A+
Sbjct: 407 GDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAK 466
Query: 519 AEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFT 578
AE + L S+E+ L++ G+L++ D + ++ +R F
Sbjct: 467 AEVMELF-------------SVEK---QLLSSHTGQLILQMGSDSLLSLRVMLER-VFLD 509
Query: 579 KSEAQQLAACLLAGPDATMRIDMPPPAIIKPRK---LWTGKQIFSLIMRPNRRCE 630
K+ AQQLA + G + +PPPA+ K K WT QI L C+
Sbjct: 510 KATAQQLA---MYG-----SLSLPPPALRKSSKSGPAWTVFQILQLAFPERLSCK 556
Score = 56.4 bits (130), Expect = 4e-06
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 849 GFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVR 908
G V+ F+ GL P E H++ RE +V ++ AE G L + L+ L D+V+ D TVR
Sbjct: 739 GIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVR 798
Query: 909 N-ATGEVVQFRYGSD 922
N + V+QF+YG D
Sbjct: 799 NTCSNSVIQFKYGVD 813
Score = 50.8 bits (116), Expect = 2e-04
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 52 PHGVLDRRMGTNQKDANCETCGLGLAE-CVGHFGYIQLTLPVFHVGYFRAIITILQTICK 110
P + + +G + CE+CG + C GHFGYIQL +P++H + + +L +C
Sbjct: 40 PSQLTNAFLGLPLEFGKCESCGATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCL 99
Query: 111 ECAKV 115
+C K+
Sbjct: 100 KCLKI 104
>UniRef50_Q6YHB9 Cluster: DNA-directed RNA polymerase; n=5;
Ranavirus|Rep: DNA-directed RNA polymerase - Ambystoma
tigrinum stebbensi virus
Length = 1294
Score = 126 bits (304), Expect = 4e-27
Identities = 81/223 (36%), Positives = 114/223 (51%), Gaps = 19/223 (8%)
Query: 737 GYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSE-------LSSIRELAAKACFRELH 789
GYS C + E + T++ + LEA + L R+ L
Sbjct: 640 GYSDC---LTERPEETVRMVADAVCSKILEAEAADDEDGVSVALCGARDRGQAVTCAALT 696
Query: 790 PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFED--RSLPHFER-----HS 842
P N +M+++ SKG N++Q+ +GQQ + G R + RSLPH+ R H+
Sbjct: 697 PDNRMAVMSRAQSKGDMFNLTQIAGLLGQQYVGGSRPGKEIDGGRRSLPHYPRVWDSEHT 756
Query: 843 KIP-AARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL 901
+ +RGFV +SF GL P E FFH GREG++ T+ T TGY +R++VK EDLV
Sbjct: 757 TLKYESRGFVRSSFLKGLNPREVFFHAKSGREGMISTSQMTGVTGYAERKMVKLNEDLVS 816
Query: 902 QYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLAD 944
YD TVR+A G VVQF YG G+DP PV+ + LA+
Sbjct: 817 AYDGTVRDAMGNVVQFVYGGHGMDPQRCWSDGCPVNF-KTLAE 858
Score = 84.2 bits (199), Expect = 2e-14
Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 189 PIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLL-----GMN 243
P+V+ L+D H+ V G + M P +L R+ D D+ + G +
Sbjct: 128 PLVR--LVDAHDPCAIR--VTVRRKDGEPETMPPELILATLDRVRDSDVDRVLGRGKGSH 183
Query: 244 VKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAG 303
V+ P L++TR+PV P C RP+ +D+L++ S+I+ +N I A
Sbjct: 184 VRF-HPRRLVMTRMPVLPPCCRPNARQWPDGAMQDDNLSVFVSQIVKVNQRIK---ALEH 239
Query: 304 KCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRV 363
++ L+L ++++ + A +KP G+ +R+ K G R N+ GKR
Sbjct: 240 DDPAVEGLVAQLRLKTLCFVDNTKGKVMHATN-RKPMVGIKERIGKKGGLLRQNIMGKRR 298
Query: 364 DFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNG 413
+ + R+V+ PD L++ EVGVP +A LT P V P N+ +L ++ G
Sbjct: 299 NQTGRSVVGPDGTLEVDEVGVPEAIADNLTVPVMVTPFNVSYLEAMMREG 348
Score = 83.0 bits (196), Expect = 4e-14
Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 18/146 (12%)
Query: 445 ELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDG 504
+L+ G V R LVDGD V NRQP+LH+ S++ R K P +T R N V + +N DFDG
Sbjct: 418 KLEPGMTVTRCLVDGDPVALNRQPTLHRNSMLGMRVKRLPGKTIRLNLSVTSGFNMDFDG 477
Query: 505 DEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFI 564
DE N++LPQ +AR+E ++LM KS +++ R ++ QD +
Sbjct: 478 DEGNLYLPQGPQARSETMLLMNP----------------KSVIMSARGPHAEVSLVQDGV 521
Query: 565 TGGYLITQRDTFFTKSEAQQLAACLL 590
G +L++ ++LAACL+
Sbjct: 522 LGCHLMSLNSAI--PCPPEELAACLM 545
Score = 46.0 bits (104), Expect = 0.006
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 14 KISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGT---NQKDANCE 70
++ + F V SP I ++ +EV L + G V D RMG+ + ++A C
Sbjct: 10 QVEGLLFGVCSPEEILATSVVEVTKSCLKAETGS-------VYDPRMGSAGADDENALCP 62
Query: 71 TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKV 115
TC EC GHFG+I+L PV V +++ + L+ C C V
Sbjct: 63 TCENTGRECPGHFGHIELAKPV--VLFYKETVAWLKRCCHVCGAV 105
Score = 44.4 bits (100), Expect = 0.019
Identities = 22/36 (61%), Positives = 23/36 (63%)
Query: 1033 YQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAG 1068
Y V+ PG AVG L AQSIG TQ TL TFH AG
Sbjct: 934 YAAAVLCPGEAVGVLCAQSIGAKQTQQTLDTFHKAG 969
>UniRef50_Q3ZJ92 Cluster: DNA-directed RNA polymerase; n=1;
Pseudendoclonium akinetum|Rep: DNA-directed RNA
polymerase - Pseudendoclonium akinetum (Green alga)
Length = 1578
Score = 126 bits (303), Expect = 5e-27
Identities = 106/341 (31%), Positives = 154/341 (45%), Gaps = 48/341 (14%)
Query: 249 PEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELI 308
PE ++L+ LP+ P +RP + D + DL +L N + R
Sbjct: 1056 PEWMVLSVLPILPPALRPIIPLDSQQ-VAVSDLNKLYQTVLFRNKRVQRFYNDYYSLNF- 1113
Query: 309 QEDWDYLQLHA-----ALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRV 363
E+ Y Q AL N + + +P + L +KGK+GRFR NL GKRV
Sbjct: 1114 SEEMRYAQRLLQEAVDALIENGKGDSAAITASNNRPLKSLSDMIKGKKGRFRQNLLGKRV 1173
Query: 364 DFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV 423
D+S R+VI P L++ E G+P +A L P + RRL+ N++
Sbjct: 1174 DYSGRSVIVVGPKLRLHECGLPKEMAIELFQPFLI--------RRLIFK----EVATNFI 1221
Query: 424 QQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQ 483
KK +K N E I L R +++ VL NR P+LH+L I + K+
Sbjct: 1222 S-----AKKLIK-SNPESILDIL-------REVMENRPVLLNRAPTLHRLGIQAFQPKLI 1268
Query: 484 PQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQN 543
R + VC +NADFDGD+M +H+P + +A AEA LMGS N
Sbjct: 1269 SGRAILLHPLVCAAFNADFDGDQMAVHIPLSFQACAEAWKLMGSRN-------------- 1314
Query: 544 KSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQ 584
NL++P GE +I +QD + G Y +T D K + Q
Sbjct: 1315 --NLLSPATGEPIILPSQDMVLGCYYLTTLDRVKIKQKLSQ 1353
>UniRef50_Q9TL05 Cluster: DNA-directed RNA polymerase subunit beta';
n=1; Nephroselmis olivacea|Rep: DNA-directed RNA
polymerase subunit beta' - Nephroselmis olivacea
Length = 863
Score = 125 bits (302), Expect = 6e-27
Identities = 99/337 (29%), Positives = 158/337 (46%), Gaps = 35/337 (10%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGT-NEDDLTMKQSEILLINDVIARHLASAGKC 305
++PE +++ LPV P +RP V ++ G DL +L N+ +
Sbjct: 382 AQPEWMVIKALPVLPPDLRPIV--QLEGGRFATTDLNDLYRRVLNRNNRFMKLHKMVAPE 439
Query: 306 ELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDF 365
LI+ + LQ ++ G P+ +P + L LKGKQGRFR NL GKRVD+
Sbjct: 440 TLIRSEKRLLQEAVDGLFDNGKRGKPVLNSSNRPLKSLADALKGKQGRFRQNLLGKRVDY 499
Query: 366 SSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQ 425
S R+VI P L++ + G+P +A L P + RL+ V P Y ++
Sbjct: 500 SGRSVIVVGPKLRLHQCGLPKEMALELFQPLVI---------RLLLKRK-VAPNIRYAKK 549
Query: 426 RGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQ 485
+ G + D + +V+G +L NR P+LH+L I +
Sbjct: 550 L---MHHAVARGPENPTIIDAVVWDTLAA-VVEGYPILLNRAPTLHRLGIQAFEPVLING 605
Query: 486 RTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEA-LILMGSHNTAVTVIIRVSLEQNK 544
R + + VCT +NADFDGD+M +H+P + EARAEA L+++ SH
Sbjct: 606 RAIQLHPLVCTGFNADFDGDQMGVHIPLSAEARAEAKLLMLASH---------------- 649
Query: 545 SNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSE 581
NL++P G+ ++ +QD + G Y +T + + +E
Sbjct: 650 -NLLSPATGQPIVVPSQDMVLGWYYLTTENPWIESTE 685
>UniRef50_A4M8H7 Cluster: DNA-directed RNA polymerase; n=1;
Petrotoga mobilis SJ95|Rep: DNA-directed RNA polymerase
- Petrotoga mobilis SJ95
Length = 1643
Score = 125 bits (301), Expect = 8e-27
Identities = 105/331 (31%), Positives = 162/331 (48%), Gaps = 45/331 (13%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIK--AGTNEDDLTMKQSEILLINDVIARHLASAGK 304
++PE LI +PV P +RP + D A T+ +DL K ++ N+ + + L
Sbjct: 453 NQPEWLITNIIPVIPPDLRPLIQIDGGRFAATDLNDLYRK---VINRNNRLRKLLEMEAP 509
Query: 305 CELIQEDWDYLQLHA-ALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRV 363
+++ + LQ +L+ N + G P+ + ++P R L LKGK+GRFR NL GKRV
Sbjct: 510 EIIVRNEKRILQQAVDSLFYNGRV-GKPMTDRNRRPLRSLTDLLKGKKGRFRRNLLGKRV 568
Query: 364 DFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV 423
D+S R VI+ P+L+I E G+P +A E P L L R +N
Sbjct: 569 DYSGRAVIAVGPDLKIHECGLPKKMAL-----ELFKPFVLAELLR----------DSNVA 613
Query: 424 QQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQ 483
+ K KK + I +E+ V ++ G VL NR P+LH++SI K+
Sbjct: 614 SKSARKFKKTI-------IEKEMPEAWEVLEEVIKGHPVLLNRAPTLHRVSIQAFIPKLI 666
Query: 484 PQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQN 543
R + VC P+NADFDGD+M +H+P + A+AE+ LM S
Sbjct: 667 EGNAIRLHPLVCPPFNADFDGDQMAIHIPLSNIAQAESKFLMLS---------------- 710
Query: 544 KSNLVTPRNGELLIAATQDFITGGYLITQRD 574
+ N+++P NG+ L +D I G Y +T +
Sbjct: 711 RYNIISPANGKPLSMPGKDIIAGAYYLTMHE 741
Score = 67.7 bits (158), Expect = 2e-09
Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVA-SMNITQGVPRVKEIINASRNISTP 1094
++ G AVG +AAQSIGEPGTQ+T++TFH G+A + +ITQG+PR +E+ A + P
Sbjct: 1259 LVNRGEAVGIIAAQSIGEPGTQLTMRTFHTGGIATTSDITQGLPRAEELFEARKKTKGP 1317
Score = 48.0 bits (109), Expect = 0.002
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 851 VENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL 901
+ ++F GL+ EFF T G R+G DTA++T+ GYL RRLV + + +
Sbjct: 991 ITSNFKNGLSELEFFTSTHGSRKGSADTALRTSTAGYLTRRLVDVAQSITI 1041
>UniRef50_Q0LJX1 Cluster: DNA-directed RNA polymerase, subunit
beta-prime; n=2; cellular organisms|Rep: DNA-directed
RNA polymerase, subunit beta-prime - Herpetosiphon
aurantiacus ATCC 23779
Length = 1543
Score = 123 bits (297), Expect = 3e-26
Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 42/326 (12%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
+RPE +I+T LPV P +RP V D DL ++ N+ + R +
Sbjct: 399 NRPEWMIMTVLPVIPPDLRPMVQLD-GGRFATSDLNDLYRRVINRNNRLKRLMELNAPEI 457
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ I++ G P++ + K + L LKGKQGRFR NL GKRVD+S
Sbjct: 458 IVRNEKRMLQEAVDALIDNGRRGRPVSGKGKHRLKSLSDMLKGKQGRFRQNLLGKRVDYS 517
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI P LQ+ + G+P +A L P F +RRLV G A+ ++
Sbjct: 518 GRSVIVVGPTLQLHQCGLPKKMALELFKP---FV-----MRRLVDKG-----FAHNIK-- 562
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
K+++ E++ E+ DV+E + D +VL NR PSLH+LSI AK+
Sbjct: 563 --SAKRFV-----ERVRPEV--WDVLEEVIKD-YLVLLNRAPSLHRLSIQAFEAKLIEGS 612
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
+ + VC +NADFDGD+M +H+P + +A+ EA M S N
Sbjct: 613 AIQLHPLVCAAFNADFDGDQMAVHVPLSRKAQEEARRRMIS----------------TYN 656
Query: 547 LVTPRNGELLIAATQDFITGGYLITQ 572
L++P G+ +I +QD + G + +TQ
Sbjct: 657 LLSPATGDPIITPSQDIVLGCFYLTQ 682
Score = 70.9 bits (166), Expect = 2e-10
Identities = 34/52 (65%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVAS-MNITQGVPRVKEIINA 1087
++E G AVG +AAQSIGEPGTQ+TL+TFH GVA+ +ITQG+PRV+EI A
Sbjct: 1117 MVEIGEAVGIIAAQSIGEPGTQLTLRTFHTGGVATDTDITQGLPRVQEIFEA 1168
Score = 63.3 bits (147), Expect = 4e-08
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 684 LLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDG 743
LLR + E R R+ + + G +F DV ++ + K+ +++ Y K
Sbjct: 826 LLRFYASERTARLADRIKALGFKHATLGGMTFSASDV----EVPDTKDAIVQETYKK--- 878
Query: 744 YILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSK 803
+ ++EK +Q + T +E V+ + L + ++ + R L+P +M+ SG++
Sbjct: 879 -VQDIEK--MQRRGLITDDERYREVVTAWLDATNQIKVEVQ-RSLNPFGPVSMMSTSGAR 934
Query: 804 GSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTE 863
G N+ Q+ G + L P G R ++P F E GL+ E
Sbjct: 935 G---NVEQIRQMAGMRGLTTD--PTG----------RIIELPITANFRE-----GLSVIE 974
Query: 864 FFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL 901
+F T GGR+GL DTA++TA+ GYL RRLV +D+++
Sbjct: 975 YFISTHGGRKGLADTALRTADAGYLTRRLVDVAQDVIV 1012
>UniRef50_A7HNY1 Cluster: DNA-directed RNA polymerase, beta'
subunit; n=3; Bacteria|Rep: DNA-directed RNA polymerase,
beta' subunit - Fervidobacterium nodosum Rt17-B1
Length = 1650
Score = 123 bits (297), Expect = 3e-26
Identities = 101/339 (29%), Positives = 161/339 (47%), Gaps = 38/339 (11%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
++PE ++L LPV P IRP + D DL +++ N+ + + L
Sbjct: 515 TKPEWMVLEALPVVPPEIRPMIQID-GGRFATTDLNDLYRRVIMRNNRLKKLLEMNAPEV 573
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ I + G + + + L ++GK+GRFR NL GKRVD+S
Sbjct: 574 IVRNEKRMLQEAVDNLIFNGKIGKAYVDRNGRQLKSLTDLIRGKKGRFRRNLLGKRVDYS 633
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R VI P+L+I E G+P +A L P + A L + P
Sbjct: 634 GRAVIVVGPHLKIHECGLPKKMALELFEPFVI--AELS--KEENTEAPQT---------- 679
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
K KKY K RE + K + +E+ ++ G VVL NR P+LH++SI K+
Sbjct: 680 --KVKKYRKELQRE----DPKAWEKLEK-VIQGRVVLLNRAPTLHRMSIQAFEPKLIEGN 732
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
+ + VC P+NADFDGD+M +HLP + A+AEA +LM S + N
Sbjct: 733 AIQLHPLVCPPFNADFDGDQMAVHLPLSPAAQAEARLLMLS----------------RYN 776
Query: 547 LVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQL 585
+++P +G+ + +D + G Y +T D + K E + +
Sbjct: 777 IISPAHGKPISMPGKDIVAGVYYLTMVDKNYDKIEPENI 815
Score = 69.3 bits (162), Expect = 6e-10
Identities = 31/59 (52%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVA-SMNITQGVPRVKEIINASRNISTP 1094
V+ G +VG +AAQSIGEPGTQ+T++TFH G+A + +ITQG+PRV+E+ A + P
Sbjct: 1290 VVTVGESVGIIAAQSIGEPGTQLTMRTFHTGGIATTADITQGLPRVEELFEARKKTKDP 1348
Score = 50.0 bits (114), Expect = 4e-04
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 20/113 (17%)
Query: 789 HPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAAR 848
+P N IM SG++G+ + Q+ G A P+G R +IP
Sbjct: 981 NPFNPVYIMVDSGARGNKDQLKQLSGMRGLMA-----DPSG----------RTIEIPIIS 1025
Query: 849 GFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL 901
F E GL+ EFF T G R+G DTA++T+ GYL RRLV ++ +V+
Sbjct: 1026 NFRE-----GLSVLEFFISTHGARKGSADTALRTSSAGYLTRRLVDVVQSVVV 1073
>UniRef50_A5USR6 Cluster: DNA-directed RNA polymerase; n=4;
Chloroflexaceae|Rep: DNA-directed RNA polymerase -
Roseiflexus sp. RS-1
Length = 1504
Score = 123 bits (296), Expect = 3e-26
Identities = 106/325 (32%), Positives = 161/325 (49%), Gaps = 42/325 (12%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
+RPE +ILT LPV P +RP V D DL ++ N+ + R +
Sbjct: 398 NRPEWMILTVLPVIPPDLRPMVQLD-GGRFATSDLNDLYRRVINRNNRLKRLMELNAPEI 456
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ I++ G ++ + K + L LKGKQGRFR NL GKRVD+S
Sbjct: 457 IVRNEKRMLQEAVDALIDNGRRGRAVSGKGKHRLKSLSDMLKGKQGRFRQNLLGKRVDYS 516
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI P+L++ + G+P +A L P F +RRLV G
Sbjct: 517 GRSVIVVGPDLKLHQCGLPKKMALELFKP---FV-----MRRLVEKG----------FAH 558
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
+K+ K + E++ E+ DV+E + D +VL NR PSLH+LSI AK+
Sbjct: 559 NIKSAKRIV----ERVRPEV--WDVLEEVIKD-YLVLLNRAPSLHRLSIQAFEAKLIEGS 611
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
+ + VC +NADFDGD+M +H+P + +A+ EA + M S K N
Sbjct: 612 AIQLHPLVCAAFNADFDGDQMAVHVPLSRKAQEEARMRMLS----------------KYN 655
Query: 547 LVTPRNGELLIAATQDFITGGYLIT 571
L++P G+ +I +QD + G Y +T
Sbjct: 656 LLSPATGDPIITPSQDIVLGCYYLT 680
Score = 71.3 bits (167), Expect = 1e-10
Identities = 38/65 (58%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASM-NITQGVPRVKEIINASRNISTPI 1095
+++ G AVG +AAQSIGEPGTQ+TL+TFH GVAS +ITQG+PRV+EI A R
Sbjct: 1095 LVDIGEAVGIIAAQSIGEPGTQLTLRTFHTGGVASADDITQGLPRVQEIFEA-RTPKGKA 1153
Query: 1096 ITAEL 1100
I AE+
Sbjct: 1154 ILAEI 1158
Score = 60.1 bits (139), Expect = 4e-07
Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 684 LLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDG 743
L R +G E R+ + Y G + G+ D+ K K +L ++ +
Sbjct: 811 LARYFGSEMTASQADRIKTLGFRYATRGGMTIGVDDIEIPPK----KQDIL----AEAEK 862
Query: 744 YILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSK 803
+ E+E+ Q + G EE ++ + + +A + L+P +M S ++
Sbjct: 863 RVTEVER---QFRRGLITEEERYREIVEIWQNATKQTTEAVKQHLNPFGPVAMMVNSAAR 919
Query: 804 GSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTE 863
G NI+Q+ G + L P G R ++P ++++F GL+ E
Sbjct: 920 G---NINQLSQMAGMRGLMSD--PTG----------RIIELP-----IKSNFREGLSVLE 959
Query: 864 FFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYD 904
+F T GGR+GL DTA++TA+ GYL RRL+ +D ++ D
Sbjct: 960 YFVSTHGGRKGLADTALRTADAGYLTRRLIDVAQDNIVTID 1000
>UniRef50_Q890N5 Cluster: DNA-directed RNA polymerase subunit beta';
n=3; Clostridium|Rep: DNA-directed RNA polymerase
subunit beta' - Clostridium tetani
Length = 1135
Score = 123 bits (296), Expect = 3e-26
Identities = 102/326 (31%), Positives = 159/326 (48%), Gaps = 44/326 (13%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
+RP+ +I+ +PV P +RP V D DL ++ N+ + + L
Sbjct: 222 NRPDWMIIDVIPVIPPDLRPMVQLD-GGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDI 280
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ I++ G P+ +P + L LKGKQGRFR NL GKRVD+S
Sbjct: 281 IVRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYS 340
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI P L++ + G+P +A L P F +++LV G
Sbjct: 341 GRSVIVVGPELKMYQCGLPKEMALELFKP---FV-----MKKLVQGG----------LSH 382
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
+K+ K + E++ E+ DV+E + D V+L NR P+LH+L I + + R
Sbjct: 383 NIKSAKRMV----ERVQSEV--WDVLEEVISDHPVLL-NRAPTLHRLGIQAFQPVLVEGR 435
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILM-GSHNTAVTVIIRVSLEQNKS 545
+ + VCT YNADFDGD+M +HLP + EA+AEA LM +H
Sbjct: 436 AIKLHPLVCTAYNADFDGDQMAVHLPLSVEAQAEARFLMLAAH----------------- 478
Query: 546 NLVTPRNGELLIAATQDFITGGYLIT 571
N++ P +G+ + TQD + G Y +T
Sbjct: 479 NILKPSDGKPVCVPTQDMVLGSYYLT 504
Score = 70.9 bits (166), Expect = 2e-10
Identities = 32/60 (53%), Positives = 44/60 (73%)
Query: 1038 IEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIIT 1097
I G +VG +AAQSIGEPGTQ+T++TFH GVA +ITQG+PRV+E+ A + I++
Sbjct: 890 INIGESVGIIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKGLAIVS 949
Score = 64.9 bits (151), Expect = 1e-08
Identities = 73/306 (23%), Positives = 137/306 (44%), Gaps = 38/306 (12%)
Query: 630 EVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDW- 688
+V+ + E G+ G D C + + G +D+S G+ K + +++ +
Sbjct: 539 KVRISKEVDGEEVCGIID-CTPGKLIFNESIPQDLGFVDRSVPGNEVKLEVDFLINKSSL 597
Query: 689 ----GEEYAVRGMWRLARMASYYMMNRGFSF---GIIDVTPGKKLI-EAKNKLLESGYSK 740
+ Y G + + M + +G+ + G I V+ ++ EAK +LL ++
Sbjct: 598 GKLINKCYMKHGPTKTSIMLDK-IKEKGYHYSTIGAITVSTSDMVVPEAKKRLL----AE 652
Query: 741 CDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQS 800
D +E+ K + G E+ ++ + + +L A + L N +MA S
Sbjct: 653 TD---VEVNKIDKMYRRGFISEDERYERVIEKWTKTTDLVADELMKNLDRFNPIFMMADS 709
Query: 801 GSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLT 860
G++GS I Q+ G A P+G + ++P + SF GL
Sbjct: 710 GARGSKSQIKQLAGMRGLMAN-----PSG----------KIIELP-----IRASFREGLD 749
Query: 861 PTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYG 920
+E+F T G R+G DTA+KTA++GYL RRLV +D++++ + E+ + R G
Sbjct: 750 VSEYFISTHGARKGNADTALKTADSGYLTRRLVDVSQDVIVREEDCGSKEGFEISEIREG 809
Query: 921 SDGLDP 926
++ ++P
Sbjct: 810 NEIIEP 815
>UniRef50_A6PR79 Cluster: DNA-directed RNA polymerase, beta'
subunit; n=1; Victivallis vadensis ATCC BAA-548|Rep:
DNA-directed RNA polymerase, beta' subunit - Victivallis
vadensis ATCC BAA-548
Length = 1464
Score = 122 bits (295), Expect = 4e-26
Identities = 107/332 (32%), Positives = 159/332 (47%), Gaps = 44/332 (13%)
Query: 241 GMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGT-NEDDLTMKQSEILLINDVIARHL 299
G SRPE ++L+ LPV P +RP V ++ G DL ++ N+ + L
Sbjct: 229 GFMASNSRPEWMMLSVLPVIPPDLRPLV--PLEGGRFATSDLNDLYRRVINRNNRLKNLL 286
Query: 300 ASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLS 359
+I+ + LQ +++ G + +P + L LKGKQGRFR NL
Sbjct: 287 QLHTPDVIIRNEKRMLQEAVDSLLDNGRHGRAVTGAGNRPLKSLSDMLKGKQGRFRQNLL 346
Query: 360 GKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG 419
GKRVD+S R+VI P L+I + G+P +A IL P + R L G
Sbjct: 347 GKRVDYSGRSVIVVGPELKIHQCGLPKKMAMILFEPFII--------RHLKGRG-----F 393
Query: 420 ANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHR 479
A+ V RG KK ++ G E + D+++ + G V+ NR P+LH+LSI
Sbjct: 394 AHTV--RG--AKKMIERG-------EPQVWDILD-EVTKGHPVMLNRAPTLHRLSIQAFD 441
Query: 480 AKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVS 539
+ R + VCT YNADFDGD+M +H+P + EA+ E +LM S N
Sbjct: 442 PVLIEGSALRLHPLVCTAYNADFDGDQMAVHVPLSNEAQMETKLLMLSPN---------- 491
Query: 540 LEQNKSNLVTPRNGELLIAATQDFITGGYLIT 571
N+ +P NG+ +++ TQD G Y +T
Sbjct: 492 ------NIFSPANGKPIVSPTQDITLGSYYMT 517
Score = 55.6 bits (128), Expect = 8e-06
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 853 NSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATG 912
++F GL+ E+F T G R+GL DTA+KTA++GY+ RRLV +D++ + + TG
Sbjct: 751 SNFREGLSVLEYFISTHGARKGLADTALKTADSGYMTRRLVDVAQDIICREEDC---GTG 807
Query: 913 EVVQFRYGSDGLDPTYMEGKDR 934
+ V +G D T M KDR
Sbjct: 808 KGVWTSAIIEG-DETIMPLKDR 828
Score = 51.6 bits (118), Expect = 1e-04
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 1041 GTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGV 1078
G A+G +AAQSIGEPGTQ+T++TFH G AS Q V
Sbjct: 904 GDALGIIAAQSIGEPGTQLTMRTFHIGGTASSAYKQPV 941
>UniRef50_Q7VRP8 Cluster: DNA-directed RNA polymerase subunit beta';
n=16; cellular organisms|Rep: DNA-directed RNA
polymerase subunit beta' - Blochmannia floridanus
Length = 1420
Score = 122 bits (295), Expect = 4e-26
Identities = 104/340 (30%), Positives = 158/340 (46%), Gaps = 43/340 (12%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
++PE +IL LPV P +RP V D DL ++ N+ + R L +
Sbjct: 234 NKPEWMILNVLPVLPPDLRPLVPLD-GGRFATSDLNDLYRRVINRNNRLKRLLDLSAPEI 292
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ +++ G + K+P + L +KGKQGRFR NL GKRVD+S
Sbjct: 293 IVRNEKRMLQEAVDALLDNGRRGRAITGANKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 352
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI+ P L++ + G+P +A L P L+ L +
Sbjct: 353 GRSVITVGPYLKLHQCGLPKKMALELFKPFIYGQLELKGLASTI---------------- 396
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
K K +RE+ DV++ H V+ NR P+LH+L I + +
Sbjct: 397 ----KAAKKMVDREESVVWDILEDVIKEH-----PVMLNRAPTLHRLGIQAFEPILIEGK 447
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
+ + VC YNADFDGD+M +H+P T EA+ EA LM S N N
Sbjct: 448 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTN----------------N 491
Query: 547 LVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLA 586
+++P NGE +I +QD + G Y +T RD +K E L+
Sbjct: 492 ILSPANGEPIIVPSQDVVLGLYYMT-RDRINSKGEGMVLS 530
Score = 59.7 bits (138), Expect = 5e-07
Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 24/202 (11%)
Query: 707 YMMNRGFSFGIID-VTPGKK--LIEA-KNKLLESGYSKCDGYILEMEKGTLQCQPGCTME 762
Y G S GI D + P KK +I+A ++++ E G + E+ +
Sbjct: 633 YAARSGASVGIDDMIIPTKKVDIIDAAESEVAEIQEQFQTGLVTAGERYNKVIDIWASAN 692
Query: 763 ETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALN 822
E + M+ L++ + + N +MA SG++GS I Q+ G + L
Sbjct: 693 ERVSKAMMDNLATETVINSHGLLETQASFNNIFMMADSGARGSAAQIRQL---AGMRGLM 749
Query: 823 GKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKT 882
K P+G S+ + P F E GL ++F T G R+GL DTA+KT
Sbjct: 750 AK--PDG----SI------IETPITANFRE-----GLNVLQYFISTHGARKGLADTALKT 792
Query: 883 AETGYLQRRLVKSLEDLVLQYD 904
A +GYL RRLV +DLV+ D
Sbjct: 793 ANSGYLTRRLVDVAQDLVITQD 814
Score = 54.0 bits (124), Expect = 2e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVK 1082
++ G A+G +AAQSIGEPGTQ+T++TFH G AS ++ ++K
Sbjct: 916 LVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRVASESSIQIK 961
>UniRef50_A6DPM8 Cluster: DNA-directed RNA polymerase subunit beta';
n=1; Lentisphaera araneosa HTCC2155|Rep: DNA-directed
RNA polymerase subunit beta' - Lentisphaera araneosa
HTCC2155
Length = 1423
Score = 121 bits (291), Expect = 1e-25
Identities = 101/325 (31%), Positives = 151/325 (46%), Gaps = 42/325 (12%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
SRPE +I+ LPV P +RP V D DL ++ N+ + L
Sbjct: 236 SRPEWMIIETLPVIPPDLRPLVPLD-GGRFATSDLNDLYRRVINRNNRLKNLLHLRTPDV 294
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ +++ G + + + L LKGKQGRFR NL GKRVD+S
Sbjct: 295 IVRNEKRMLQEAVDSLLDNGRHGRAVTGASNRQLKSLSDMLKGKQGRFRQNLLGKRVDYS 354
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI P L++ + G+P +A +L P + R+L NG V
Sbjct: 355 GRSVIVVGPELKLHQCGIPKQMAMVLFEPFII--------RKLKDNG---------VAHT 397
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
KK ++ G E DV+E + G V+ NR P+LH+LSI + +
Sbjct: 398 VRAAKKMIERGAPE-------VWDVLE-SVTKGHPVMLNRAPTLHRLSIQAFDPVLIEGK 449
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
R + VCT YNADFDGD+M +H+P + EA+ E +L+ S N N
Sbjct: 450 ALRIHPLVCTAYNADFDGDQMAVHVPLSNEAQLECKLLLLSPN----------------N 493
Query: 547 LVTPRNGELLIAATQDFITGGYLIT 571
+++P NG+ L TQD G Y ++
Sbjct: 494 ILSPANGKPLCTPTQDMTLGCYYVS 518
Score = 54.8 bits (126), Expect = 1e-05
Identities = 24/49 (48%), Positives = 36/49 (73%)
Query: 853 NSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL 901
+SF GLT E+F + G R+GL DTA+KTA++GY+ R+LV +D+V+
Sbjct: 790 SSFREGLTVLEYFISSHGARKGLADTALKTADSGYMTRKLVDVSQDVVI 838
Score = 53.2 bits (122), Expect = 4e-05
Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVK 1082
+ + G AVG +AAQSIGEPGTQ+T++TFH G AS Q P +K
Sbjct: 941 IAQKGDAVGIIAAQSIGEPGTQLTMRTFHVGGTASTAYKQ--PMIK 984
>UniRef50_Q8RHI7 Cluster: DNA-directed RNA polymerase subunit beta';
n=4; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Fusobacterium nucleatum subsp. nucleatum
Length = 1319
Score = 121 bits (291), Expect = 1e-25
Identities = 98/326 (30%), Positives = 160/326 (49%), Gaps = 42/326 (12%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
+RPE +ILT +PV P +RP V D DL ++ N+ + + L
Sbjct: 221 NRPEWMILTNVPVIPAELRPMVQLD-GGRFATSDLNDLYRRVINRNNRLKKLLEIRAPEI 279
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ I++ G P+ Q + + L LKGKQGRFR NL GKRVD+S
Sbjct: 280 VVKNEKRMLQEAVDALIDNGRRGKPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYS 339
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
+R+VI P+L++ + G+P +A L P + + +RR + N
Sbjct: 340 ARSVIVVGPSLKMNQCGIPKKMALELYKPFIM----RELVRRELAN-------------- 381
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
+K K L + +K+ ++ DV+ H VL NR P+LH+LSI + + +
Sbjct: 382 NIKMAKKLVEESDDKVWAVIE--DVIADH-----PVLLNRAPTLHRLSIQAFQPVLIEGK 434
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
R + VC+ +NADFDGD+M +HL + E+ EA +LM + N N
Sbjct: 435 AIRLHPLVCSAFNADFDGDQMAVHLTLSPESMMEAKLLMFAPN----------------N 478
Query: 547 LVTPRNGELLIAATQDFITGGYLITQ 572
+++P +GE + +QD + G + +T+
Sbjct: 479 IISPSSGEPIAVPSQDMVMGCFYMTK 504
Score = 56.0 bits (129), Expect = 6e-06
Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 692 YAVRGMWRLARMASYYMMNRGFSFGII-DVTPGKKLIEAKNKLLESGYSKCDGYILEMEK 750
Y G A + + + N G+ +G V+ G + +E K +S ++ D + +++K
Sbjct: 583 YEAHGFTETAELINR-VKNFGYHYGTFAGVSVGIEDLEVPPKK-KSLLNQADKEVAQIDK 640
Query: 751 GTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINIS 810
+ G + E + S E A + L N +MA SG++G N+S
Sbjct: 641 ---DYKSGKIINEERYRKTIEVWSRTTEAVTDAMMKNLDEFNPVYMMATSGARG---NVS 694
Query: 811 QMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMG 870
QM G + G + R++ ++P ++ +F GLT EFF + G
Sbjct: 695 QMRQLAG---MRGNMADT--QGRTI-------EVP-----IKANFREGLTVLEFFMSSHG 737
Query: 871 GREGLVDTAVKTAETGYLQRRLVKSLEDLVL 901
R+GL DTA++TA++GYL RRLV ++++
Sbjct: 738 ARKGLADTALRTADSGYLTRRLVDISHEVIV 768
Score = 51.2 bits (117), Expect = 2e-04
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 1041 GTAVGALAAQSIGEPGTQMTLKTFHFAGVA 1070
G AVG +AAQSIGEPGTQ+T++TFH GVA
Sbjct: 870 GEAVGVVAAQSIGEPGTQLTMRTFHTGGVA 899
>UniRef50_A5Z8Z4 Cluster: DNA-directed RNA polymerase; n=2;
Bacteria|Rep: DNA-directed RNA polymerase - Eubacterium
ventriosum ATCC 27560
Length = 1270
Score = 120 bits (290), Expect = 2e-25
Identities = 112/397 (28%), Positives = 183/397 (46%), Gaps = 53/397 (13%)
Query: 191 VKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPE 250
+K++LMD KE+ + + + + K+ ++ L +F + ++PE
Sbjct: 180 IKELLMDIDVEKEAEQLKSELFEATGQKKAKIVKRLEVFEAFRNSG----------NKPE 229
Query: 251 DLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQE 310
+IL +PV P +RP V D DL I+ N+ + R L +++
Sbjct: 230 WMILDVIPVIPPDLRPMVQLD-GGRFATSDLNDLYRRIINRNNRLKRLLELGAPEIIVRN 288
Query: 311 DWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTV 370
+ LQ I++ G P+ + + L LKGKQGRFR NL GKRVD+S R+V
Sbjct: 289 EKRMLQEAVDALIDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSV 348
Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKT 430
I P L+I + G+P +A L P F ++ LV NG +K+
Sbjct: 349 IVVGPELKIYQCGLPKEMAIELFKP---FV-----MKELVANG----------TAHNIKS 390
Query: 431 KKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRF 490
K + + ++ L+ DV++ H V+ NR P+LH+L I + + +
Sbjct: 391 AKKMVERLQTEVWDVLE--DVIKEH-----PVMLNRAPTLHRLGIQAFEPILVEGKAIKL 443
Query: 491 NECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTP 550
+ VCT +NADFDGD+M +HLP + EA+AE L+ S N NL+ P
Sbjct: 444 HPLVCTAFNADFDGDQMAVHLPLSVEAQAECRFLLLSPN----------------NLLKP 487
Query: 551 RNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAA 587
+G + +QD + G Y +T D S+ +++A+
Sbjct: 488 SDGAPVAVPSQDMVLGIYYLTM-DRMVDHSKEEEIAS 523
Score = 72.1 bits (169), Expect = 8e-11
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 1038 IEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPII 1096
++ G AVG +AAQSIGEPGTQ+T++TFH GVA +ITQG+PRV+E+ A + II
Sbjct: 950 VQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKGLAII 1008
Score = 54.0 bits (124), Expect = 2e-05
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 23/144 (15%)
Query: 760 TMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQ 819
T EE + V+ + ++ EL A L N +MA SG++GS+ I Q+ G
Sbjct: 728 TDEERYKEVIETWQAADNELTT-ALLSGLDKYNNIFMMADSGARGSDKQIKQLAGMRGLM 786
Query: 820 A-LNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDT 878
A GK + LP ++++F GL E+F G R+G+ DT
Sbjct: 787 ADTTGKTI-------ELP--------------IKSNFREGLDVLEYFISAHGARKGMSDT 825
Query: 879 AVKTAETGYLQRRLVKSLEDLVLQ 902
A++TA++GYL RRLV +DL+++
Sbjct: 826 ALRTADSGYLTRRLVDVSQDLIIR 849
>UniRef50_Q7MX26 Cluster: DNA-directed RNA polymerase subunit beta';
n=35; root|Rep: DNA-directed RNA polymerase subunit
beta' - Porphyromonas gingivalis (Bacteroides
gingivalis)
Length = 1433
Score = 120 bits (290), Expect = 2e-25
Identities = 100/329 (30%), Positives = 162/329 (49%), Gaps = 46/329 (13%)
Query: 246 LSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKC 305
++RPE +++ +PV P +RP V D DL +++ N+ + R +
Sbjct: 244 VNRPEWMVMKVIPVIPPDLRPLVPLD-GGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPE 302
Query: 306 ELIQEDWDYLQLHA-ALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVD 364
+++ + LQ +L+ NS S + +P + L LKGKQGRFR NL GKRVD
Sbjct: 303 VILRNEKRMLQEAVDSLFDNSRKSSA-VKSDNNRPLKSLSDSLKGKQGRFRQNLLGKRVD 361
Query: 365 FSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQ 424
+S+R+VI P L++ E G+P +A L P + R+L+
Sbjct: 362 YSARSVIVVGPELKMHECGLPKDMAAELYKPFII--------RKLI-------------- 399
Query: 425 QRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP 484
+RG+ K +K + +E D++E +++ G VL NR P+LH+L I + K+
Sbjct: 400 ERGI--VKTVKSAKKIVDRKEPVIWDILE-YVMKGHPVLLNRAPTLHRLGIQAFQPKLIE 456
Query: 485 QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEA-LILMGSHNTAVTVIIRVSLEQN 543
+ + + CT +NADFDGD+M +HLP + EA EA L+++ SH
Sbjct: 457 GKAIQLHPLSCTAFNADFDGDQMAVHLPLSNEAILEAQLLMLASH--------------- 501
Query: 544 KSNLVTPRNGELLIAATQDFITGGYLITQ 572
N++ P NG + +QD + G Y IT+
Sbjct: 502 --NILNPANGAPITVPSQDMVLGLYYITK 528
Score = 60.5 bits (140), Expect = 3e-07
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 22/197 (11%)
Query: 706 YYMMNRG-FSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEET 764
YYM +G SF + DV + + K++L++ GY+ + + + G +
Sbjct: 635 YYMAFKGGLSFNLADVL----IPDEKDQLIQEGYTAVEQIMQDYSMGFITFNERYNQIID 690
Query: 765 LEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGK 824
+ LS++ K + N+ +M SG++GS I Q+ G + L K
Sbjct: 691 TWTHINGRLSNV---LIKQLSSDNDGFNSVFMMMDSGARGSKEQIRQLS---GMRGLMAK 744
Query: 825 RVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAE 884
+G E + + ++F GL+ E+F T G R+GL DTA+KTA+
Sbjct: 745 PQKSGAEGGQI-----------IENPILSNFKEGLSVLEYFISTHGARKGLADTALKTAD 793
Query: 885 TGYLQRRLVKSLEDLVL 901
GYL RRLV D+++
Sbjct: 794 AGYLTRRLVDVSHDVII 810
Score = 54.4 bits (125), Expect = 2e-05
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQ 1076
+++ G VG +AAQSIGEPGTQ+TL+TFH G+AS T+
Sbjct: 909 MVQRGEVVGVIAAQSIGEPGTQLTLRTFHVGGIASNVATE 948
>UniRef50_A2ZAM7 Cluster: DNA-directed RNA polymerase; n=9;
Magnoliophyta|Rep: DNA-directed RNA polymerase - Oryza
sativa subsp. indica (Rice)
Length = 1278
Score = 120 bits (289), Expect = 2e-25
Identities = 77/168 (45%), Positives = 93/168 (55%), Gaps = 32/168 (19%)
Query: 347 LKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWL 406
LK K+ RGNL GKRVDFS+ +P +A LTYPE V P N Q
Sbjct: 1133 LKAKERSSRGNLMGKRVDFSA----------------LPWSIALNLTYPETVTPYNFQGA 1176
Query: 407 RRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNR 466
+ ++ G YV++R T +YL+ G VERHL DGD VLFNR
Sbjct: 1177 KYIIW-GDAQRLDLCYVKKR---TDQYLELGYN------------VERHLDDGDFVLFNR 1220
Query: 467 QPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQT 514
QPSLHK+ IM HR K+ P TF N +PYNADFDGDEMNMH+PQ+
Sbjct: 1221 QPSLHKMYIMGHRIKIMPYSTFHLNLSATSPYNADFDGDEMNMHVPQS 1268
>UniRef50_P36252 Cluster: DNA-directed RNA polymerase subunit beta';
n=2; Thermotoga|Rep: DNA-directed RNA polymerase subunit
beta' - Thermotoga maritima
Length = 1690
Score = 120 bits (289), Expect = 2e-25
Identities = 104/333 (31%), Positives = 162/333 (48%), Gaps = 49/333 (14%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGT-NEDDLTMKQSEILLINDVIARHLASAGKC 305
++PE ++L +PV P +RP + I+ G DL ++ N+ + + L
Sbjct: 516 NKPEWMVLEVVPVIPPDLRPMI--QIEGGRFATTDLNELYRRLINRNNRLKKLLELGAPE 573
Query: 306 ELIQEDWDYLQ--LHAALYINSEMSG-----IPLAMQPKKPGRGLVQRLKGKQGRFRGNL 358
+++ + LQ + A ++ S+ G L + +P + L LKGK+GRFR NL
Sbjct: 574 IILRNEKRMLQEAVDALIHNGSDSEGKRSRRAVLKDRNGRPLKSLTDLLKGKKGRFRRNL 633
Query: 359 SGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHP 418
GKRVD+S R VI PNL+I + G+P +A L P F L +L+ G
Sbjct: 634 LGKRVDYSGRAVIVVGPNLKIHQCGIPKKMAMELFKP---FV-----LAKLLGEGSSS-- 683
Query: 419 GANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCH 478
KT + +K EK E +V+E ++ G VVL NR P+LH++SI
Sbjct: 684 ----------KTMRKVKKAIIEKEMPE--AWEVLEE-VIKGSVVLLNRAPTLHRMSIQAF 730
Query: 479 RAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRV 538
K+ + + VC P+NADFDGD+M +H+P + A+AEA LM S
Sbjct: 731 EPKLVEGNAIQLHPVVCPPFNADFDGDQMAVHVPLSAAAQAEARFLMLS----------- 779
Query: 539 SLEQNKSNLVTPRNGELLIAATQDFITGGYLIT 571
+ N+++P +G+ + TQD I G Y +T
Sbjct: 780 -----RYNIISPAHGKPISLPTQDIIIGSYYLT 807
Score = 53.6 bits (123), Expect = 3e-05
Identities = 24/48 (50%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGV-ASMNITQGVPRVKE 1083
++ G AVG +AAQSIGEPGTQ+T++TFH GV + +I G+ V++
Sbjct: 1315 IVNVGEAVGVVAAQSIGEPGTQLTMRTFHVGGVMGASDIVSGLTTVEK 1362
Score = 47.6 bits (108), Expect = 0.002
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 756 QPGCTMEETLEAVMLSELSSIRELAAKACFREL--HPTNAPLIMAQSGSKGSNINISQMI 813
+ G EE ++ ++ S+ E K + L P N +M SG++G NI Q+
Sbjct: 956 EKGFLTEEQRKSEIIRLWMSVTEEITKLTSKTLAEDPFNPIYMMVNSGARG---NIDQVK 1012
Query: 814 ACVGQQALNGKRV-PNGFEDRSLPHFERHSKIPAARGF---VENSFYTGLTPTEFFFHTM 869
G + L K P E +S + I A F V+ + G+ +FF T
Sbjct: 1013 QLAGIRGLMIKAYDPRSREIKS--KIFKGQAIHEALTFDYPVDKNLREGVDILQFFISTY 1070
Query: 870 GGREGLVDTAVKTAETGYLQRRLV 893
G R+G VDTA+ T+ GYL RRLV
Sbjct: 1071 GARKGQVDTAMNTSFAGYLTRRLV 1094
>UniRef50_Q19V99 Cluster: DNA-directed RNA polymerase; n=2;
Streptophyta|Rep: DNA-directed RNA polymerase -
Chlorokybus atmophyticus (Soil alga)
Length = 717
Score = 120 bits (288), Expect = 3e-25
Identities = 105/337 (31%), Positives = 155/337 (45%), Gaps = 53/337 (15%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNED--DLTMK----QSEILLINDVIARHLA 300
++PE +IL+ LPV P +RP V D D DL + + + +N ++A +
Sbjct: 252 AKPEWMILSILPVLPPDLRPMVQLDGGQFATSDLNDLYRRVINRNNRLSKLNTMLAPEIV 311
Query: 301 SAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSG 360
+ ++QE D AL N + L K P + L +KGKQGRFR NL G
Sbjct: 312 VRSEKRMLQEAVD------ALIDNGKRGRQALVGSNKIPLKSLSDIIKGKQGRFRQNLLG 365
Query: 361 KRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGA 420
KRVD+S R+VI P L++ + G+P +A L P F +H
Sbjct: 366 KRVDYSGRSVIVVGPQLKLHQCGLPKEMAIELFQP---FV---------------IHNLI 407
Query: 421 NYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRA 480
N +K K N I + LK ++ G VL NR P+LH+L I
Sbjct: 408 NQGLANNIKAAKRKLQNNDPSIWEVLK-------QVIQGHPVLLNRAPTLHRLGIQAFEP 460
Query: 481 KVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSL 540
+ R + + VC +NADFDGD+M +H+P + EA+ EA +LM +
Sbjct: 461 ILVEGRAIQLHPLVCPAFNADFDGDQMAVHIPLSLEAQTEARLLMLA------------- 507
Query: 541 EQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFF 577
SNL++P G+ +IA +QD I G Y +T + F
Sbjct: 508 ---SSNLLSPATGQPIIAPSQDMILGCYYLTTENPKF 541
>UniRef50_Q82DQ4 Cluster: DNA-directed RNA polymerase subunit beta';
n=26; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Streptomyces avermitilis
Length = 1299
Score = 120 bits (288), Expect = 3e-25
Identities = 100/323 (30%), Positives = 154/323 (47%), Gaps = 42/323 (13%)
Query: 249 PEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELI 308
P+ ++L +PV P +RP V D DL ++ N+ + R L ++
Sbjct: 309 PKGMVLDCVPVIPPDLRPMVQLD-GGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIV 367
Query: 309 QEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSR 368
+ LQ ++ G P+ +P + L LKGKQGRFR NL GKRVD+S+R
Sbjct: 368 NNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSAR 427
Query: 369 TVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGL 428
+VI P L++ + G+P +A L P F ++RLV N+ Q +
Sbjct: 428 SVIVVGPQLKLHQCGLPKAMALELFKP---FV-----MKRLV--------DLNHAQN--I 469
Query: 429 KTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTF 488
K+ K + R + L+ +V+ H VL NR P+LH+L I ++ +
Sbjct: 470 KSAKRMVERGRTVVYDVLE--EVIAEH-----PVLLNRAPTLHRLGIQAFEPQLVEGKAI 522
Query: 489 RFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLV 548
+ + VCT +NADFDGD+M +HLP + EA+AEA ILM S N N++
Sbjct: 523 QIHPLVCTAFNADFDGDQMAVHLPLSAEAQAEARILMLSSN----------------NIL 566
Query: 549 TPRNGELLIAATQDFITGGYLIT 571
P +G + TQD + G + +T
Sbjct: 567 KPADGRPVTMPTQDMVLGLFFLT 589
Score = 70.1 bits (164), Expect = 3e-10
Identities = 31/51 (60%), Positives = 41/51 (80%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINA 1087
+++ G AVG +AAQSIGEPGTQ+T++TFH GVA +ITQG+PRV E+ A
Sbjct: 982 LVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVVELFEA 1032
Score = 59.7 bits (138), Expect = 5e-07
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 743 GYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGS 802
GY + EK Q + G ++ +++ + A+A TN +M SG+
Sbjct: 743 GYEAQDEKVQKQYERGLITKDERTQELIAIWTKATNEVAEAMNANFPKTNPIFMMVDSGA 802
Query: 803 KGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPT 862
+G N+ QM G + L V N ++ IP ++ SF GL+
Sbjct: 803 RG---NMMQMRQIAGMRGL----VSNA----------KNETIPRP---IKASFREGLSVL 842
Query: 863 EFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
E+F T G R+GL DTA++TA++GYL RRLV +D++++
Sbjct: 843 EYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIR 882
>UniRef50_Q7U8K3 Cluster: DNA-directed RNA polymerase subunit gamma;
n=500; cellular organisms|Rep: DNA-directed RNA
polymerase subunit gamma - Synechococcus sp. (strain
WH8102)
Length = 634
Score = 119 bits (287), Expect = 4e-25
Identities = 93/325 (28%), Positives = 154/325 (47%), Gaps = 42/325 (12%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
+RPE ++L +PV P +RP V D DL ++ N+ +AR
Sbjct: 243 ARPEWMVLDVIPVIPPDLRPMVQLD-GGRFATSDLNDLYRRVINRNNRLARLQEILAPEI 301
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ I++ G + +P + L ++GKQGRFR NL GKRVD+S
Sbjct: 302 IVRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYS 361
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI P L++ + G+P +A L P + + +R+ + N
Sbjct: 362 GRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIH----RLIRQNIVNN------------- 404
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
+K K L +++ Q L+ ++DG ++ NR P+LH+L I K+ R
Sbjct: 405 -IKAAKKLIQRADDEVMQVLQ-------EVIDGHPIMLNRAPTLHRLGIQAFEPKLVDGR 456
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
+ + VC +NADFDGD+M +H+P EA+ EA +LM + N N
Sbjct: 457 AIQLHPLVCPAFNADFDGDQMAVHVPLAIEAQTEARMLMLASN----------------N 500
Query: 547 LVTPRNGELLIAATQDFITGGYLIT 571
+++P GE ++ +QD + G Y +T
Sbjct: 501 ILSPATGEPIVTPSQDMVLGSYYLT 525
>UniRef50_Q2LQ86 Cluster: DNA-directed RNA polymerase subunit beta';
n=6; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Syntrophus aciditrophicus (strain SB)
Length = 1381
Score = 119 bits (286), Expect = 5e-25
Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 44/327 (13%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
+RPE +ILT LPV P +RP V D DL ++ N+ + R
Sbjct: 233 NRPEWMILTVLPVIPPDLRPLVPLD-GGRFATSDLNDLYRRVINRNNRLKRLQELNAPEI 291
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+I+ + LQ + ++ G + K+P + L LKGKQGRFR NL GKRVD+S
Sbjct: 292 IIRNEKRMLQEAVDVLFDNGRRGRAITGTNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYS 351
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI+ P+L++ + G+P +A L+ + P V+ N +Q++
Sbjct: 352 GRSVITVGPDLRLHQCGLPKKMA-------------LELFK------PFVY---NRLQEK 389
Query: 427 G-LKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQ 485
G + T K K + A+ D V R V+ NR P+LH+L + +
Sbjct: 390 GYVTTVKSAKKMVERETAEVWDALDEVVREY----PVMLNRAPTLHRLGLQAFEPVLIEG 445
Query: 486 RTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKS 545
+ + + VCT +NADFDGD+M +H+P + EA+ EA +LM S N
Sbjct: 446 KAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQTEARVLMMSTN---------------- 489
Query: 546 NLVTPRNGELLIAATQDFITGGYLITQ 572
N+++P NG+ +I +QD + G Y +T+
Sbjct: 490 NILSPANGKPIIIPSQDVVLGIYYLTR 516
Score = 79.8 bits (188), Expect = 4e-13
Identities = 104/389 (26%), Positives = 169/389 (43%), Gaps = 68/389 (17%)
Query: 689 GEEYAVRGMWRLARMASYYMMNRGFSFGI--IDVTPGKK--LIEAKNKLLESGYSKCDGY 744
GE+ V RL M Y + G SF + +++ KK ++ A +LE DG
Sbjct: 601 GEKTTVILADRLKDMGFKYATHSGMSFAVRNLNIPKNKKDIVVRADRDVLEIQKQYMDGL 660
Query: 745 ILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKG 804
I + E+ E + + M+ + + ++ + + + N +MA SG++G
Sbjct: 661 ITDGERYNKVIDLWAQATEKIASEMMGGIETEEQITTEGK-KVVESFNPIYMMADSGARG 719
Query: 805 SNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEF 864
SN I Q+ G + L K P+G E P + +F GLT ++
Sbjct: 720 SNAQIRQL---AGMRGLMAK--PSG-EIIETP--------------ITANFREGLTVLQY 759
Query: 865 FFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGL 924
F T G R+GL DTA+KTA +GY L + L D+ +T ++ G V DG+
Sbjct: 760 FISTHGARKGLADTALKTANSGY----LTRRLVDVAQDCIITQQDC-GTV-------DGI 807
Query: 925 DPTYMEGKDRPVDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFKN 984
+ + ++ A R +D +P G+ +V A +E DE +
Sbjct: 808 SVSALMEGGEIIETAGERVLGRVVLEDI-MDPFTGEVLVGANQEI----------DESLS 856
Query: 985 ELLSFLKATAGRVRAL---RARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPG 1041
E + + R+R++ +A+Y C R + R H + ++ G
Sbjct: 857 EKIDRAGIESVRIRSVLTCKAKYGVCARC--------------YGRDLGHGH---LVNIG 899
Query: 1042 TAVGALAAQSIGEPGTQMTLKTFHFAGVA 1070
AVG +AAQSIGEPGTQ+T++TFH G A
Sbjct: 900 EAVGIIAAQSIGEPGTQLTMRTFHIGGTA 928
>UniRef50_Q2W2I2 Cluster: DNA-directed RNA polymerase subunit beta';
n=4; Proteobacteria|Rep: DNA-directed RNA polymerase
subunit beta' - Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264)
Length = 1496
Score = 119 bits (286), Expect = 5e-25
Identities = 99/329 (30%), Positives = 157/329 (47%), Gaps = 43/329 (13%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
SRPE +IL +PV P +RP V D DL ++ N+ + R +
Sbjct: 233 SRPEWMILEVIPVIPPELRPLVPLD-GGRFATSDLNDLYRRVINRNNRLKRLIELRAPEI 291
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ ++ G + K+P + L LKGKQGRFR NL GKRVD+S
Sbjct: 292 IVRNEKRMLQEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYS 351
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI P L++ + G+P +A L+ + V + ++ Y
Sbjct: 352 GRSVIVVGPELKLHQCGLPKKMA-------------LELFKPFVYSKLEL-----YGMAT 393
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
+K K + R ++ L+ +V+ H V+ NR P+LH+L I + +
Sbjct: 394 TIKAAKRMVEKERPEVWDILE--EVIREH-----PVMLNRAPTLHRLGIQAFEPVLIEGK 446
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
+ + VCT +NADFDGD+M +H+P + EA+ EA +LM S N N
Sbjct: 447 AIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTN----------------N 490
Query: 547 LVTPRNGELLIAATQDFITGGYLIT-QRD 574
+++P NG+ +I +QD + G Y IT +RD
Sbjct: 491 ILSPANGKPIIVPSQDIVLGIYYITMERD 519
Score = 58.8 bits (136), Expect = 8e-07
Identities = 68/251 (27%), Positives = 110/251 (43%), Gaps = 33/251 (13%)
Query: 655 VIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFS 714
VI+ ++ V S+ L ++ ++ R G++ V R+ + G S
Sbjct: 682 VILPKNKNVPFSLINRLLTKKEIQNVIDVVYRHCGQKETVIFADRVMGLGYSNAFKAGIS 741
Query: 715 FGIID--VTPGKKLI--EAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVML 770
FG D + P K+ + E + K E DG I + EK + + M+
Sbjct: 742 FGKDDLVIPPEKETLVGETEEKAKEYEQQYQDGLITQGEKYNKVVDAWSKCTDDVADAMM 801
Query: 771 SELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGF 830
++SS+ + K N+ +MA SG++GS + Q+ G + L K P+G
Sbjct: 802 KQISSL--VPGKQI-------NSIYMMAHSGARGSAAQMKQL---AGMRGLMAK--PSG- 846
Query: 831 EDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQR 890
E P + ++F GLT E+F T G R+GL DTA+KTA +GYL R
Sbjct: 847 EIIETP--------------IISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTR 892
Query: 891 RLVKSLEDLVL 901
RLV +D ++
Sbjct: 893 RLVDVAQDAII 903
Score = 52.0 bits (119), Expect = 9e-05
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 1038 IEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQ 1076
+ G AVG +AAQSIGEPGTQ+T++TFH G A Q
Sbjct: 1003 VNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQ 1041
>UniRef50_Q9MUS6 Cluster: DNA-directed RNA polymerase subunit beta';
n=1; Mesostigma viride|Rep: DNA-directed RNA polymerase
subunit beta' - Mesostigma viride
Length = 668
Score = 119 bits (286), Expect = 5e-25
Identities = 104/334 (31%), Positives = 162/334 (48%), Gaps = 54/334 (16%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNED--DLTMK----QSEILLINDVIARHLA 300
++PE ++L+ LPV P +RP V D D DL + + + +N+++A +
Sbjct: 277 AKPEWMVLSILPVLPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLAKLNNMLAPEIV 336
Query: 301 SAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSG 360
+ ++QE D L I++ G L K P + L +KGKQGRFR NL G
Sbjct: 337 VRSEKRMLQESVDAL-------IDNGKRGKALVGNNKIPLKSLSDIIKGKQGRFRQNLLG 389
Query: 361 KRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGA 420
KRVD+S R+VI PNL++ + G+P +A L P F + L+ G A
Sbjct: 390 KRVDYSGRSVIVVGPNLKLHQCGLPKEMAIELFQP---FV-----IHTLINEGL-----A 436
Query: 421 NYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRA 480
N ++ KK ++ N + I E + ++ G VL NR P+LH+L I
Sbjct: 437 NNIK----GAKKIIQ--NSDPILWE------ILNQVIQGHPVLLNRAPTLHRLGIQAFEP 484
Query: 481 KVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSL 540
+ R + + VC +NADFDGD+M +H+P + EA+ EA +LM +
Sbjct: 485 ILVEGRAIQLHPLVCPAFNADFDGDQMAVHIPLSLEAQTEARLLMLA------------- 531
Query: 541 EQNKSNLVTPRNGELLIAATQDFITGGYLITQRD 574
SNL++P G +I+ +QD + G Y +T D
Sbjct: 532 ---SSNLLSPATGLPIISPSQDMVLGCYYLTTED 562
>UniRef50_Q9CK92 Cluster: DNA-directed RNA polymerase subunit beta';
n=86; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Pasteurella multocida
Length = 1417
Score = 118 bits (285), Expect = 7e-25
Identities = 99/339 (29%), Positives = 159/339 (46%), Gaps = 43/339 (12%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
++PE +++T LPV P +RP V D DL ++ N+ + R L
Sbjct: 233 NKPEWMVMTVLPVLPPDLRPLVPLD-GGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDI 291
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ +++ G + ++P + L +KGKQGRFR NL GKRVD+S
Sbjct: 292 IVRNEKRMLQESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYS 351
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI+ P L + + G+P +A L+ R + + A+ ++
Sbjct: 352 GRSVITVGPYLHLHQCGLPKKMA-------------LELFRPFIYAKLESRGFASTIK-- 396
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
KK ++ + I ++ DV+ H +L NR P+LH+L I + +
Sbjct: 397 --AAKKMVE--REDAIVWDI-LADVIREH-----PILLNRAPTLHRLGIQAFEPLLIEGK 446
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
+ + VC +NADFDGD+M +H+P T EA+ EA LM S N N
Sbjct: 447 AIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLEARALMMSTN----------------N 490
Query: 547 LVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQL 585
+++P NGE +I +QD + G Y +T RD K E L
Sbjct: 491 ILSPANGEPIIVPSQDVVLGLYYMT-RDKVNGKGEGMLL 528
Score = 60.9 bits (141), Expect = 2e-07
Identities = 68/243 (27%), Positives = 104/243 (42%), Gaps = 24/243 (9%)
Query: 666 SMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIID-VTPGK 724
S+ TLG S + R G + +V ++ Y G S GI D V P K
Sbjct: 591 SLFNQTLGKKAISKLINESYRRLGMKPSVLFADQIMYTGFAYAARSGSSVGIDDMVIPAK 650
Query: 725 K---LIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAA 781
K + A++++ E G + E+ E + M+ LS+ +
Sbjct: 651 KYEIISAAEDEVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINR 710
Query: 782 KACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERH 841
+ + N+ +MA SG++GS I Q+ G + L + P+G S+
Sbjct: 711 EGQPEKQASFNSIFMMADSGARGSAAQIRQL---AGMRGLMAR--PDG----SI------ 755
Query: 842 SKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL 901
+ P F E GL ++F T G R+GL DTA+KTA +GYL RRLV +DLV+
Sbjct: 756 IETPITANFRE-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVI 810
Query: 902 QYD 904
D
Sbjct: 811 IED 813
Score = 54.8 bits (126), Expect = 1e-05
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVK 1082
+I G AVG +AAQSIGEPGTQ+T++TFH G AS + +VK
Sbjct: 909 LINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVK 954
>UniRef50_Q7VKL8 Cluster: DNA-directed RNA polymerase subunit beta';
n=685; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Haemophilus ducreyi
Length = 1420
Score = 117 bits (281), Expect = 2e-24
Identities = 97/335 (28%), Positives = 159/335 (47%), Gaps = 43/335 (12%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
++PE +++T LPV P +RP V D DL ++ N+ + R L
Sbjct: 233 NKPEWMVMTVLPVLPPDLRPLVPLD-GGRFATSDLNDLYRRVINRNNRLKRLLGLVAPDI 291
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ +++ G + K+P + L +KGKQGRFR NL GKRVD+S
Sbjct: 292 IVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 351
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI+ P L + + G+P +A L+ R + + + A+ ++
Sbjct: 352 GRSVITVGPYLHLHQCGLPKKMA-------------LELFRPFIYSKLESRGIASTIK-- 396
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
KK ++ E I ++ +V+ H +L NR P+LH+L I + +
Sbjct: 397 --AAKKMVE--REEPIVWDI-LAEVIREH-----PILLNRAPTLHRLGIQAFEPLLIEGK 446
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
+ + VC +NADFDGD+M +H+P T EA+ EA LM S N N
Sbjct: 447 AIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLEARALMMSTN----------------N 490
Query: 547 LVTPRNGELLIAATQDFITGGYLITQRDTFFTKSE 581
+++P +G+ +I +QD + G Y +T RD K E
Sbjct: 491 VLSPASGDPIIVPSQDVVLGLYYMT-RDKVNGKGE 524
Score = 60.9 bits (141), Expect = 2e-07
Identities = 68/243 (27%), Positives = 104/243 (42%), Gaps = 24/243 (9%)
Query: 666 SMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIID-VTPGK 724
S+ TLG S + R G + +V ++ Y G S GI D V P +
Sbjct: 591 SVFNQTLGKKAISKLINESYRRLGLKESVVLADQIMYTGFAYAARSGVSVGIDDMVIPAQ 650
Query: 725 K---LIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAA 781
K + A+ ++ E G + E+ E + M+ LS+ L
Sbjct: 651 KNDIITAAEAEVAEIQEQFNSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEMLNR 710
Query: 782 KACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERH 841
+ + N+ +MA SG++GS + I Q+ G + L + P+G S+
Sbjct: 711 EGNPEKQASFNSIFMMADSGARGSAVQIRQL---AGMRGLMAR--PDG----SI------ 755
Query: 842 SKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL 901
+ P F E GL ++F T G R+GL DTA+KTA +GYL RRLV +DLV+
Sbjct: 756 IETPITANFRE-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVI 810
Query: 902 QYD 904
D
Sbjct: 811 TED 813
Score = 54.8 bits (126), Expect = 1e-05
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVK 1082
+I G AVG +AAQSIGEPGTQ+T++TFH G AS + +VK
Sbjct: 909 LINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVK 954
>UniRef50_O67763 Cluster: DNA-directed RNA polymerase subunit beta';
n=5; Aquificaceae|Rep: DNA-directed RNA polymerase
subunit beta' - Aquifex aeolicus
Length = 1574
Score = 117 bits (281), Expect = 2e-24
Identities = 112/362 (30%), Positives = 170/362 (46%), Gaps = 51/362 (14%)
Query: 212 INSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSD 271
I S +++E+S + R + + G +RPE +IL LPV P +RP V D
Sbjct: 332 IRSTVLREISEARIRKALRTLQLVE----GFKKSGNRPEWMILEVLPVLPPELRPLVALD 387
Query: 272 IKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIP 331
DL ++ N+ + R + +I+ + LQ I++ G P
Sbjct: 388 -GGRFATSDLNDFYRRVINRNNRLKRLIELNAPDIIIRNEKRMLQEAVDALIDNGKRGNP 446
Query: 332 LAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKI 391
+ Q +P + L LKGKQGRFR NL GKRVD+S R+VI P LQ+ + G+P +A
Sbjct: 447 VK-QNGRPLKSLADYLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELQMHQCGLPKIMALE 505
Query: 392 LTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTK-KYLKYGNREKIAQELKC-G 449
L P V+ RRL +++G T K+ K +K + +C
Sbjct: 506 LFKP-FVY-------RRL--------------EEKGYATSIKHAKRLVEQKTPEVWECLE 543
Query: 450 DVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNM 509
+VV+ H VL NR P+LH+ SI + + + + VC P+NADFDGD+M +
Sbjct: 544 EVVKEH-----PVLLNRAPTLHRPSIQAFEPVLVEGKAIQLHPLVCPPFNADFDGDQMAV 598
Query: 510 HLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYL 569
H+P EA+ E+ ILM S N+++P +G+ L +QD + G Y
Sbjct: 599 HVPLGIEAQLESYILMLS----------------TQNVLSPAHGKPLTMPSQDMVLGTYY 642
Query: 570 IT 571
IT
Sbjct: 643 IT 644
Score = 56.0 bits (129), Expect = 6e-06
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 1034 QRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQ 1076
QR ++ G AVG +AAQSIGEPGTQ+T++TFH G A+ Q
Sbjct: 1019 QRKIVSVGEAVGIIAAQSIGEPGTQLTMRTFHIGGAATAQKVQ 1061
Score = 55.2 bits (127), Expect = 1e-05
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 20/214 (9%)
Query: 689 GEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEM 748
G E V+ + R+ + G S G+ D+ K AK K++E K + +
Sbjct: 729 GNEETVKFLDRVKELGFLRSTLAGISIGVEDLQVPK----AKKKIIEEALKKTEEIWNQY 784
Query: 749 EKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSK-GSNI 807
+G + T +E + + S L +KA F E+ + ++G +
Sbjct: 785 VQGII------TNKERYNRI-IDVWSEATNLVSKAMFEEIEKSKR----IENGKEYPGTF 833
Query: 808 NISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFH 867
N M+A G + N ++ R L +HS + N F GL+ E+F
Sbjct: 834 NPIYMMAISGARG-NRDQIRQLAGMRGL--MAKHSGEFIETPIISN-FREGLSVLEYFIS 889
Query: 868 TMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL 901
T G R+GL DTA+KTA GYL RRLV +D+ +
Sbjct: 890 TYGARKGLADTALKTAFAGYLTRRLVDVAQDITI 923
>UniRef50_P47582 Cluster: DNA-directed RNA polymerase subunit beta';
n=8; Mycoplasma|Rep: DNA-directed RNA polymerase subunit
beta' - Mycoplasma genitalium
Length = 1292
Score = 116 bits (278), Expect = 5e-24
Identities = 93/290 (32%), Positives = 145/290 (50%), Gaps = 23/290 (7%)
Query: 243 NVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASA 302
N KL P+++IL +PV P IRP + D A D+ +++ ND + R L
Sbjct: 291 NSKL-HPKNMILHTVPVIPPDIRPIIQLD-GAKFTTSDINNFYRRVIIRNDRLRRILEDG 348
Query: 303 GKCELIQEDWDYLQLHA--ALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSG 360
++ + L + AL+ NS P + K+ + L RLKGKQG FR NL G
Sbjct: 349 TVPSIVVNNEKRLLQESVDALFDNSSRHK-PSLSKDKRSLKSLTDRLKGKQGLFRHNLLG 407
Query: 361 KRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGA 420
KRVD+S R+VI P L++ EVG+P + L P + + + NG ++ P A
Sbjct: 408 KRVDYSGRSVIVVGPELKMYEVGIPALMILKLFKPFIIHGL----INKFDENGNEIRPIA 463
Query: 421 NYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRA 480
++Q + +K N++ +L G V + ++ VL NR P+LH+L I
Sbjct: 464 ASIRQ----AEDMIK--NQD----DLIWGIVYD--VIKDRPVLLNRAPTLHRLGIQAFEP 511
Query: 481 KVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEA--RAEALILMGSH 528
++ + R + V T +NADFDGD+M +H+P +E A A A++L H
Sbjct: 512 RIVDGKAIRLHPLVTTAFNADFDGDQMAVHVPLSENAVNEARAVLLASKH 561
Score = 66.5 bits (155), Expect = 4e-09
Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
Query: 786 RELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIP 845
+E + N+ ++MA SG++G+ N +Q+ G + L K N + + ++P
Sbjct: 800 QEQYRDNSIVVMADSGARGNISNFTQLF---GMRGLMSKSF-NYERNNQSKIIKDTIEVP 855
Query: 846 AARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYD 904
+++SF+ GLT E+F + G R+G+ DTA+KTA++GY+ R+LV + +L++ +D
Sbjct: 856 -----IKHSFFEGLTINEYFNSSYGARKGMTDTAMKTAKSGYMTRKLVDATHELIINHD 909
Score = 64.1 bits (149), Expect = 2e-08
Identities = 29/49 (59%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVAS-MNITQGVPRVKEI 1084
++E GTAVG +AAQSIGEPGTQ+T++TFH GV++ N+ QG R+K+I
Sbjct: 1007 LVELGTAVGVIAAQSIGEPGTQLTMRTFHTGGVSTENNLAQGFERLKQI 1055
>UniRef50_Q20EX2 Cluster: DNA-directed RNA polymerase; n=1;
Oltmannsiellopsis viridis|Rep: DNA-directed RNA
polymerase - Oltmannsiellopsis viridis (Marine
flagellate)
Length = 1021
Score = 115 bits (277), Expect = 7e-24
Identities = 102/337 (30%), Positives = 160/337 (47%), Gaps = 46/337 (13%)
Query: 248 RPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVI---ARHLASAGK 304
RP+ ++L+ LPV P +RP + + DL +++ N + AR +
Sbjct: 573 RPQWMVLSVLPVLPPDLRPIIQMNGNQ-VAVSDLNKLYQKVIFRNQRMLRFARGQYTINN 631
Query: 305 CELIQEDWDYLQLHA-ALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRV 363
++ LQ AL N + G ++ +P + L LKGK+GRFR NL GKRV
Sbjct: 632 SPEMRYAGRLLQEAVDALIANGKGGGATISDANNRPLKSLSDMLKGKKGRFRQNLLGKRV 691
Query: 364 DFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV 423
D+S R+VI P L++ E G+P +A L P + R+L N +
Sbjct: 692 DYSGRSVIVVGPKLKLHECGLPKEMAIELFQPFLI--------RQL---------RTNKI 734
Query: 424 QQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQ 483
+ KK ++ G+ + I + LK V++ H +L NR P+LH+L I + K+
Sbjct: 735 AATIVGAKKLIRSGD-QIIWEVLK--QVLQNH-----PILLNRAPTLHRLGIQAFQPKLV 786
Query: 484 PQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQN 543
R + VC +NADFDGD+M +H+P + EAR+EA L+ + N
Sbjct: 787 DGRAILLHPLVCPAFNADFDGDQMAVHVPLSYEARSEAWKLIWARN-------------- 832
Query: 544 KSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKS 580
N+++P GE ++ +QD I G Y +T D KS
Sbjct: 833 --NILSPATGEPILTPSQDMILGCYYLTTTDRIRFKS 867
>UniRef50_Q32RG1 Cluster: DNA-directed RNA polymerase subunit beta';
n=1; Zygnema circumcarinatum|Rep: DNA-directed RNA
polymerase subunit beta' - Zygnema circumcarinatum
(Green alga)
Length = 715
Score = 115 bits (276), Expect = 9e-24
Identities = 98/328 (29%), Positives = 155/328 (47%), Gaps = 49/328 (14%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTN-EDDLTMKQSEILLINDVIARHLASAGKC 305
++PE ++L LPV P +RP + ++K G DL +L N +I + C
Sbjct: 293 TQPEWMVLRTLPVLPPDLRP--ILELKDGQLIRSDLNELYRRVLYRNQLICQFSVEDPFC 350
Query: 306 ELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDF 365
+ + Q +L N I + + +P + L +KGK+GRFR NL GKRVD+
Sbjct: 351 ISMMQKKLLQQAIDSLLANGAGGNI-IRDRNMRPYKSLSDIIKGKKGRFRENLLGKRVDY 409
Query: 366 SSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGA--NYV 423
S R+VI P L + + G+P +A L P + R L+ N +P A + +
Sbjct: 410 SGRSVIVVGPYLSLYQCGLPREMAIELFQPFVI--------RGLIINHFARNPRAAKSMI 461
Query: 424 QQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQ 483
Q+R K LK +VD +V+ NR P+LH+L + + +
Sbjct: 462 QRRHPIVWKILKM-------------------IVDDHLVILNRAPTLHRLGVQAFQPVLV 502
Query: 484 PQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQN 543
+R + VCT +NADFDGD+M +H+P + EA+AEA +LM +
Sbjct: 503 RERAIHLHPLVCTGFNADFDGDQMAVHVPLSLEAQAEAHLLMSPY--------------- 547
Query: 544 KSNLVTPRNGELLIAATQDFITGGYLIT 571
NL++P G+ ++ TQD + G Y +T
Sbjct: 548 -FNLLSPGTGDAIVVPTQDMLLGLYALT 574
>UniRef50_Q7VJ82 Cluster: Bifunctional DNA-directed RNA polymerase
subunit beta-beta' (EC 2.7.7.6) [Includes: DNA-directed
RNA polymerase subunit beta (Transcriptase subunit beta)
(RNA polymerase subunit beta); DNA- directed RNA
polymerase subunit beta' (Transcriptase subunit beta')
(RNA polymerase beta')]; n=246; cellular organisms|Rep:
Bifunctional DNA-directed RNA polymerase subunit
beta-beta' (EC 2.7.7.6) [Includes: DNA-directed RNA
polymerase subunit beta (Transcriptase subunit beta) (RNA
polymerase subunit beta); DNA- directed RNA polymerase
subunit beta' (Transcriptase subunit beta') (RNA
polymerase beta')] - Helicobacter hepaticus
Length = 2894
Score = 115 bits (276), Expect = 9e-24
Identities = 98/327 (29%), Positives = 159/327 (48%), Gaps = 46/327 (14%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
+RPE ++LT LPV P +RP V D D+ ++ N + R +
Sbjct: 1621 NRPEWMMLTILPVLPPDLRPLVALD-GGKFAVSDVNDLYRRVINRNQRLKRLIELDSPEI 1679
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ ++ + + K+P + L + +KGKQGRFR NL GKRVDFS
Sbjct: 1680 IVRNEKRMLQEAVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS 1739
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI PNL++ + G+P ++A L P H A ++++
Sbjct: 1740 GRSVIVVGPNLKMNQCGLPKNMALELFKP---------------------HLFAK-LEEK 1777
Query: 427 GLKT--KKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP 484
G T K+ +K N +K + +C + +V+G VL NR P+LHK SI K+
Sbjct: 1778 GYATTLKQAVKMVN-QKTNEVWEC----LQEIVNGYPVLLNRAPTLHKQSIQAFHPKLID 1832
Query: 485 QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNK 544
+ + + VC+ +NADFDGD+M +H+P ++EA AE ILM S
Sbjct: 1833 GKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAIAECKILMLS----------------S 1876
Query: 545 SNLVTPRNGELLIAATQDFITGGYLIT 571
N++ P +G+ + +QD + G Y ++
Sbjct: 1877 MNILLPASGKAVAVPSQDMVLGLYYLS 1903
Score = 58.4 bits (135), Expect = 1e-06
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVAS 1071
+++PG AVG LAAQSIGEPGTQ+TL+TFH G AS
Sbjct: 2273 MVKPGEAVGVLAAQSIGEPGTQLTLRTFHVGGTAS 2307
Score = 54.4 bits (125), Expect = 2e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 851 VENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNA 910
+ ++F GL E+F T G R+GL DTA+KTA GYL R+L+ +++ + + +
Sbjct: 2124 ITSNFKEGLNVLEYFNSTHGARKGLADTALKTANAGYLTRKLIDVSQNMKVTIEDCGTHE 2183
Query: 911 TGEVVQFRYGSDGLDP 926
E+ GSD ++P
Sbjct: 2184 GVEITDITVGSDMIEP 2199
>UniRef50_Q1L5X9 Cluster: DNA-directed RNA polymerase; n=1;
Marchantia polymorpha|Rep: DNA-directed RNA polymerase -
Marchantia polymorpha (Liverwort)
Length = 1008
Score = 113 bits (271), Expect = 4e-23
Identities = 119/440 (27%), Positives = 184/440 (41%), Gaps = 48/440 (10%)
Query: 497 PYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELL 556
PYNADFDGD +++ +PQTEE+RAE LM + I S ++N +
Sbjct: 1 PYNADFDGDCLHVFVPQTEESRAELHQLM-----TIPAQILPSPDEN-----------TI 44
Query: 557 IAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRK---LW 613
+ +QD++ YL+T F K QLA + +P P I+K K LW
Sbjct: 45 LGLSQDYVLATYLVTSSPLFLPKDSMHQLA--------MWTKKQLPVPTIVKSPKLGPLW 96
Query: 614 TGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLG 673
TGKQ+ L + P N T + + G C + S + LV K+T
Sbjct: 97 TGKQVIDLAI-PEGFSFQSNNGAT--RIHDGEILSCGEKSNWLASTKGLVRIIAQKNTDA 153
Query: 674 SGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKK---LIEAK 730
+ +LR+W A M R + I D + +
Sbjct: 154 AVEHIDCSQAVLREWLLSQGFSVSLEDFYAAPDQDMRRKLKYKIEDNLEHAQCMFVCRGD 213
Query: 731 NKLLE-SGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELH 789
K+L + S IL+ + + + +E+ +S + + +
Sbjct: 214 KKILNINTSSNASMSILDSAAPSERRRRRHGLED----AAISSFRQTQSQIGETFIESIS 269
Query: 790 PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERH-------- 841
+N L M +SGSKGSN+ + Q I +G Q + G+ + + ++ L
Sbjct: 270 DSNCLLTMVRSGSKGSNLKVMQQIGSLGFQVIKGEELLSTHKNPKLVRLAASMGYSMEND 329
Query: 842 -SKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLV 900
I RG V++S GL P EFF H + R+GL ++ AE G L +RL+ L D+
Sbjct: 330 LQDIWEIRGLVKSSLLDGLEPHEFFVHAISVRDGLFRQSLDIAEPGELFKRLMLFLRDIH 389
Query: 901 LQYDMTVRNATG-EVVQFRY 919
+ YD TVRN G E++QF Y
Sbjct: 390 IAYDGTVRNMGGLEIIQFEY 409
>UniRef50_Q6YQW2 Cluster: DNA-directed RNA polymerase subunit beta';
n=4; Firmicutes|Rep: DNA-directed RNA polymerase subunit
beta' - Onion yellows phytoplasma
Length = 1353
Score = 113 bits (271), Expect = 4e-23
Identities = 106/348 (30%), Positives = 172/348 (49%), Gaps = 52/348 (14%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIK--AGTNEDDLTMKQSEILLINDVIARHLASAGK 304
++PE +++ +PV P +RP V D A T +DL + IL N+ + + +
Sbjct: 349 NKPEWMVMDVIPVLPPGLRPMVPLDGGRFATTEVNDLYRR---ILNRNNRLKKQMLQKAP 405
Query: 305 CELIQEDWDYLQLHA-ALYINSEMSGIPLA-MQPKKPGRGLVQRLKGKQGRFRGNLSGKR 362
+I+ + LQ AL+ N++ S + ++ +P + L + L+GKQGRFR NL GKR
Sbjct: 406 RLIIKNEKRMLQEAVDALFDNAKTSKKNVNNVEKNRPLKSLSEMLRGKQGRFRQNLLGKR 465
Query: 363 VDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANY 422
VD+S R+VI P+L++ + GVP +A IL P LQ + G D AN
Sbjct: 466 VDYSGRSVIIVGPDLEMHQCGVPREMAIILFKP--FILKKLQETK-----GID-KKNANT 517
Query: 423 VQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV 482
+ ++ E++ L+ +VV+ H VL NR P+LH+L I K+
Sbjct: 518 IYEK-----------MNEEVWNALE--EVVKEH-----PVLLNRAPTLHRLGIQAFDPKL 559
Query: 483 QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQ 542
+ R + V +NADFDGD+M +++P + EA+AEA +LM N
Sbjct: 560 IDGKAIRLHPLVTPAFNADFDGDQMAIYVPLSLEAQAEARLLMLVSN------------- 606
Query: 543 NKSNLVTPRNGELLIAATQDFITGGYLIT---QRDTFFTKSEAQQLAA 587
N++ P+NG ++ +QD + G Y +T ++D +A Q A
Sbjct: 607 ---NILDPKNGNPVVTPSQDMVLGNYYLTIEEKKDRTINSYDAAQRTA 651
Score = 69.3 bits (162), Expect = 6e-10
Identities = 31/54 (57%), Positives = 43/54 (79%), Gaps = 1/54 (1%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVAS-MNITQGVPRVKEIINASR 1089
++E G AVG +AAQSIGEPGTQ+T++TFH GVAS +ITQG+PR++E+ +
Sbjct: 1059 LVEIGEAVGVIAAQSIGEPGTQLTMRTFHTGGVASASDITQGLPRIEELFEVRK 1112
Score = 64.9 bits (151), Expect = 1e-08
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 24/168 (14%)
Query: 738 YSKCDGYILEMEKGTLQCQP----GCTMEETLEAVMLSELSSIRELAAKACFRELHPTNA 793
YS + E+E +Q + G + ++++E +IR+ + +E N
Sbjct: 813 YSNKQELLQEVEARNIQIETWYNDGFLTDAERRRLVINEWKNIRDEIQEGLMKEFQQDNH 872
Query: 794 PLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVEN 853
+M++SG++GS N +Q+ G + L P G E +P V+
Sbjct: 873 IFMMSESGARGSVSNFTQL---AGMRGLMNN--PKG-EIIEVP--------------VKA 912
Query: 854 SFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL 901
SF GL +EFF T G R+G DTA+KTAE+GYL RRLV +D+V+
Sbjct: 913 SFREGLKVSEFFISTHGARKGSTDTALKTAESGYLTRRLVDVTQDIVV 960
>UniRef50_Q9RVW0 Cluster: DNA-directed RNA polymerase subunit beta';
n=9; Deinococci|Rep: DNA-directed RNA polymerase subunit
beta' - Deinococcus radiodurans
Length = 1546
Score = 113 bits (271), Expect = 4e-23
Identities = 103/360 (28%), Positives = 168/360 (46%), Gaps = 44/360 (12%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
+ P +IL +PV P +RP V D DL ++ N+ + + ++
Sbjct: 524 NNPSWMILGTVPVMPPDLRPMVQVD-GGRFATSDLNDLYRRLINRNNRLKKLMSQGAPDM 582
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPG-RGLVQRLKGKQGRFRGNLSGKRVDF 365
+I+ + LQ I++ G P+ R L L GKQGRFR NL GKRVD+
Sbjct: 583 IIRNEKRMLQEAVDALIDNGRRGSPVTNPGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDY 642
Query: 366 SSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQ 425
S R+VI P L++ + GVP +A L P +L +++ +V N Q
Sbjct: 643 SGRSVIVVGPQLKLHQCGVPKRMALELFKP---------FLFKVLEEKGEV---TNIKQA 690
Query: 426 RGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQ 485
R + ++Y R+ + L+ +++ VVL NR P+LH+L I +
Sbjct: 691 RKM-LERYRD--TRDSVWDALE-------EVIEDKVVLLNRAPTLHRLGIQAFEPVLVEG 740
Query: 486 RTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALI-LMGSHNTAVTVIIRVSLEQNK 544
++ + + VC +NADFDGD+M +H+P + +A+AEA I ++ SH
Sbjct: 741 QSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQMLASH---------------- 784
Query: 545 SNLVTPRNGELLIAATQDFITGGYLITQ--RDTFFTKSEAQQLAACLLAGPDATMRIDMP 602
NL++P NGE + ++D I G + +TQ RD +E A L A + + ++ P
Sbjct: 785 -NLLSPANGEPNVKPSRDIILGIFTLTQLRRDNLGAGTEYASEADALAAFDEGKLSLNSP 843
Score = 62.1 bits (144), Expect = 9e-08
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 1038 IEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVA-SMNITQGVPRVKEIINASRNISTPII 1096
+ G AVG +AA+SIGEPGTQ+T++TFH G+A +IT G+PRV E+ A R T +
Sbjct: 1232 VSMGEAVGVVAAESIGEPGTQLTMRTFHTGGIAGGGDITMGLPRVIELFEA-RKPKTQAV 1290
Query: 1097 TAE 1099
A+
Sbjct: 1291 VAD 1293
>UniRef50_P49467 Cluster: DNA-directed RNA polymerase subunit beta';
n=3; Bacillariophyta|Rep: DNA-directed RNA polymerase
subunit beta' - Odontella sinensis (Marine centric
diatom)
Length = 843
Score = 111 bits (268), Expect = 8e-23
Identities = 96/326 (29%), Positives = 149/326 (45%), Gaps = 44/326 (13%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGT-NEDDLTMKQSEILLINDVIARHLASAGKC 305
S P +ILT LPV P +RP + ++ G DL I+ N+ + R L
Sbjct: 458 SNPAWMILTILPVIPPALRPMI--QLEGGRFATSDLNELYRRIITRNNRLLRLLEIDAPQ 515
Query: 306 ELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDF 365
+I+ + LQ I++ G +P + L +KGK GRFR NL GKRVD+
Sbjct: 516 LIIRNEKRMLQEAVDTLIDNGKRGKIALSANNRPLKSLSDIIKGKHGRFRQNLLGKRVDY 575
Query: 366 SSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQ 425
S R+VI P+L++ E G+P +A L P +L R + N
Sbjct: 576 SGRSVIVVGPSLRLNECGLPYEMALELFQP---------FLIREMIN------------- 613
Query: 426 RGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQ 485
+GL + + R I Q D V ++ + NR P+LH+L I +
Sbjct: 614 QGLASNMKIA---RNLIEQNEAIIDPVLEKVLSNHPIFLNRAPTLHRLGIQAFEPILVQG 670
Query: 486 RTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKS 545
R + + VC+ +NADFDGD+M +H+P + E+++E +LM +
Sbjct: 671 RAIKLHPLVCSAFNADFDGDQMAVHIPLSLESQSECYMLMLA----------------PY 714
Query: 546 NLVTPRNGELLIAATQDFITGGYLIT 571
N ++P NGE +I +QD + G Y +T
Sbjct: 715 NFLSPANGEPIILPSQDMVLGCYYLT 740
>UniRef50_Q06J18 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 760
Score = 111 bits (267), Expect = 1e-22
Identities = 89/285 (31%), Positives = 142/285 (49%), Gaps = 33/285 (11%)
Query: 248 RPEDLILTRLPVPPLCIRPSVVSDIKAGTNE---DDLTMKQSEILLINDVIARHLASAGK 304
+P+ +IL+ LPV P +RP V + G+N+ DL I+L N + + ++
Sbjct: 368 QPKWMILSSLPVLPPDLRPIV----ELGSNKIAVSDLNKSYQTIILRNLRLKKFYNNSAF 423
Query: 305 CELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVD 364
E +E Y + ++ + + L LKGK+GRFR NL GKRVD
Sbjct: 424 NEFTEEI-RYTKRLLQESVDELIQQDKSKKNNNISSKSLSDILKGKRGRFRQNLLGKRVD 482
Query: 365 FSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQ 424
+S R+VI DP L++ E G+P+ +A L YP + Q+L + N PGA ++
Sbjct: 483 YSGRSVIIVDPELKLHECGIPLKMAIELFYPFII-----QYL--ISFNLTKTIPGAKHI- 534
Query: 425 QRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP 484
+ TK +++ +++ +VL NR P+LHKL I + K+
Sbjct: 535 ---IHTKASF-------------LNEIIH-FVLNNYLVLLNRAPTLHKLGIQAFKPKLVT 577
Query: 485 QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHN 529
+ + + VC +NADFDGD+M MH+P + E+RAE+ L+ S N
Sbjct: 578 GKAIKLHPLVCPAFNADFDGDQMGMHIPLSFESRAESWKLLWSRN 622
>UniRef50_Q4A5S8 Cluster: DNA-directed RNA polymerase subunit beta';
n=2; Mycoplasma|Rep: DNA-directed RNA polymerase subunit
beta' - Mycoplasma synoviae (strain 53)
Length = 1492
Score = 111 bits (266), Expect = 1e-22
Identities = 96/327 (29%), Positives = 156/327 (47%), Gaps = 46/327 (14%)
Query: 248 RPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCEL 307
+PE+L++ LPV P +RP V D + D+ I++ N+ + + S +
Sbjct: 306 KPENLLIYNLPVIPADLRPLVQLD-GGRHSTSDINELYRRIIIRNNRLEKWYESDAPVLI 364
Query: 308 IQEDWDYLQLHA-ALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
Q ++ LQ AL NS P+ + P + + L GK+GRFR NL GKRVD+S
Sbjct: 365 KQNEFRMLQEAVDALIDNSRKKPGPVTSKDGHPFKSISDALVGKKGRFRQNLLGKRVDYS 424
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI P+L++ +VG+P +A L P W+ + ++
Sbjct: 425 GRSVIVVGPHLKMYQVGIPRDMAAKLFEP---------WIINRIMK-----------EEE 464
Query: 427 GLKTKKYLKYGNREKIAQELK--CGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP 484
G+ + K K K+ L VE+ +++ VL NR P+LH+LSI + +
Sbjct: 465 GINSVKAAK-----KLVDSLNPIIWPYVEQ-VLENRPVLLNRAPTLHRLSIQAFQPVLIR 518
Query: 485 QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNK 544
+ + + V T +NADFDGD+M +H+P ++ A EA LM +
Sbjct: 519 GKAIKIHPLVTTAFNADFDGDQMAVHVPISKAAVREAQELMLA----------------S 562
Query: 545 SNLVTPRNGELLIAATQDFITGGYLIT 571
N++ P++GE +I +QD I G Y +T
Sbjct: 563 KNILGPKDGEPIINPSQDIILGLYYLT 589
Score = 60.5 bits (140), Expect = 3e-07
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 22/178 (12%)
Query: 725 KLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKAC 784
K E + + L+ + K GY+ + E+ TL + ++E++E + + S +
Sbjct: 873 KKAEEETEALKDYFKK--GYLTDDERYTLTIKKWSDVKESIEKELKKVVDSNLD------ 924
Query: 785 FRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKI 844
N +M SG++G+ N +Q+ G N K + E+ + +I
Sbjct: 925 -------NPLFMMLSSGARGTYSNFTQLAGMRGLMNNNTKILKADAENDRV--VRSIVEI 975
Query: 845 PAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
P V++SF GLT EF+ T G R+GL DTA+ TA++GYL RRLV+ + +V++
Sbjct: 976 P-----VKSSFLDGLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVEVAQGVVIR 1028
Score = 59.7 bits (138), Expect = 5e-07
Identities = 29/52 (55%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVA-SMNITQGVPRVKEIINA 1087
++ G AVG +AAQSIGEPGTQ+T++TFH GVA +IT G R+ E+I+A
Sbjct: 1127 IVNIGEAVGVIAAQSIGEPGTQLTMRTFHTGGVAGGEDITGGFGRLIELIDA 1178
>UniRef50_Q06SJ9 Cluster: DNA-directed RNA polymerase; n=1;
Stigeoclonium helveticum|Rep: DNA-directed RNA polymerase
- Stigeoclonium helveticum (Green alga)
Length = 2113
Score = 110 bits (265), Expect = 2e-22
Identities = 97/337 (28%), Positives = 158/337 (46%), Gaps = 46/337 (13%)
Query: 244 VKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAG 303
+K SRPE ++L+ LPV P +RP + I DL ++L N+ + R L +
Sbjct: 1716 LKESRPEWMVLSLLPVLPPDLRP--ILQIGNQVASSDLNRLYQKVLYRNERLKRFLKDST 1773
Query: 304 KCELIQEDWDYLQLHAA---LYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSG 360
Q + Y L A L N + G P + L + LKGK+GRFR NL G
Sbjct: 1774 STNSPQMKFAYRLLQEAVDNLIDNGKGKGNAETDNRGLPLKSLTELLKGKKGRFRQNLLG 1833
Query: 361 KRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGA 420
KRVD+S R+VI P L++ E G+P +A L P + +++ +G A
Sbjct: 1834 KRVDYSGRSVIVVGPRLRLHECGLPKEMAIELFMPFLI--------QKIFQSGK-----A 1880
Query: 421 NYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRA 480
+ + L KK L+ + + + + L + V+L NR P+LH+ +
Sbjct: 1881 STI----LGAKKILQNDSN-------RTWEFLNMVLRENPVLL-NRAPTLHRFGFQAFQP 1928
Query: 481 KVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSL 540
++ + + VC +NADFDGD+M +H+P T EA+ EA +M + N
Sbjct: 1929 RLVEGKAILLHPLVCPAFNADFDGDQMAVHVPITVEAKVEAWKIMLARN----------- 1977
Query: 541 EQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFF 577
+L++ GE+++ +QD + G Y +T ++ F
Sbjct: 1978 -----HLLSAATGEVILVPSQDMVLGSYYLTAKNPKF 2009
>UniRef50_Q9AIH0 Cluster: DNA-directed RNA polymerase; n=17;
Candidatus Carsonella ruddii|Rep: DNA-directed RNA
polymerase - Carsonella ruddii
Length = 1292
Score = 109 bits (263), Expect = 3e-22
Identities = 93/327 (28%), Positives = 155/327 (47%), Gaps = 46/327 (14%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASA--GK 304
++P ++L + PV P +RP + K + D + +I+L + + + + K
Sbjct: 206 NKPSWMVLKKTPVLPPRMRPLIALSEKKFASSD--INELYKIVLERNYKLKKMTTYLDPK 263
Query: 305 CELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVD 364
LI E + AL+ N ++ P+ K+ + +KGK GRFR NL GKRVD
Sbjct: 264 QLLINERISLQESIYALFDNEKLIN-PILTSSKRVLKSFSSLIKGKYGRFRQNLLGKRVD 322
Query: 365 FSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQ 424
FS R+VI+ +PNL + E +P+++A L P + + + + D +
Sbjct: 323 FSGRSVITVEPNLFLYECKIPIYIALELFKPILYYELKKKKIITTISFIDDYY------- 375
Query: 425 QRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP 484
KK N+++I LK + V+ + + + NR P+LH+++ + +
Sbjct: 376 ------KK-----NKKQIILLLK--NKVKSYFI-----MLNRAPTLHRMNFQSFKILLTE 417
Query: 485 QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNK 544
+T + + VC YNADFDGD+M +HLP T A+ E+ L+ S N
Sbjct: 418 DKTIKIHPLVCLSYNADFDGDQMAIHLPLTNNAKVESNYLLLSIN--------------- 462
Query: 545 SNLVTPRNGELLIAATQDFITGGYLIT 571
N+++P NG +I TQD I G Y T
Sbjct: 463 -NIISPSNGNAIIIPTQDIIMGIYYFT 488
Score = 54.4 bits (125), Expect = 2e-05
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 788 LHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAA 847
L TN IM SGS+GS + I Q+IA G F S
Sbjct: 648 LKKTNNLFIMLDSGSRGSMLQIKQLIAFRG--------------------FFSKSNGDII 687
Query: 848 RGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTV 907
+ + ++ GL +F T G R+GL DT++KTA +GYL R+L+ DLV+ Y +
Sbjct: 688 KDPIFDNLKNGLNMKNYFISTFGARKGLTDTSLKTANSGYLTRKLIDVSHDLVI-YKIDC 746
Query: 908 RNATG 912
+ TG
Sbjct: 747 KTKTG 751
Score = 50.8 bits (116), Expect = 2e-04
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 1041 GTAVGALAAQSIGEPGTQMTLKTFHFAGVAS 1071
G +VG ++AQSIGEPGTQ+T++TFH GVAS
Sbjct: 840 GVSVGIISAQSIGEPGTQLTMRTFHTGGVAS 870
>UniRef50_Q3ZX00 Cluster: DNA-directed RNA polymerase subunit beta';
n=3; Dehalococcoides|Rep: DNA-directed RNA polymerase
subunit beta' - Dehalococcoides sp. (strain CBDB1)
Length = 1295
Score = 108 bits (260), Expect = 8e-22
Identities = 99/326 (30%), Positives = 161/326 (49%), Gaps = 44/326 (13%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
++PE +I+T LPV P +RP V D DL ++ N+ + +HL G E
Sbjct: 288 NKPEWMIMTVLPVLPPDLRPMVQLD-GGRFATSDLNDLYRRVINRNNRL-QHLMEIGAPE 345
Query: 307 LI-QEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDF 365
+I + + LQ I++ G +A+ + L L+GKQGRFR NL GKRVD+
Sbjct: 346 IIIRNEKRMLQEAVDSLIDNGRRGKSVAVNGDHKAKSLSDLLRGKQGRFRQNLLGKRVDY 405
Query: 366 SSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQ 425
S R+VI P+L++ + G+P +A L P F + RLV +G + P
Sbjct: 406 SGRSVIVVGPSLKLSQCGLPRRMALELFKP---FV-----MHRLVRDG--LAP------- 448
Query: 426 RGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQ 485
+K+ + L R ++ D++E + D V+L NR P+LH+LSI +
Sbjct: 449 -NIKSARRLVERARPEVY------DILEEVVKDRPVLL-NRAPTLHRLSIQAFEPVLIDG 500
Query: 486 RTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKS 545
R + VC+ +NADFDGD+M +H+P ++ A EA T +++
Sbjct: 501 SALRLHPLVCSAFNADFDGDQMAVHVPLSKAAVKEA------RETMLSI----------H 544
Query: 546 NLVTPRNGELLIAATQDFITGGYLIT 571
N++ P +GE +++ + D + G Y +T
Sbjct: 545 NMMLPSSGEPVVSPSLDMVFGCYYLT 570
Score = 70.1 bits (164), Expect = 3e-10
Identities = 30/51 (58%), Positives = 41/51 (80%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINA 1087
+++ TAVG +AAQSIGEPGTQ+TL+TFH GV ++IT G+PRV+E+ A
Sbjct: 934 LVDMNTAVGIIAAQSIGEPGTQLTLRTFHTGGVVGVDITTGLPRVEELFEA 984
Score = 56.8 bits (131), Expect = 3e-06
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 851 VENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLED-LVLQYDMTVRN 909
+++S GLT E+F T G R+GL DTA++T+ +GYL RRL+ +D ++LQ D N
Sbjct: 786 IKSSLREGLTALEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDVIILQEDCGTAN 845
Query: 910 AT 911
T
Sbjct: 846 GT 847
>UniRef50_Q8G515 Cluster: DNA-directed RNA polymerase subunit beta';
n=68; Actinobacteridae|Rep: DNA-directed RNA polymerase
subunit beta' - Bifidobacterium longum
Length = 1345
Score = 108 bits (260), Expect = 8e-22
Identities = 96/325 (29%), Positives = 148/325 (45%), Gaps = 42/325 (12%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
++PE ++L +PV P +RP V D DL ++ N+ + R +
Sbjct: 308 NKPEAMVLDVIPVIPPDLRPMVQLD-GGRFATSDLNDLYRRVINRNNRLKRLIELGAPEI 366
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
++ + LQ ++ G P+ +P + L LKGKQGRFR NL GKRVD+S
Sbjct: 367 MLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLGKRVDYS 426
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI P+L++ + G+P +A L P F ++RLV NY Q
Sbjct: 427 GRSVIVVGPSLRMHQCGLPKPMALELFKP---FV-----IKRLV--------DLNYAQ-- 468
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
+K+ K L ++ L+ +V+ H VL NR P+LH+L I + +
Sbjct: 469 NMKSAKRLVDRGDAEVWGVLE--EVISEH-----PVLLNRAPTLHRLGIQAFEPILVEGK 521
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
C +NADFDGD+M +HLP + EA+AEA LM N
Sbjct: 522 AIHLPPLACAAFNADFDGDQMAVHLPLSAEAQAEARSLM----------------MASDN 565
Query: 547 LVTPRNGELLIAATQDFITGGYLIT 571
++ P +G + +QD I G Y ++
Sbjct: 566 ILKPADGHTVTMPSQDMILGLYYLS 590
Score = 91.1 bits (216), Expect = 2e-16
Identities = 93/345 (26%), Positives = 153/345 (44%), Gaps = 53/345 (15%)
Query: 744 YILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSK 803
Y + +K + G EE ++ + +K + PT+ I+ QSG++
Sbjct: 753 YEAKADKVNANYEMGLLTEEARRQELIDLWTECTAEVSKEVEEKFDPTSNLAIIVQSGAR 812
Query: 804 GSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTE 863
G+ + I+Q+ G + L P G IP V++++ GL+ E
Sbjct: 813 GNMMQINQI---AGMRGLVAN--PKG------------EIIPRP---VKSNYRDGLSVLE 852
Query: 864 FFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDG 923
+F G R+GL DTA++TAE+GYL RRLV +D++++ + A + +DG
Sbjct: 853 YFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKAGLPIRVAERDNDG 912
Query: 924 LDPTYMEGKDRPVDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFK 983
+ ++ D + ADV +P DG ++ ++ L++D
Sbjct: 913 -NLVLVKAADGGPYSRLLAADV--------IDPADGQTVLYKRDDALSMDVLNDLVAHGV 963
Query: 984 NELLSFLKATAGRVRALRARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTA 1043
E+ T R + A+ G A +L ++ G
Sbjct: 964 EEVKCRSVLTCESKRGVCAKCYGWSLATNKL-----------------------VDVGET 1000
Query: 1044 VGALAAQSIGEPGTQMTLKTFHFAGV-ASMNITQGVPRVKEIINA 1087
VG +AAQSIGEPGTQ+TL++FH GV A+ +ITQG+PRV E+ A
Sbjct: 1001 VGIVAAQSIGEPGTQLTLRSFHSGGVAAASDITQGLPRVTELFEA 1045
>UniRef50_A3ZLH7 Cluster: DNA-directed RNA polymerase; n=2;
Planctomycetaceae|Rep: DNA-directed RNA polymerase -
Blastopirellula marina DSM 3645
Length = 1478
Score = 108 bits (259), Expect = 1e-21
Identities = 93/325 (28%), Positives = 152/325 (46%), Gaps = 42/325 (12%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
++PE ++L +PV P +RP V+ D DL I+ N+ + + +
Sbjct: 230 NKPEWMVLDVIPVIPPDLRPLVLLD-SGNFATSDLNDLYRRIINRNNRLRKLVDLNAPEV 288
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+I+ + LQ ++ P+ +P + L +KGKQGRFR NL GKRVD+S
Sbjct: 289 IIRNEKRMLQQSVDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYS 348
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
+R+VI P +++ + G+P +A L P + R+L G H A+ ++
Sbjct: 349 ARSVIVVGPRMKLHQCGLPKKIALELYQPFII--------RKLKVLG---H--ADTIK-- 393
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
KK L+ + E D++E ++ V+ NR P+LH++ I +
Sbjct: 394 --SAKKMLERKDEE-------VWDILE-SVIQNHPVMLNRAPTLHRMGIQAFEPILVEGN 443
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSN 546
+ VC +NADFDGD+M +HLP + EA+ EA LM S N N
Sbjct: 444 AIHLHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAHTLMLSTN----------------N 487
Query: 547 LVTPRNGELLIAATQDFITGGYLIT 571
+ P NG+ +++ +QD + G IT
Sbjct: 488 IFAPSNGKPIMSPSQDVVMGCNFIT 512
Score = 56.0 bits (129), Expect = 6e-06
Identities = 68/273 (24%), Positives = 113/273 (41%), Gaps = 33/273 (12%)
Query: 638 KGKNYTGNKDLCVQDSYVIIRNSELVCGSMD--KSTLGSGTKSSIFYILLRDWGEEYAVR 695
K + G ++ +Y I ++++ MD +LGS S + + G +
Sbjct: 557 KSEEEDGKHGSQIETTYGRILFNDMLPNGMDFYNHSLGSSELSKVISDCYQRLGRRATIE 616
Query: 696 GMWRLARMASYYMMNRGFSFGIID-VTPGKK---LIEAKNKLLESGYSKCDGYILEMEKG 751
+ + ++ G SF D VTP K + EA K ++ G I + E+
Sbjct: 617 LLDDMNQLGFRESTRSGLSFATDDLVTPDSKPKIIAEADKKAMKFKKQYDRGIITDKERK 676
Query: 752 TLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQ 811
E + A M+ + + L N +MA SG++G I Q
Sbjct: 677 NQVLDAWTHAREQITAEMMEAMKNDDRGG-------LGYINPVYLMADSGARGGTEQIRQ 729
Query: 812 MIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGG 871
+ G + L K P+G E P ++++F GLT E+F T G
Sbjct: 730 LS---GMRGLMAK--PSG-EIIETP--------------IKSNFREGLTVLEYFSSTHGA 769
Query: 872 REGLVDTAVKTAETGYLQRRLVKSLEDLVLQYD 904
R+GL DTA+KTA++GYL R+L +++V+ D
Sbjct: 770 RKGLADTALKTADSGYLTRKLADVAQNVVITMD 802
Score = 55.2 bits (127), Expect = 1e-05
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVA 1070
++E G AVG +AAQSIGEPGTQ+T++TFH GVA
Sbjct: 898 MVEEGMAVGIIAAQSIGEPGTQLTMRTFHIGGVA 931
>UniRef50_A3A1U6 Cluster: DNA-directed RNA polymerase; n=2; Oryza
sativa (japonica cultivar-group)|Rep: DNA-directed RNA
polymerase - Oryza sativa subsp. japonica (Rice)
Length = 1570
Score = 108 bits (259), Expect = 1e-21
Identities = 90/306 (29%), Positives = 140/306 (45%), Gaps = 14/306 (4%)
Query: 218 KEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPED-LILTRLPVPPLCIRPSVVSDIKAGT 276
+ + P EV N+ ++IP+E L + + P+D IL+ L VPP C+R S V D +
Sbjct: 187 RPLLPEEVQNIIKKIPEETRRWLSVRGYI--PQDGFILSYLCVPPNCLRVSNVLDGNTFS 244
Query: 277 NEDDLT-MKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQ 335
T + + + I + + S+ + + D LQ+ A YIN + G
Sbjct: 245 CSGTSTNLLRKALRKIQQIRGSRIGSSNI--QVDQVADDLQVDVANYIN--LGGTTKG-H 299
Query: 336 PKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYP 395
++ KQ + + K FSSR VI+ DP + + VGVP VAK ++
Sbjct: 300 GDDTFTSQPTAMQWKQ-KMKTLFISKSSSFSSRGVITGDPYIGLNVVGVPEEVAKRMSVE 358
Query: 396 ERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERH 455
E+V N+ L+ ++ G + Y + N K LK G++V R
Sbjct: 359 EKVTDHNIAQLQDMMNKGLCL----TYTDANSITYSLDAGKDNPNKKHTILKVGEIVNRR 414
Query: 456 LVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTE 515
+ DGD+V NR PS K S+ +V T + N +C P ADFDGD + + P++
Sbjct: 415 VFDGDIVFLNRPPSTDKHSVEAFYVQVHNDHTIKINPLICDPLGADFDGDCVQIFYPRSL 474
Query: 516 EARAEA 521
ARAEA
Sbjct: 475 SARAEA 480
Score = 50.4 bits (115), Expect = 3e-04
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 60 MGTNQKDANCETCGLG-LAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKV 115
+G + +C++CG + EC GHF +I+L +P+FH + + IL IC C K+
Sbjct: 60 LGLPLQVGSCQSCGSNAIEECEGHFRFIELPMPIFHPSHVTELSQILNLICLRCLKI 116
Score = 44.8 bits (101), Expect = 0.014
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 849 GFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVR 908
G V +S Y GL P E H++ RE ++ + E G L + ++ L D+ YD ++R
Sbjct: 717 GTVRSSIYHGLNPYEALLHSICEREKIMRASKGLVEPGSLFKNMMSRLRDVTACYDGSIR 776
Query: 909 NATGEVVQFRYGS 921
++G +V ++GS
Sbjct: 777 TSSGNLV-LQFGS 788
>UniRef50_Q9Z999 Cluster: DNA-directed RNA polymerase subunit beta';
n=47; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Chlamydia pneumoniae (Chlamydophila pneumoniae)
Length = 1393
Score = 108 bits (259), Expect = 1e-21
Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 26/279 (9%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
+ PE ++L +PV P +RP V D DL ++ N+ + L
Sbjct: 235 NHPEWMVLKNIPVVPPDLRPLVPLD-GGRFATSDLNDLYRRVINRNNRLKAILRLKTPEV 293
Query: 307 LIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
+++ + LQ ++ G P+ +P + L + LKGK GRFR NL GKRVD+S
Sbjct: 294 IVRNEKRMLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYS 353
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQR 426
R+VI P L+ + G+P +A L P + +RL G+ Y +
Sbjct: 354 GRSVIIVGPELKFNQCGLPKEMALELFEPFII--------KRLK------DQGSVYTIR- 398
Query: 427 GLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
KK ++ G E DV+E ++ G VL NR P+LH+L I + +
Sbjct: 399 --SAKKMIQRGAPE-------VWDVLEE-IIKGHPVLLNRAPTLHRLGIQAFEPVLIEGK 448
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILM 525
R + VC +NADFDGD+M +H+P + EA+ EA +LM
Sbjct: 449 AIRIHPLVCAAFNADFDGDQMAVHVPLSVEAQLEAKVLM 487
Score = 58.8 bits (136), Expect = 8e-07
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 10/121 (8%)
Query: 851 VENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL-QYDMTVRN 909
+ ++F GLT E+ + G R+GL DTA+KTA++GYL RRLV +D+++ + D N
Sbjct: 757 ITSNFREGLTVLEYSISSHGARKGLADTALKTADSGYLTRRLVDVAQDVIITEKDCGTLN 816
Query: 910 ATGEVVQFRYGSDGLDP--------TYMEGKDRPVDLARVLADVRAKCQDKNAEPLDGDG 961
E+ GS+ L P T E +P D +R+LA AE +D G
Sbjct: 817 HI-EISAIGQGSEELLPLKDRIYGRTVAEDVYQPGDKSRLLAQSGDVLNSVQAEAIDDAG 875
Query: 962 I 962
I
Sbjct: 876 I 876
Score = 53.6 bits (123), Expect = 3e-05
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNIT 1075
+I G AVG +AAQSIGEPGTQ+T++TFH G+A+ + T
Sbjct: 907 LIGMGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSST 945
>UniRef50_Q73JJ8 Cluster: DNA-directed RNA polymerase subunit beta';
n=10; Spirochaetales|Rep: DNA-directed RNA polymerase
subunit beta' - Treponema denticola
Length = 1424
Score = 107 bits (258), Expect = 1e-21
Identities = 98/327 (29%), Positives = 149/327 (45%), Gaps = 44/327 (13%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
++PE +IL +PV P +RP V D DL ++ N +++ +
Sbjct: 221 NKPEWMILDVIPVIPPDLRPMVQLD-GGRFATSDLNDLYRRVIHRNSRLSKLMELKAPDI 279
Query: 307 LIQEDWDYLQLHA-ALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDF 365
+I+ + LQ AL+ NS+ + +P + + LKGKQGRFR NL GKRVD+
Sbjct: 280 IIRNEKRMLQEAVDALFDNSKRKKA-IKGASNRPLKSISDLLKGKQGRFRQNLLGKRVDY 338
Query: 366 SSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQ 425
S R+VI P L++ + G+P +A L P F + +V N
Sbjct: 339 SGRSVIVVGPELKLWQCGLPTKMALELFKP---FIMKKLVQKEVVSN------------- 382
Query: 426 RGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQ 485
+K K L ++ L +VV H VL NR P+LH+L I +
Sbjct: 383 --IKKAKLLVEQEAAEVFAVL--DEVVSEH-----PVLLNRAPTLHRLGIQAFEPVLVEG 433
Query: 486 RTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKS 545
+ R + VC +NADFDGD+M +H+P T+ A+ E LM S
Sbjct: 434 KAIRLHPLVCKAFNADFDGDQMAIHVPLTQAAQMECWTLMLS----------------AR 477
Query: 546 NLVTPRNGELLIAATQDFITGGYLITQ 572
NL+ P NG+ ++ TQD + G Y +T+
Sbjct: 478 NLLDPANGKTIVFPTQDMVLGLYYLTK 504
Score = 54.8 bits (126), Expect = 1e-05
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 20/128 (15%)
Query: 774 SSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDR 833
S+++E+ K + N +M SG++GS I+Q+ G + L K P G +
Sbjct: 671 SNLKEILMKRLQEDKGGFNTIHMMETSGARGSKDQINQL---AGMRGLMSK--PTG-DII 724
Query: 834 SLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLV 893
LP + ++F GL EFF T G R+GL DTA+KT++ GYL RRLV
Sbjct: 725 ELP--------------IRSNFKEGLNVMEFFISTNGARKGLTDTALKTSDAGYLTRRLV 770
Query: 894 KSLEDLVL 901
+++V+
Sbjct: 771 DIAQNVVV 778
Score = 54.4 bits (125), Expect = 2e-05
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQ 1076
++ G AVG +AAQSIG+PGTQ+T++TFH G AS N+ +
Sbjct: 877 IVRIGEAVGIIAAQSIGQPGTQLTMRTFHEGGTASKNVEE 916
>UniRef50_O28390 Cluster: DNA-directed RNA polymerase subunit A'';
n=7; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit A'' - Archaeoglobus fulgidus
Length = 380
Score = 107 bits (258), Expect = 1e-21
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 1009 RAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAG 1068
+A L+ L T+ + + C Y ++EPG A G +AAQSIGEPGTQMT++TFH+AG
Sbjct: 24 KAELEKHGLKKTEAKKVVEKCFQAYLANLMEPGEAAGIVAAQSIGEPGTQMTMRTFHYAG 83
Query: 1069 VASMNITQGVPRVKEIINASRNISTPIITAELMQPY--DQEFARRVKGRICTSKLK 1122
VA +N+T G+PR+ EI++ +N STP++T L+ Y D+E AR V RI + +K
Sbjct: 84 VAEINVTLGLPRLIEILDVRKNPSTPMMTIRLLPEYAKDREKAREVANRIEATYVK 139
>UniRef50_A6BM51 Cluster: DNA-directed RNA polymerase; n=5;
Spermatophyta|Rep: DNA-directed RNA polymerase - Gnetum
parvifolium
Length = 747
Score = 107 bits (257), Expect = 2e-21
Identities = 99/329 (30%), Positives = 153/329 (46%), Gaps = 48/329 (14%)
Query: 249 PEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELI 308
PE ++L LPV P +RP V + E D ++ L N + G
Sbjct: 270 PEWMVLCLLPVLPPELRPIFVLGEQVVV-ESDFNKLYQKVNLRNKNLQNSFEIQGGPFYS 328
Query: 309 QEDWDYLQ---LHAAL--YINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKR 362
D+ LQ L A+ ++S SG P + +P + + GK+GRFR NL GKR
Sbjct: 329 TGDFLTLQKRLLQEAVDALLDSGKSGQPRKDHFRNRPYKSFSDVIAGKEGRFRANLLGKR 388
Query: 363 VDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANY 422
VD+S+R+VI P+L + + G+P +A L P + R L+ G +
Sbjct: 389 VDYSARSVIVVGPSLALHQCGLPRELAIKLFQPFLI--------RNLIGQGVVAN----- 435
Query: 423 VQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV 482
++ K L I + + + + ++ G VL NR P+LHK I+ + +
Sbjct: 436 -----IRAAKLL-------IQRRIPVVWKILQQILLGHPVLLNRAPTLHKFGILAFQPIL 483
Query: 483 QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQ 542
+R R + VCT +NADFDGD+M +HLP + EA E+ +LM SH
Sbjct: 484 VKERAIRLHPAVCTGFNADFDGDQMAVHLPLSIEAILESRLLMFSH-------------- 529
Query: 543 NKSNLVTPRNGELLIAATQDFITGGYLIT 571
+NL++P NG + TQD + G Y++T
Sbjct: 530 --TNLLSPSNGSPITKPTQDMLLGLYILT 556
>UniRef50_Q39KH4 Cluster: DNA-directed RNA polymerase subunit beta';
n=45; cellular organisms|Rep: DNA-directed RNA
polymerase subunit beta' - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 1414
Score = 107 bits (256), Expect = 2e-21
Identities = 95/325 (29%), Positives = 150/325 (46%), Gaps = 42/325 (12%)
Query: 248 RPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCEL 307
+PE +IL LPV P +RP V D DL ++ N+ + R L +
Sbjct: 233 KPEWMILEVLPVLPPELRPLVPLD-GGRFATSDLNDLYRRVINRNNRLKRLLELKAPEII 291
Query: 308 IQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSS 367
++ + LQ +++ G + K+P + L +KGK GRFR NL GKRVD+S
Sbjct: 292 VRNEKRMLQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSG 351
Query: 368 RTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRG 427
R+VI P L++ + G+P +A L P +F N ++ G
Sbjct: 352 RSVIVVGPTLKLHQCGLPKLMALELFKP-FIF---------------------NKLEVMG 389
Query: 428 LKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRT 487
+ T +K +E Q D++E + + V+L NR P+LH+L I + +
Sbjct: 390 VATT--IKAAKKEVENQTAVVWDILEEVIREHPVML-NRAPTLHRLGIQAFEPVLIEGKA 446
Query: 488 FRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNL 547
+ + VC +NADFDGD+M +H+P + EA+ EA LM + N N+
Sbjct: 447 IQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASN----------------NV 490
Query: 548 VTPRNGELLIAATQDFITGGYLITQ 572
+ P NG+ I +QD + G Y T+
Sbjct: 491 LFPANGDPSIVPSQDIVLGLYYATR 515
Score = 58.0 bits (134), Expect = 1e-06
Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 26/189 (13%)
Query: 720 VTPGKKLI--EAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSS-- 775
V P K+ I +A K+ E G + E+ E + M+ +LS+
Sbjct: 651 VPPQKETIVGDAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEP 710
Query: 776 IRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSL 835
+ + K +E N+ +MA SG++GS + I Q+ G + L K P+G S+
Sbjct: 711 VTDRDGKETRQESF--NSIYMMADSGARGSAVQIRQL---AGMRGLMAK--PDG----SI 759
Query: 836 PHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKS 895
+ P F E GL ++F T G R+GL DTA+KTA +GYL RRLV
Sbjct: 760 ------IETPITANFRE-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 808
Query: 896 LEDLVLQYD 904
+DLV+ D
Sbjct: 809 TQDLVVVED 817
Score = 53.2 bits (122), Expect = 4e-05
Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVAS 1071
++ G AVG +AAQSIGEPGTQ+T++TFH G AS
Sbjct: 913 LVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAS 947
>UniRef50_Q5D868 Cluster: DNA-directed RNA polymerase; n=1; Spinacia
oleracea|Rep: DNA-directed RNA polymerase - Spinacia
oleracea (Spinach)
Length = 1902
Score = 105 bits (253), Expect = 5e-21
Identities = 80/270 (29%), Positives = 129/270 (47%), Gaps = 11/270 (4%)
Query: 257 LPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQ 316
+PVPP C+ +SD + + D + ++L +VI + E + + + LQ
Sbjct: 3 VPVPPNCLSVPDISDGVSVMSSDLCSAMLKKVLRQIEVIRSSRSGEPNFESHEVEANDLQ 62
Query: 317 LHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQG--RFRGNLSGKRVDFSSRTVISPD 374
+ + Y+ +G + G K + R K FSSR+VI+ D
Sbjct: 63 VAVSQYLQVRGTGKAARAADNRYGVSKEGNNSSKAWVEKMRTLFISKGSGFSSRSVITGD 122
Query: 375 PNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYL 434
+ EVGVP +A+ +T+ ERV N+Q+L+ LV D + + + GL T L
Sbjct: 123 AYRAVNEVGVPCEIAQKMTFEERVNVHNIQYLQGLV----DKNLCLTF--RDGLSTYS-L 175
Query: 435 KYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECV 494
+ G++ L+ G +V R ++DGD+V NR P+ HK S+ R + + N +
Sbjct: 176 REGSKGHTF--LRLGQMVHRRIMDGDIVFINRPPTTHKHSLQALRVYIHDDHVVKINPLM 233
Query: 495 CTPYNADFDGDEMNMHLPQTEEARAEALIL 524
C P ADFDGD +++ PQ+ ARAE L L
Sbjct: 234 CGPLAADFDGDCVHLFYPQSLSARAEVLEL 263
Score = 61.3 bits (142), Expect = 2e-07
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 849 GFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVR 908
GFV F+ GL P E H++ RE +V ++ AE G L + L+ L D+V+ YD TVR
Sbjct: 543 GFVSRCFFHGLDPYEEIVHSIATREVIVRSSKGLAEPGTLFKNLMAVLRDVVICYDGTVR 602
Query: 909 N-ATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLA 943
N ++ V+QF YG G+ + PV + A
Sbjct: 603 NISSNSVIQFEYGVGGMQSQNLFPAGDPVGVLAATA 638
>UniRef50_Q2TUP4 Cluster: DNA-directed RNA polymerase; n=2; basal
Magnoliophyta|Rep: DNA-directed RNA polymerase -
Nymphaea lotus
Length = 544
Score = 105 bits (253), Expect = 5e-21
Identities = 47/77 (61%), Positives = 60/77 (77%)
Query: 849 GFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVR 908
GF+ + F TGL P E++FH M GR+GLVDTA+KT+ +GYLQR LVK+LE L + YD TVR
Sbjct: 362 GFISDRFLTGLHPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVCYDYTVR 421
Query: 909 NATGEVVQFRYGSDGLD 925
+A G +VQF YG DG+D
Sbjct: 422 DADGSIVQFYYGEDGVD 438
Score = 62.1 bits (144), Expect = 9e-08
Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 38/232 (16%)
Query: 507 MNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITG 566
MN+H PQ E ARAEA ++ ++ EQ + P GE + QD I
Sbjct: 1 MNVHFPQDEIARAEAYNIVNAN------------EQ----YIVPTKGEPIRGLIQDHIAS 44
Query: 567 GYLITQRDTFFTKSEAQQL--AACLLAGPDATMRI--------DMPP--PAIIKPRKLWT 614
L+T++DTF T+ E L +AC + + + D+ P PAI KP LWT
Sbjct: 45 SVLLTKKDTFLTREEYHHLLYSACAMVNLGESSKKCCMIKSEGDIHPILPAIWKPYPLWT 104
Query: 615 GKQIFSLIMRPNRRCEVKANLETKGK--NYTGNKDLCVQDSYVIIR-----NSELVCGSM 667
GKQI + I+ +E K +Y C +++ + R +E + G +
Sbjct: 105 GKQIITTILNHVAHGLPPFTVENVAKIHDYNIIPKSCQREANTLHRKCLICKNEFIYGVI 164
Query: 668 DKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIID 719
DK+ G K + +++ +GE A + L+R+ + + GF+ G+ D
Sbjct: 165 DKAQYG---KYGLVHMVQELYGENTAGLLLSILSRLFTAFFQMHGFTCGVDD 213
>UniRef50_Q8HUH0 Cluster: DNA-directed RNA polymerase subunit beta'
C-terminal section; n=1; Chlamydomonas reinhardtii|Rep:
DNA-directed RNA polymerase subunit beta' C-terminal
section - Chlamydomonas reinhardtii
Length = 489
Score = 105 bits (252), Expect = 7e-21
Identities = 83/241 (34%), Positives = 119/241 (49%), Gaps = 46/241 (19%)
Query: 336 PKKPGRGLVQR-----LKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAK 390
P+K RG + + LKGKQGRFR L GKRVD+S R+VI P L++ E G+P +A
Sbjct: 63 PEKDARGRLLKSLSDILKGKQGRFRQYLLGKRVDYSGRSVIVVGPRLRLHECGIPKEMAL 122
Query: 391 ILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGD 450
+L P +L + + N + L KK ++ N ++Q L
Sbjct: 123 VLYSP---------FLIKRILN--------EKLADTYLSAKKLIRT-NPLLVSQLL---- 160
Query: 451 VVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMH 510
R ++ VL NR P+LH+L + K+ + + VC +NADFDGD+M +H
Sbjct: 161 ---REIMKSCPVLLNRAPTLHRLGFQAFQPKLVDGKAILLHPLVCPAFNADFDGDQMAVH 217
Query: 511 LPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLI 570
+P T EARAEA LM + N NL++P GE LI +QD + G Y +
Sbjct: 218 VPITFEARAEAWKLMLARN----------------NLLSPATGEPLILPSQDMVLGCYYL 261
Query: 571 T 571
T
Sbjct: 262 T 262
>UniRef50_Q32RY3 Cluster: DNA-directed RNA polymerase subunit beta';
n=2; Streptophyta|Rep: DNA-directed RNA polymerase
subunit beta' - Staurastrum punctulatum (Green alga)
Length = 834
Score = 105 bits (251), Expect = 1e-20
Identities = 98/330 (29%), Positives = 154/330 (46%), Gaps = 48/330 (14%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTN-EDDLTMKQSEILLINDVIARHLASAGKC 305
++PE ++L+ LPV P +RP V +++ G DL ++L N+ ++ L+ G
Sbjct: 374 TQPEWMVLSVLPVLPPDLRPIV--ELREGQLITSDLNELYRKVLFRNEDLSIWLSYQGTL 431
Query: 306 EL----IQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGK 361
L + LQ + + M K+ + +KGK+GRFR NL GK
Sbjct: 432 VLSGLLARLQRASLQRAVDALLANGMGSSTFRDYNKRAYKSFSALIKGKKGRFRENLLGK 491
Query: 362 RVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGAN 421
RVD+S R+VI P L + E G+P +A L P F R+L P++ +
Sbjct: 492 RVDYSGRSVIVVGPLLALHECGLPREMALELFQP---FIIRELITRQLA---PNLRAAKS 545
Query: 422 YVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAK 481
+Q N+E I + V + +V +VL NR P+LH+L I +
Sbjct: 546 MIQ-------------NKEPIIWK------VLQVIVQNRLVLLNRAPTLHRLGIQAFQPV 586
Query: 482 VQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLE 541
+ +R + VC +NADFDGD+M +H+P + EA+ EA ILM S
Sbjct: 587 LVGERAILLHPLVCAGFNADFDGDQMAVHVPLSWEAQVEARILMWS-------------- 632
Query: 542 QNKSNLVTPRNGELLIAATQDFITGGYLIT 571
SNL++P G + +QD + G Y++T
Sbjct: 633 --PSNLLSPATGRAVAVPSQDMLLGLYVLT 660
>UniRef50_P29158 Cluster: DNA-directed RNA polymerase subunit A'';
n=1; Thermococcus celer|Rep: DNA-directed RNA polymerase
subunit A'' - Thermococcus celer
Length = 393
Score = 105 bits (251), Expect = 1e-20
Identities = 53/100 (53%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNI 1091
+YQ+ +IEPG A+G +AAQSIGEP TQMTL TFH+AGVA +N+T G+PR+ EI++A +N
Sbjct: 52 EYQKALIEPGEAIGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVDARKNP 111
Query: 1092 STPIITAELMQP--YDQEFARRVKGRICTSKLKVKPAEVT 1129
STPI+T L + YD+E A V RI + L+ E T
Sbjct: 112 STPIMTVYLDEEHRYDREKALEVARRIEGTSLENLARETT 151
>UniRef50_P56763 Cluster: DNA-directed RNA polymerase subunit beta';
n=135; Streptophytina|Rep: DNA-directed RNA polymerase
subunit beta' - Arabidopsis thaliana (Mouse-ear cress)
Length = 680
Score = 104 bits (250), Expect = 1e-20
Identities = 96/327 (29%), Positives = 156/327 (47%), Gaps = 48/327 (14%)
Query: 249 PEDLILTRLPVPPLCIRPSVVSDIKAGT-NEDDLTMKQSEILLINDVIARHLASAGKC-- 305
PE ++L LPV P +RP + I+ G D+ ++ N+ + L ++
Sbjct: 261 PEWMVLCLLPVLPPELRPII--QIEGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPG 318
Query: 306 ELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDF 365
EL+ +Q +++ + G P+ K + ++GK+GRFR L GKRVD+
Sbjct: 319 ELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 378
Query: 366 SSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANY-VQ 424
S R+VI P+L + G+P +A I + V +R L+ H +N V
Sbjct: 379 SGRSVIVVGPSLSLHRCGLPREIA-IELFQTFV-------IRGLIRQ----HLASNIGVA 426
Query: 425 QRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP 484
+ ++ KK + + +I QE+ + G VL NR P+LH+L I + +
Sbjct: 427 KSQIREKKPIVW----EILQEV----------MQGHPVLLNRAPTLHRLGIQSFQPILVE 472
Query: 485 QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNK 544
RT + VC +NADFDGD+M +H+P + EA+AEA +LM SH
Sbjct: 473 GRTICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH---------------- 516
Query: 545 SNLVTPRNGELLIAATQDFITGGYLIT 571
NL++P G+ + TQD + G Y++T
Sbjct: 517 MNLLSPAIGDPISVPTQDMLIGLYVLT 543
>UniRef50_A2WZF3 Cluster: DNA-directed RNA polymerase; n=1; Oryza
sativa (indica cultivar-group)|Rep: DNA-directed RNA
polymerase - Oryza sativa subsp. indica (Rice)
Length = 1507
Score = 102 bits (245), Expect = 5e-20
Identities = 88/303 (29%), Positives = 137/303 (45%), Gaps = 14/303 (4%)
Query: 221 SPLEVLNLFRRIPDEDIPLLGMNVKLSRPED-LILTRLPVPPLCIRPSVVSDIKAGTNED 279
S +V N+ ++IP+E L + + P+D IL+ L VPP C+R S V D +
Sbjct: 189 SHCQVQNIIKKIPEETRRWLSVRGYI--PQDGFILSYLCVPPNCLRVSNVLDGNTFSCSG 246
Query: 280 DLT-MKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKK 338
T + + + I + + S+ + + D LQ+ A YIN + G
Sbjct: 247 TSTNLLRKALRKIQQIRGSRIGSSNI--QVDQVADDLQVDVANYIN--LGGTTKG-HGDD 301
Query: 339 PGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERV 398
++ KQ + + K FSSR VI+ DP + + VGVP VAK ++ E+V
Sbjct: 302 TFTSQPTAMQWKQ-KMKTLFISKSSSFSSRGVITGDPYIGLNVVGVPEEVAKRMSVEEKV 360
Query: 399 FPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVD 458
N+ L+ ++ G + Y + N K LK G++V R + D
Sbjct: 361 TDHNIAQLQDMMNKGLCL----TYTDANSITYSLDAGKDNPNKKHTILKVGEIVNRRVFD 416
Query: 459 GDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEAR 518
GD+V NR PS K S+ +V T + N +C P ADFD D + + P++ AR
Sbjct: 417 GDIVFLNRPPSTDKHSVEAFYVQVHNDHTIKINPLICDPLGADFDDDCVQIFYPRSLSAR 476
Query: 519 AEA 521
AEA
Sbjct: 477 AEA 479
Score = 48.0 bits (109), Expect = 0.002
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKV 115
G + EC GHFG+I+L +P+FH + + IL IC C K+
Sbjct: 130 GDAIEECEGHFGFIELPMPIFHPSHVTELSQILNLICLRCLKI 172
Score = 44.8 bits (101), Expect = 0.014
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 849 GFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVR 908
G V +S Y GL P E H++ RE ++ + E G L + ++ L D+ YD ++R
Sbjct: 716 GTVRSSIYHGLNPYEALLHSICEREKIMRASKGLVEPGSLFKNMMSRLRDVTACYDGSIR 775
Query: 909 NATGEVVQFRYGS 921
++G +V ++GS
Sbjct: 776 TSSGNLV-LQFGS 787
>UniRef50_O27126 Cluster: DNA-directed RNA polymerase subunit A'';
n=4; Methanobacteriaceae|Rep: DNA-directed RNA polymerase
subunit A'' - Methanobacterium thermoautotrophicum
Length = 451
Score = 101 bits (242), Expect = 1e-19
Identities = 51/112 (45%), Positives = 73/112 (65%), Gaps = 2/112 (1%)
Query: 1012 LQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVAS 1071
++ L+ +L +R Y R +E G AVG +AAQS+GEPGTQMT++TFH+AGVA
Sbjct: 100 MKKHELSDDELDELIRRVRRAYDRARVEAGEAVGTVAAQSVGEPGTQMTMRTFHYAGVAE 159
Query: 1072 MNITQGVPRVKEIINASRNISTPIITA--ELMQPYDQEFARRVKGRICTSKL 1121
+N+T G+PR+ EI++A + ISTP ++ E YD+EF RR +I S L
Sbjct: 160 LNVTLGLPRLIEIVDARKKISTPTMSIYFEGDLRYDEEFVRRKANKIGKSTL 211
>UniRef50_A7QKE4 Cluster: Chromosome chr2 scaffold_112, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_112, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1360
Score = 101 bits (241), Expect = 2e-19
Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 26/229 (11%)
Query: 358 LSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVH 417
L GKR + S R ++ DP L++ E+G+P H+A+ L E + N + + CN +
Sbjct: 290 LLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTN-GCNLRLLE 348
Query: 418 PGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMC 477
G YV+++G T ++ N + + GD++ R L DGD+VL NR PS+H+ S++
Sbjct: 349 KGQTYVRRKG--TLAPVRRMN------DFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIA 400
Query: 478 HRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVII 536
KV P N C+P+ DFDGD ++ ++PQ+ ++R E L
Sbjct: 401 LSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSEL------------ 448
Query: 537 RVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQL 585
V+L + L+ ++G L++ +QD ++ +L+ + + QQL
Sbjct: 449 -VALNR---QLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQL 493
Score = 62.9 bits (146), Expect = 5e-08
Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 28/209 (13%)
Query: 729 AKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFREL 788
++N L+ SG + +G + +++ + Q + ++ + I+ L ++
Sbjct: 566 SQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLV----YQYA 621
Query: 789 HPTNAPLIMAQSGSKGSNINISQMIACVGQQ-----------------ALNGKRVPNGFE 831
+ N+ L M ++GSKG+ + + Q C+G Q A N ++VP +
Sbjct: 622 NKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQ 681
Query: 832 DRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRR 891
+ + + E S IP A VENSF GL P E F H++ R+ G L RR
Sbjct: 682 NDTSEYAE--SYIPYA--VVENSFLMGLNPLECFVHSVTSRDSSFSDNADLP--GTLTRR 735
Query: 892 LVKSLEDLVLQYDMTVRNATG-EVVQFRY 919
L+ + DL + YD TVRNA G ++VQF Y
Sbjct: 736 LMFFMRDLYIAYDGTVRNAYGNQLVQFSY 764
Score = 46.8 bits (106), Expect = 0.004
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 48 RVPAPHGVLDRRMGTNQKDANCETCGL-GLAECVGHFGYIQLTLPVFHVGYFRAIITILQ 106
++ A + + D ++G C TCG +C GHFG I+ + H + ++ IL
Sbjct: 36 KIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILN 95
Query: 107 TICKEC 112
IC C
Sbjct: 96 KICPGC 101
>UniRef50_Q0P3M5 Cluster: DNA-directed RNA polymerase subunit beta';
n=1; Ostreococcus tauri|Rep: DNA-directed RNA polymerase
subunit beta' - Ostreococcus tauri
Length = 740
Score = 101 bits (241), Expect = 2e-19
Identities = 102/342 (29%), Positives = 156/342 (45%), Gaps = 47/342 (13%)
Query: 248 RPEDLILTRLPVPPLCIRPSV-VSDIKAGTNE-DDLTMKQS-EILLINDVIARHLASAGK 304
RPE +IL+ PV P +RP + +S + T++ +DL + + +
Sbjct: 308 RPEWMILSIFPVLPPDLRPMIQMSSGRFATSDLNDLYRRLIYRKIRFEKFLTLFDEEFLP 367
Query: 305 CELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVD 364
LI+ D LQ A I++ P +KP + L ++GK GRFR NL GKRVD
Sbjct: 368 DLLIRHDLCLLQEAADSIIDNGRLDKPAQRPNRKPFKSLTSIIEGKHGRFRQNLLGKRVD 427
Query: 365 FSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQ 424
+S R+VI P L++ + G+P +A L P V A L+ ++ N +Q
Sbjct: 428 YSGRSVIVVGPKLRLHQCGLPREMALELFQPF-VIRALLE-----ESGVKNIRAAKNLLQ 481
Query: 425 QRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP 484
+R D+++ +V G VL NR P+LH+L I +
Sbjct: 482 RRSQMV------------------WDILDT-VVLGHPVLLNRAPTLHRLGIQAFEPILLS 522
Query: 485 QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEA-LILMGSHNTAVTVIIRVSLEQN 543
R + + VC +NADFDGD+M +H+P EA+AEA L+++ +H
Sbjct: 523 GRAIQLHPLVCPAFNADFDGDQMAVHVPLGLEAQAEARLLMLATH--------------- 567
Query: 544 KSNLVTPRNGELLIAATQDFITG-GYLITQRDTFFTKSEAQQ 584
N ++P GE I +QD I G YL T + T K +Q
Sbjct: 568 --NWLSPATGEPSILPSQDMILGFYYLTTLKPTVSLKRPVEQ 607
>UniRef50_Q1KVT3 Cluster: DNA-directed RNA polymerase; n=1;
Scenedesmus obliquus|Rep: DNA-directed RNA polymerase -
Scenedesmus obliquus
Length = 1529
Score = 100 bits (240), Expect = 2e-19
Identities = 92/328 (28%), Positives = 143/328 (43%), Gaps = 46/328 (14%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
S P +IL LPV P +RP + ++ DL I+ ND + + + +
Sbjct: 1098 SNPTFMILKNLPVLPPDLRP--ILKLQNQIAASDLNRFYQRIIYRNDRLKKFAKDSATNQ 1155
Query: 307 LIQEDWDYLQLHAAL--YINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRV 363
+ + L A+ I + + + +P + L + LKGKQGRFR L GKRV
Sbjct: 1156 SFEIKYAQRLLQEAVDNLIQNGKGSVKAETNSRGQPLKSLSEILKGKQGRFRQYLLGKRV 1215
Query: 364 DFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV 423
D+S R+VI P L++ E G+P +A E P +Q++ + N +
Sbjct: 1216 DYSGRSVIVVGPELKLYECGLPKEMAL-----ELFLPFLIQYILQ------------NKL 1258
Query: 424 QQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQ 483
Q + K LK + + + ++ +L NR P+LH+L K+
Sbjct: 1259 AQTVVGAKNLLKSDSNLTLH--------LLHKVIKNIPILLNRAPTLHRLGFQAFLPKLI 1310
Query: 484 PQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQN 543
R + VC +NADFDGD+M +H+P T EAR EA M + N
Sbjct: 1311 EGRAILLHPMVCPSFNADFDGDQMAVHIPLTVEARTEAWKFMLATN-------------- 1356
Query: 544 KSNLVTPRNGELLIAATQDFITGGYLIT 571
NL+ GE +I +QD + G Y +T
Sbjct: 1357 --NLMNSATGEAIILPSQDMVLGCYYLT 1382
>UniRef50_Q1L5Y1 Cluster: DNA-directed RNA polymerase; n=1;
Ceratopteris thalictroides|Rep: DNA-directed RNA
polymerase - Ceratopteris thalictroides
Length = 836
Score = 99.1 bits (236), Expect = 6e-19
Identities = 120/456 (26%), Positives = 199/456 (43%), Gaps = 83/456 (18%)
Query: 500 ADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAA 559
ADFDGD + + +PQ+ E++ E LM N ++T G+
Sbjct: 2 ADFDGDCLAVFVPQSLESKTEVKELMMVEN----------------QMLTSHGGQCTFTL 45
Query: 560 TQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRK--LWTGKQ 617
TQD + G +T F ++ + AC+ +T+ P PA+IK K WTG Q
Sbjct: 46 TQDALLGACKLTSPHLFLSRQTME--IACM--NTSSTL----PKPAVIKSPKGPFWTGVQ 97
Query: 618 IFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTK 677
F L + NY N V I E++ + D LG G++
Sbjct: 98 CFQLSL-------------PSAVNYDMNG--------VRISCGEILNITHDPEWLG-GSR 135
Query: 678 SSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDV------TPGKKLIEAKN 731
+S+ Y +++ +G A+ + + + ++ +GF+ G+ DV T KL +A
Sbjct: 136 NSLLYQIIQQFGGNVALNYLGAVESLLVEWISRKGFTVGLYDVYATADWTTRDKLKKAIQ 195
Query: 732 KLL----ESGYSKCDGYILEME--KGTLQCQPGCTMEETLEAVMLSELSSIRELAA---- 781
+ + K L+ + G ++ G ++E A++ S S + E A
Sbjct: 196 VNIGEEEKQVRRKLQDLSLQSDISLGEMKLSMGLSVESN--AIIPSMYSRMAEKIALKYM 253
Query: 782 -KAC-------FRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRV-PNGFED 832
K C + + N+ L M + GSKGS S+ A +G Q GK + P
Sbjct: 254 QKLCSHIESDSVKNANADNSMLEMVRCGSKGSIKKFSEQFAFLGLQPYKGKFMHPTKNMQ 313
Query: 833 RSLPH-------FERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAET 885
S H +++ + RG V++SF GL+P EFF HT+ RE ++ A++ +E
Sbjct: 314 LSCMHQDEQNVMYDQDGFLWGERGIVKSSFAEGLSPQEFFVHTVSYRETMIHKALRVSEP 373
Query: 886 GYLQRRLVKSLEDLVLQYDMTVRNATGE-VVQFRYG 920
GYL + +V D+ + YD TVR+ G+ ++QF YG
Sbjct: 374 GYLYKNMVLFARDVCMHYDGTVRSEHGKHIIQFDYG 409
>UniRef50_P56300 Cluster: DNA-directed RNA polymerase subunit beta';
n=1; Chlorella vulgaris|Rep: DNA-directed RNA polymerase
subunit beta' - Chlorella vulgaris (Green alga)
Length = 836
Score = 99.1 bits (236), Expect = 6e-19
Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 41/234 (17%)
Query: 338 KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPER 397
+P + L+ LKGK+GRFR +L GKRVD+S R+VI P L++ + G+P +A L P
Sbjct: 485 RPLKSLLDGLKGKKGRFRQHLLGKRVDYSGRSVIVVGPKLKLHQCGLPKEMAVELFQPFI 544
Query: 398 VFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLV 457
+ LQ + V T + +R+ I + G++++RH
Sbjct: 545 IQQLRLQGIVFTV-------------------TAAKVLIADRKPIVWSV-LGEILKRH-- 582
Query: 458 DGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEA 517
VL NR P+LH+L I ++ + + VC +NADFDGD+M +H+P + +
Sbjct: 583 ---PVLLNRAPTLHRLGIQAFLPRLVEGKAILLHPLVCPAFNADFDGDQMAVHVPLSAKT 639
Query: 518 RAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLIT 571
RAEAL L+ S N L+ P +G+ TQD + G Y +T
Sbjct: 640 RAEALSLLWSRN----------------QLLAPSSGQPQHLPTQDMVLGFYYLT 677
>UniRef50_A6YGE1 Cluster: DNA-directed RNA polymerase; n=1; Leptosira
terrestris|Rep: DNA-directed RNA polymerase - Leptosira
terrestris (Pleurastrum terrestre)
Length = 2003
Score = 97.5 bits (232), Expect = 2e-18
Identities = 75/232 (32%), Positives = 118/232 (50%), Gaps = 43/232 (18%)
Query: 341 RGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFP 400
+ L LKGK+GRFR NL GKRVD+S R+VI P+L++ + G+PV +A L P V
Sbjct: 1645 KSLSDVLKGKRGRFRQNLLGKRVDYSGRSVIVVGPHLKVHQCGLPVEMAIHLFQPFLVSE 1704
Query: 401 ANLQWLRRLVCNGPDVHPGANYV-QQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDG 459
Q P N + +R ++T+ + + +C ++ + D
Sbjct: 1705 LMKQ------------DPTLNIIGAKRLIETQSPVVW----------RCLQII---MNDH 1739
Query: 460 DVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARA 519
V+L NR P+LH+L I + K+ R + VCT +NADFDGD+M +H+P ++EA A
Sbjct: 1740 PVLL-NRAPTLHRLGIQAFQPKLIAGRAILLHPMVCTAFNADFDGDQMAVHVPLSKEACA 1798
Query: 520 EALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLIT 571
E+ L+ S N +++P G+ L+ +QD + G Y +T
Sbjct: 1799 ESWALLWSRN----------------QIMSPATGQPLMVPSQDMVLGCYYLT 1834
>UniRef50_Q2EEW9 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase -
Helicosporidium sp. subsp. Simulium jonesii (Green alga)
Length = 834
Score = 94.3 bits (224), Expect = 2e-17
Identities = 63/196 (32%), Positives = 98/196 (50%), Gaps = 23/196 (11%)
Query: 332 LAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKI 391
L + KP ++ LKGK G+ R NL GKRVD+S R+VI P+L+I E G+P +A
Sbjct: 495 LILDNVKP-TSILDSLKGKYGKIRFNLLGKRVDYSGRSVIISAPHLKIYECGIPYEMALT 553
Query: 392 LTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDV 451
L YP F + + + N + ++ + + Y + L+ +
Sbjct: 554 LYYP---FLSEYFYKKN------------NNILKKNYNKSELVLYSKSLIFTKSLQ--SI 596
Query: 452 VERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHL 511
+ H ++ NR P+LH+L I K+ + + VC +NADFDGD+M +H+
Sbjct: 597 LLSH-----PIIINRAPTLHRLGIQSFLPKLTHSKAIELHPLVCPAFNADFDGDQMAIHV 651
Query: 512 PQTEEARAEALILMGS 527
P TE A+ EA+ LM S
Sbjct: 652 PITEIAKLEAIQLMAS 667
>UniRef50_A3AWK7 Cluster: DNA-directed RNA polymerase; n=4; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
subsp. japonica (Rice)
Length = 1667
Score = 94.3 bits (224), Expect = 2e-17
Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 36/265 (13%)
Query: 361 KRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGA 420
KR D + R+++ DP + + E+G+P+ +A L E+V N + + L CN +
Sbjct: 279 KRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYNFETI-NLKCNLHLLTKEV 337
Query: 421 NYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRA 480
V++ G L + + A +L+ GD+ R L DGD+VL NR PS+H+ S++ A
Sbjct: 338 LLVRRNG-----NLIFVRK---ANQLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSA 389
Query: 481 K-VQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVS 539
K + Q N C P+ DFDGD ++ ++PQ ++R E L+G
Sbjct: 390 KLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEELVGL------------ 437
Query: 540 LEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRI 599
L+ ++G L++ T D + + +T D F K+E QQL L + T
Sbjct: 438 ----SGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQL-QMLSSSISLT--- 489
Query: 600 DMPPPAIIKPRK----LWTGKQIFS 620
P P++ K LWT +FS
Sbjct: 490 --PMPSVFKSTNSQGPLWTDLYLFS 512
Score = 55.2 bits (127), Expect = 1e-05
Identities = 48/152 (31%), Positives = 66/152 (43%), Gaps = 24/152 (15%)
Query: 792 NAPLIMAQSGSKGSNINISQMIACVGQQALNGK---RVPNGFEDRSLPHFERHSKIPAA- 847
N+ + M SGSKGS + Q ACVG Q K R+P+ S + RH +
Sbjct: 602 NSMMTMINSGSKGSVLKFVQQTACVGLQLPASKFPFRIPSQL---SCVSWNRHKSLNCEI 658
Query: 848 -------------RGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVK 894
V NSF GL P E H + GR G L R+L+
Sbjct: 659 TDGTSECVGGQDMYAVVRNSFLDGLNPLECLLHAISGRANFFSENADV--PGTLTRKLMY 716
Query: 895 SLEDLVLQYDMTVRNATG-EVVQFRYG-SDGL 924
L D + YD TVR++ G ++V+F Y +DG+
Sbjct: 717 HLRDTYVAYDGTVRSSYGQQIVRFSYDTADGM 748
>UniRef50_Q2N124 Cluster: RNA polymerase III large subunit; n=1;
Leucosolenia sp. AR-2003|Rep: RNA polymerase III large
subunit - Leucosolenia sp. AR-2003
Length = 227
Score = 93.5 bits (222), Expect = 3e-17
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 5/116 (4%)
Query: 887 YLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVR 946
Y+QRRLVKSLEDL L+YDM+VR++ G++VQF YG D LDP MEGKD PVD R + ++
Sbjct: 1 YMQRRLVKSLEDLCLEYDMSVRSSVGDIVQFDYGGDNLDPACMEGKDIPVDFPRTMHHIQ 60
Query: 947 AK-C----QDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFKNELLSFLKATAGRV 997
+ C ++ PL ++ A L ++ + EF + L F + A +V
Sbjct: 61 SNFCAMSGSNETDVPLSASQLMRAVNYALRMEKVASCNQEFLDGLRKFFQEMAAKV 116
Score = 72.5 bits (170), Expect = 6e-11
Identities = 35/47 (74%), Positives = 38/47 (80%)
Query: 1017 LTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKT 1063
+TL+QL F VC KY R IEPGTAVGA+AAQSIGEPGTQMTLKT
Sbjct: 181 VTLSQLKEFFDVCIDKYMRARIEPGTAVGAVAAQSIGEPGTQMTLKT 227
>UniRef50_O21238 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase -
Reclinomonas americana
Length = 1384
Score = 93.5 bits (222), Expect = 3e-17
Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 31/231 (13%)
Query: 341 RGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFP 400
+ L++RL GK+GRFR ++ GKR++FS RTVI+ P L + + G+P+ + L P +
Sbjct: 335 KSLIKRLSGKKGRFRKDILGKRINFSGRTVITSGPRLHLNQCGLPIELVLELFKPFII-- 392
Query: 401 ANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGD 460
L+ +C+ + Y + + K+ + +L ++ +H
Sbjct: 393 --LKMRDLNICSQTSLKNLKTYDDFKQILFNKF-----TINLVFKL-INSIISKH----- 439
Query: 461 VVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAE 520
VL NR P+LH+++I + + + + VC+ +NADFDGD M +++P T ++ E
Sbjct: 440 PVLLNRAPTLHRMNIQTFSPLLIYTKAIQLHPLVCSSFNADFDGDTMAIYIPHTLRSQIE 499
Query: 521 ALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLIT 571
+ +LM + +N+++P E +I+ TQD + G Y T
Sbjct: 500 SRVLM----------------MSSTNIISPSTQEPIISPTQDIVFGLYYAT 534
Score = 48.0 bits (109), Expect = 0.002
Identities = 20/49 (40%), Positives = 35/49 (71%)
Query: 853 NSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL 901
++F GL+ ++F T G R+G++DT++KTA +GYL R+L + +DL +
Sbjct: 761 SNFKEGLSVVDYFNSTHGARKGVIDTSLKTAASGYLTRKLFYAAKDLFI 809
Score = 44.0 bits (99), Expect = 0.025
Identities = 17/26 (65%), Positives = 23/26 (88%)
Query: 1043 AVGALAAQSIGEPGTQMTLKTFHFAG 1068
++G +AAQSIGEPGTQ+T++TFH G
Sbjct: 916 SIGIIAAQSIGEPGTQLTMRTFHQGG 941
>UniRef50_Q03586 Cluster: DNA-directed RNA polymerase subunit A'';
n=6; Thermoplasmatales|Rep: DNA-directed RNA polymerase
subunit A'' - Thermoplasma acidophilum
Length = 508
Score = 90.2 bits (214), Expect = 3e-16
Identities = 48/111 (43%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPII 1096
+I+P AVG +AAQSIGEPGTQMT++TFHFAGV MN+T G+PR+ EI++A R STP +
Sbjct: 176 LIDPYEAVGIIAAQSIGEPGTQMTMRTFHFAGVREMNVTLGLPRLIEIVDARRIPSTPSM 235
Query: 1097 TAELMQPYD--QEFARRVKGRICTSKLKVKPAEVTAVSAWAIKVTGEPSKS 1145
T L Y+ E V R+ + + +T + + V +P K+
Sbjct: 236 TIYLRPEYETNDEVVMDVVKRLENTSISDVADIITDIGELTVTVRPDPRKT 286
>UniRef50_Q8PUR2 Cluster: DNA-directed RNA polymerase subunit A'';
n=3; Methanosarcina|Rep: DNA-directed RNA polymerase
subunit A'' - Methanosarcina mazei (Methanosarcina
frisia)
Length = 408
Score = 89.8 bits (213), Expect = 4e-16
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNI 1091
+Y IEP A G +AAQSIGEPGTQMT++TFH+AGVA +N+T G+PR+ EI++A +
Sbjct: 50 EYTVSCIEPCDAAGVVAAQSIGEPGTQMTMRTFHYAGVAEINVTLGLPRLIEIVDARKIP 109
Query: 1092 STPIITAELMQPYDQEFA 1109
STP++T L + + +++A
Sbjct: 110 STPMMTIALSKEHPEDYA 127
>UniRef50_Q0PNI1 Cluster: DNA-directed RNA polymerase; n=58;
Basidiomycota|Rep: DNA-directed RNA polymerase -
Malassezia pachydermatis
Length = 240
Score = 89.0 bits (211), Expect = 7e-16
Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 10/247 (4%)
Query: 82 HFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEMSYLLKKN 141
HFG+I L PVFHVG+ + +L+ +C C K+ ++ + + L+K
Sbjct: 1 HFGHIDLARPVFHVGFLGKVKKLLECVCVHCGKLKADPISDPVFKSLL---QSTRTLRKR 57
Query: 142 LKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKKVLMDF--- 198
V + + C + EA + + KI H +P I K+ L F
Sbjct: 58 RFQRVWEYCSKITICEADEA-KEEDEFGDVTQQKIGHGGCGRLQPA--IRKEALKLFTVW 114
Query: 199 HEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLP 258
++K + E + + ++ EV + +++ ED+ LG++ + ++P+ ++LT LP
Sbjct: 115 RQSKNEDDEDGGRMAQSEKRPLTAAEVHTILKKVSPEDVVTLGLSEEFAQPDWMVLTVLP 174
Query: 259 VPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLH 318
VPP +RP V++ +G +DDLT K ++I+ + + R ++ + D LQ H
Sbjct: 175 VPPPQVRPG-VTEFGSGMGQDDLTYKLADIIKASANLRRMEQEGAPAHILNDFADLLQYH 233
Query: 319 AALYINS 325
A Y+++
Sbjct: 234 VATYMDN 240
>UniRef50_A1RWW4 Cluster: DNA-directed RNA polymerase, subunit A'';
n=1; Thermofilum pendens Hrk 5|Rep: DNA-directed RNA
polymerase, subunit A'' - Thermofilum pendens (strain Hrk
5)
Length = 403
Score = 89.0 bits (211), Expect = 7e-16
Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Query: 1017 LTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQ 1076
L+ ++ + + +Y ++ PG AVG +AAQSIGEP TQMTL+TFHFAGV +N+T
Sbjct: 38 LSRSEALSVINEALRRYLSSLVSPGEAVGMVAAQSIGEPATQMTLRTFHFAGVRELNVTL 97
Query: 1077 GVPRVKEIINASRNISTPIITAELMQPY--DQEFARRVKGRI 1116
G+PR+ EI++ R STPI+ L + D +FA ++ I
Sbjct: 98 GLPRLIEIVDLRREPSTPIMEVYLEPEHAKDLDFALKIAREI 139
>UniRef50_Q5ELZ9 Cluster: DNA-directed RNA polymerase; n=47;
Basidiomycota|Rep: DNA-directed RNA polymerase -
Phanerochaete chrysosporium (White-rot fungus)
(Sporotrichumpruinosum)
Length = 232
Score = 88.6 bits (210), Expect = 9e-16
Identities = 76/240 (31%), Positives = 105/240 (43%), Gaps = 9/240 (3%)
Query: 78 ECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEMSYL 137
EC GHFG+I+L PVFH G+ + IL+ IC C ++ S F +
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGRLKADIS-----DPTFADRIRHVR 55
Query: 138 LKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKKVLMD 197
K VV K C E K H A +P I K+ L
Sbjct: 56 DPKARMQVVWNYCKGKMLCEPDEP-RDETDNMDNDEPKRGHGGCGAAQP--QIRKEGLKL 112
Query: 198 FHEAKESNKEVAAMINSGLVKEM-SPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTR 256
F + K S E + K + P EV N ++IPD D+ LLG++ + +RPE +ILT
Sbjct: 113 FVQYKRSKDEDEEVKTLQPDKRLFPPHEVYNALKKIPDSDLHLLGLSDEYARPEWMILTV 172
Query: 257 LPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQ 316
LPVPP +RPS+ D +EDDLT K +I+ + + R +I E LQ
Sbjct: 173 LPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQLLQ 232
>UniRef50_A7P7C3 Cluster: Chromosome chr9 scaffold_7, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr9 scaffold_7, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 692
Score = 86.2 bits (204), Expect = 5e-15
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 46/242 (19%)
Query: 335 QPKKPGRGLVQRL-----KGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVA 389
QP G V +L +GK+GRF L GKRVD+S R+VI P+L + + G+P +A
Sbjct: 56 QPMSDGHNKVYKLFSDVIEGKEGRFHETLLGKRVDYSGRSVIVVGPSLSLHQCGLPREIA 115
Query: 390 KILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCG 449
L + F L+C+ H +N G+ K ++ +E I E+
Sbjct: 116 IKLF---QTF---------LICSLIRQHLASNI----GV-AKSQIR--EKEPIVWEI-LQ 155
Query: 450 DVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNM 509
+V+ H VL NR P+LH+L I + + +R + V +NADFDGD+M +
Sbjct: 156 EVMRWH-----PVLLNRAPTLHRLGIQAFQPILVERRAICLHPLVRKGFNADFDGDQMVV 210
Query: 510 HLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYL 569
H+P + EA++EA +LM SH NL++P G+ + TQD + G Y+
Sbjct: 211 HVPLSLEAQSEARLLMFSH----------------MNLLSPAIGDPISIPTQDMLIGLYV 254
Query: 570 IT 571
+T
Sbjct: 255 LT 256
Score = 49.6 bits (113), Expect = 5e-04
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGV 1069
++E G VG +A QSIGEPGTQ+TL+TFH GV
Sbjct: 618 LVELGEVVGIIAGQSIGEPGTQLTLRTFHTGGV 650
Score = 45.2 bits (102), Expect = 0.011
Identities = 19/52 (36%), Positives = 36/52 (69%)
Query: 851 VENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
++++ GL+ TE+ R+G+VDT V+T++ GYL RRLV+ ++ +V++
Sbjct: 472 IQSNLREGLSLTEYIISCYEVRKGVVDTVVRTSDVGYLTRRLVEVVQHIVVR 523
>UniRef50_Q9YAU2 Cluster: DNA-directed RNA polymerase subunit A'';
n=19; Archaea|Rep: DNA-directed RNA polymerase subunit
A'' - Aeropyrum pernix
Length = 407
Score = 85.4 bits (202), Expect = 8e-15
Identities = 37/78 (47%), Positives = 55/78 (70%)
Query: 1033 YQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNIS 1092
Y R + +PG AVG +AAQSIGEPGTQMTL+TFH+AG+ ++T G+PR+ EI++A + S
Sbjct: 52 YLRSLAQPGEAVGTVAAQSIGEPGTQMTLRTFHYAGIMEFDVTLGLPRLIEIVDAKQTPS 111
Query: 1093 TPIITAELMQPYDQEFAR 1110
P++ L Y ++ +
Sbjct: 112 QPLMYIYLKDEYAKDLEK 129
>UniRef50_Q8ZYQ7 Cluster: DNA-directed RNA polymerase subunit A'';
n=5; Thermoproteaceae|Rep: DNA-directed RNA polymerase
subunit A'' - Pyrobaculum aerophilum
Length = 379
Score = 83.8 bits (198), Expect = 3e-14
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 1033 YQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNIS 1092
Y +I+PG A+G + AQSIGEPGTQM L++FH+AG+ ++ +G+PR+ E+++A R S
Sbjct: 46 YVTSLIDPGEAIGIVTAQSIGEPGTQMILRSFHYAGLREFSMARGLPRLIEVVDARRTPS 105
Query: 1093 TPIITAELMQPYD--QEFARRVKGRICTSKLKVKPAEV 1128
TP++ L PY+ +E A V +I L+ EV
Sbjct: 106 TPLMYVYLKPPYNKSREAAESVAKKIQQVTLETLAKEV 143
>UniRef50_P15354 Cluster: DNA-directed RNA polymerase subunit A'';
n=6; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit A'' - Halobacterium salinarium (Halobacterium
halobium)
Length = 397
Score = 83.4 bits (197), Expect = 3e-14
Identities = 36/73 (49%), Positives = 53/73 (72%)
Query: 1038 IEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIIT 1097
++P VG ++AQSIGEPGTQMT+ TFH+AGVA M++TQG+PR+ E+++A + TP++
Sbjct: 57 VDPLDPVGTVSAQSIGEPGTQMTMNTFHYAGVAEMDVTQGLPRLIELVDARKTPDTPVME 116
Query: 1098 AELMQPYDQEFAR 1110
L Y +E R
Sbjct: 117 VYLEDEYAEERER 129
>UniRef50_A5CB27 Cluster: DNA-directed RNA polymerase; n=2; Vitis
vinifera|Rep: DNA-directed RNA polymerase - Vitis
vinifera (Grape)
Length = 251
Score = 83.0 bits (196), Expect = 4e-14
Identities = 38/108 (35%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 14 KISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCG 73
K+ V F V SP I+Q + +E I ++ ++ G+ P G+ D R+G K C+TC
Sbjct: 14 KVRAVQFGVXSPDEIRQMSVVE-IDQSETMERGK--PKRGGLADPRLGAMGKTQKCDTCM 70
Query: 74 LGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESL 121
+A C GHFG+++L P+FH G+ R ++T+L+ +C C++++ E L
Sbjct: 71 GSMAXCPGHFGHLELAKPMFHTGFMRTVLTVLRCVCFSCSRILSDEVL 118
>UniRef50_Q1L5X8 Cluster: DNA-directed RNA polymerase; n=1; Sphagnum
sp. JL-2005|Rep: DNA-directed RNA polymerase - Sphagnum
sp. JL-2005
Length = 969
Score = 82.2 bits (194), Expect = 8e-14
Identities = 119/458 (25%), Positives = 186/458 (40%), Gaps = 78/458 (17%)
Query: 497 PYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELL 556
PYNADFDGD ++ +PQ+ EA E LM TV + ++ + G L
Sbjct: 1 PYNADFDGDIFHIFVPQSVEAMVELKELM-------TV---------QQQIICSQGGLPL 44
Query: 557 IAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRK---LW 613
+ TQD + +L+T + F K QL A +P AI+K K LW
Sbjct: 45 LGLTQDTLLAAHLMTCQKVFLDKVSMDQLQMWSSAAV-------VPEAAILKSPKGGPLW 97
Query: 614 TGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLG 673
TG+Q++SL + D D V+IRN E++ L
Sbjct: 98 TGEQLYSLTL-------------------PAGVDFHTLDGEVLIRNGEILKTGFSSKWLQ 138
Query: 674 SGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIID--VTPGKK------ 725
G ++S+ + G E V + + ++ + GFS G+ D VT K
Sbjct: 139 KG-RNSLIDAICDQSGPEAVVEYLNSAKGLLHAWLDSNGFSTGLTDFLVTSNAKERRSML 197
Query: 726 -------LIEAKNKLLESGYSKCDG-YILEMEKGTLQCQPGCTMEETLEAVMLSELSSIR 777
L AK + + + CD + L L+ E A + +++ +
Sbjct: 198 QRVSVDCLQRAKEQSINT-LQICDAKFQLSHLSVDLEVDGAFDRLEVNPASLSNKVQMLE 256
Query: 778 ELAAKACFRELH-----------PTNAPLIMAQSGS-KGSNINISQMIACVGQQALNGKR 825
+A KA + N+ M ++GS K S + IAC+G Q G+
Sbjct: 257 SIAIKAFRASMAGMGNIVQESSVSQNSLFSMVKAGSTKASMSKLLDQIACMGLQLYKGEH 316
Query: 826 V-P-NGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTA 883
+ P + + S P + + G V+NS GLT + F H + R ++ V+
Sbjct: 317 MLPFSHVLNNSAPLESQLQEWWEDHGLVQNSLVDGLTAFQLFNHVIANRTSILRKHVEVV 376
Query: 884 ETGYLQRRLVKSLEDLVLQYDMTVRNATGE-VVQFRYG 920
+ G L + L+ L DL + YD TVR+ G+ VVQF YG
Sbjct: 377 QPGTLFKVLMLFLRDLHVGYDGTVRSQCGQKVVQFCYG 414
>UniRef50_A6NYC6 Cluster: DNA-directed RNA polymerase; n=1;
Bacteroides capillosus ATCC 29799|Rep: DNA-directed RNA
polymerase - Bacteroides capillosus ATCC 29799
Length = 1101
Score = 81.4 bits (192), Expect = 1e-13
Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 45/238 (18%)
Query: 337 KKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPE 396
K + ++ +L GK G R + GKRVD+S R+VI+ DP L I+ V +P +A
Sbjct: 296 KSSRKSVLDKLTGKHGHIREKMLGKRVDYSGRSVITIDPFLSIRNVKLPRDMA------P 349
Query: 397 RVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHL 456
++F +++ L + N P+ ++ R+K ++ ++
Sbjct: 350 KLFRSHI--LSSM--NNPN--------------PSDWIGMDKRDKCNSKIAASGII---- 387
Query: 457 VDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEE 516
D V+ RQP+LHK S+ +AK+ +R+ R N T +NADFDGD+M + +P +E
Sbjct: 388 -DDIPVVIGRQPTLHKPSMRAFKAKLTNERSIRINPLCVTGFNADFDGDQMWVRVPVSEG 446
Query: 517 ARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRD 574
A E LM S+EQ N+ P+NGE + Q+ I G + T+ D
Sbjct: 447 AVQEVRDLM-------------SIEQ---NIYYPKNGECSVMPRQEIIYGLNVCTRAD 488
Score = 47.6 bits (108), Expect = 0.002
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 20/147 (13%)
Query: 758 GCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVG 817
G E +A SI F + + + +A+SG++GS N+ QM
Sbjct: 623 GLEEESAYDATYDKNFRSIETKVKDTIFDRVGKESGFVRLAESGARGSKSNMVQMY---- 678
Query: 818 QQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVD 877
G++ R + S + + +E+S+ LTP E F GGR+GL++
Sbjct: 679 -----------GYKGRI-----QKSSSESFKAVIEHSYTEQLTPLEHFVTAYGGRQGLIN 722
Query: 878 TAVKTAETGYLQRRLVKSLEDLVLQYD 904
++ TA+TGY R++ + V+ D
Sbjct: 723 KSLNTADTGYAMRKMWHATSPYVITCD 749
Score = 39.5 bits (88), Expect = 0.54
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 1041 GTAVGALAAQSIGEPGTQMTLKTFHFAGVAS 1071
G VG +AA SIGEPGTQ+++ +F G+AS
Sbjct: 839 GLPVGFIAAHSIGEPGTQLSMDSFKKGGIAS 869
>UniRef50_Q9YW50 Cluster: DNA-directed RNA polymerase; n=2;
Entomopoxvirinae|Rep: DNA-directed RNA polymerase -
Melanoplus sanguinipes entomopoxvirus (MsEPV)
Length = 1319
Score = 79.8 bits (188), Expect = 4e-13
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 5/178 (2%)
Query: 350 KQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRL 409
K+G R + +R D + R V P +I +G+P VA LT Q +R L
Sbjct: 291 KEGILRSYILARRSDNTGRGVAGPII-AKIGYLGIPEIVASTLTESIYYNRFTEQKVRDL 349
Query: 410 VCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQ--ELKCGDVVERHLVDGDVVLFNRQ 467
+ N PDV Y LK L+ KI ++K GD +E L + ++LF+RQ
Sbjct: 350 IYNSPDVKFIVLY-NYEALKPATILEVRPEAKINNLLKIKYGDRIEIPLQNYSMILFSRQ 408
Query: 468 PSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILM 525
PSLHK +I C + +TF + N D+DGDE+N++ P++ + EA LM
Sbjct: 409 PSLHKFNIQCAFCLIHKAQTFSTPTAIANSMNLDYDGDELNIYKPKSPSS-IEACFLM 465
Score = 40.7 bits (91), Expect = 0.23
Identities = 53/261 (20%), Positives = 107/261 (40%), Gaps = 8/261 (3%)
Query: 656 IIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSF 715
+I+N +L+ +D L S + +++ ++ + + V + L +A + GFS
Sbjct: 543 VIQNGKLILPMIDSRYLVSQSYNALANLMSQLKNNVFGVHLIDILLYIARNVIKLYGFSV 602
Query: 716 GIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTME-ETLEAVMLSELS 774
+ DV P IE K + + +L+ + + LE + +
Sbjct: 603 SLHDVIPKLNYIEDMYKFVNNCCKIAHYKLLKYYNSNQLNNNNILLSYDELENIRIDNSK 662
Query: 775 SIRELAAKAC---FRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFE 831
I K F++ + N+ + M + K ++ ++ +I C GQQ L+ +P
Sbjct: 663 IIINEVIKRIGNVFKDDY-LNSIITMKNTRYKINDNELATIIGCTGQQGLDSNEIPKPSV 721
Query: 832 DRSLPHFERHSKIP-AARGFVENSFYTGLTPTEFFFHT-MGGREGLVDTAVKTAETGYLQ 889
+ F I + GF+++S GL+ E H + ++ +T+ G
Sbjct: 722 MGRIFDFNVPGNIDMESLGFIKSSTLKGLSFAEMCAHAKYNSIKKILKITCETSSAGSTG 781
Query: 890 RRLVKSLEDLVL-QYDMTVRN 909
R+LVK +E + + Y+ V N
Sbjct: 782 RKLVKFMEGIKIDHYNRAVLN 802
>UniRef50_Q3LWH2 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1359
Score = 78.2 bits (184), Expect = 1e-12
Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 11/132 (8%)
Query: 791 TNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGF 850
+N+ L M ++G+KGS NI + +G+ L+ PN R++ R F
Sbjct: 762 SNSLLNMVKAGAKGSERNIFLITFFMGRIELS--LYPNL---RNMIDINR-----IVNNF 811
Query: 851 VENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNA 910
+ ++ GL+ EFF HT+ GR GL+DTA K + +GYLQR L+K LE+L L+ D T+RN+
Sbjct: 812 IFGNYLLGLSNFEFFAHTLSGRLGLLDTATKVSRSGYLQRSLIKMLENLYLENDATIRNS 871
Query: 911 TG-EVVQFRYGS 921
E++ F Y S
Sbjct: 872 INKEILDFYYYS 883
Score = 66.9 bits (156), Expect = 3e-09
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 454 RHLVDGDVVLFNRQPSLHKLSIMCHRAK-VQPQRTFRFNECVCTPYNADFDGDEMNMHLP 512
R+L D VL NRQP+LH L ++ H+ K + T + N C YN DFDGDE+N H+
Sbjct: 430 RNLKQDDYVLVNRQPTLHNLGLLSHKIKLISTDHTIKMNYINCKSYNLDFDGDEINFHVI 489
Query: 513 QTEEARAEALIL 524
+ E+++E+ L
Sbjct: 490 RGYESKSESTFL 501
Score = 48.4 bits (110), Expect = 0.001
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 1044 VGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEII 1085
+G L QSIGEP TQMTL TFH G+ + + +G+P + +++
Sbjct: 1019 LGVLCGQSIGEPLTQMTLNTFHNTGIVNEGVNRGIPYLVQLV 1060
Score = 48.0 bits (109), Expect = 0.002
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 347 LKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANL 403
++ K G R N+ GKRV+FS R+V +PDP ++ EVG+P VAK L + + N+
Sbjct: 306 IEKKIGLIRSNILGKRVNFSGRSVATPDPLIKSGEVGLPKIVAKSLLIHDYLSSINI 362
>UniRef50_Q1L5Y0 Cluster: DNA-directed RNA polymerase; n=1;
Anthoceros sp. JL-2005|Rep: DNA-directed RNA polymerase
- Anthoceros sp. JL-2005
Length = 397
Score = 77.8 bits (183), Expect = 2e-12
Identities = 113/446 (25%), Positives = 185/446 (41%), Gaps = 82/446 (18%)
Query: 497 PYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELL 556
PYNADFDGD ++ +PQ+ + E LM ++EQ L+ P+ G+ +
Sbjct: 1 PYNADFDGDCFSVFVPQSLPSIVECHELM-------------TVEQ---QLINPQCGQPI 44
Query: 557 IAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIK-PR-KLWT 614
++ TQD + G +L+ Q D F T+ LA LL + PAI K P+ WT
Sbjct: 45 VSLTQDTLLGAHLLVQGDVFLTRDYVGTLA--LLGSSKVAI------PAIYKSPQGPRWT 96
Query: 615 GKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGS 674
GKQ+F + + P L+ +G G D + D ++ S D S +
Sbjct: 97 GKQVFGMTLPP--------TLKYQG----GGVD--IVDGEIL--------DSDDGSKWLN 134
Query: 675 GTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIID--VTPG---KKLIEA 729
+ + + + + G + + + MA++++ RGFS G+ D V P K +++
Sbjct: 135 SSVTGLVKAIYTEAGPAVTLSHLDAIQSMANWWLSQRGFSVGLSDFMVAPDSTRKTMLKE 194
Query: 730 KNKLLESG--YSKCDGYI----LEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKA 783
L+ Y+ + I + K L + T A + L S+ ++
Sbjct: 195 IGDQLDMAITYASREQLISDPFIPRSKRNLNVKSNDTTFTKRSAAKVKALQSLGVAKFQS 254
Query: 784 CF---------RELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRV-------P 827
F R + P N+ L M ++GSKGS + Q C+G G V P
Sbjct: 255 LFSRRIEYVIMRHIRPDNSLLAMVRAGSKGSMGKLVQQAGCLGLHLHKGDEVLPCRLGRP 314
Query: 828 NGFEDRSLPHFERHSKIPA---ARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAE 884
E +SL + +P A G + S GL P EF+ M R ++
Sbjct: 315 FTTEGQSLKFSVQ--DLPGHWEATGLIRRSLVDGLRPKEFYVQAMCSRSSTPSYGLELPN 372
Query: 885 TGYLQRRLVKSLEDLVLQYDMTVRNA 910
+ + L+ + D+ L YD TVRN+
Sbjct: 373 K--IFKSLMLFMRDMYLAYDGTVRNS 396
>UniRef50_P07392 Cluster: DNA-directed RNA polymerase 147 kDa
polypeptide; n=62; Poxviridae|Rep: DNA-directed RNA
polymerase 147 kDa polypeptide - Vaccinia virus (strain
Western Reserve / WR) (VACV)
Length = 1287
Score = 77.4 bits (182), Expect = 2e-12
Identities = 59/256 (23%), Positives = 121/256 (47%), Gaps = 14/256 (5%)
Query: 656 IIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSF 715
++++ E++ +D + + + S+ +L + + + + + Y+ GF
Sbjct: 517 LLKDGEIIANDVDSNFVVAMRHLSLAGLLSDHKSNVEGINFIIKSSYVFKRYLSIYGFGV 576
Query: 716 GIIDVTPGKKL---IEAKN----KLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAV 768
D+ P +EA N +L++ Y+K Y+ ++ G + + +E+
Sbjct: 577 TFKDLRPNSTFTNKLEAINVEKIELIKEAYAK---YLNDVRDGKIVPLSKALEADYVES- 632
Query: 769 MLSELSSIRELAAKACFREL---HPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKR 825
MLS L+++ + R+ P N L MA++G K + + ++ GQQ ++G+
Sbjct: 633 MLSNLTNLNIREIEEHMRQTLIDDPDNNLLKMAKAGYKVNPTELMYILGTYGQQRIDGEP 692
Query: 826 VPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAET 885
R LP++ SK P RG++ NS GLT ++++F + R D +T+ T
Sbjct: 693 AETRVLGRVLPYYLPDSKDPEGRGYILNSLTKGLTGSQYYFSMLVARSQSTDIVCETSRT 752
Query: 886 GYLQRRLVKSLEDLVL 901
G L R+++K +ED+V+
Sbjct: 753 GTLARKIIKKMEDMVV 768
Score = 76.6 bits (180), Expect = 4e-12
Identities = 69/278 (24%), Positives = 123/278 (44%), Gaps = 25/278 (8%)
Query: 249 PEDLILTR-LPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCEL 307
P +L T P+PPL IRP++ I D + + +E+ + +I ++ ++
Sbjct: 186 PANLFYTDYFPIPPLIIRPAISFWI------DSIPKETNELTYLLGMIVKNCNLNADEQV 239
Query: 308 IQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSS 367
IQ+ ++ I++ S I L+ GK R + +R D ++
Sbjct: 240 IQKA--VIEYDDIKIISNNTSSINLSYITS-----------GKNNMIRSYIVARRKDQTA 286
Query: 368 RTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRG 427
R+VI P ++ + EVG+P ++ LT V + +++L+ + + +
Sbjct: 287 RSVIGPSTSITVNEVGMPAYIRNTLTEKIFVNAFTVDKVKQLLASNQ-----VKFYFNKR 341
Query: 428 LKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRT 487
L ++ G K L GD VE + + ++F RQPSLH+ +++ + T
Sbjct: 342 LNQLTRIRQGKFIKNKIHLLPGDWVEVAVQEYTSIIFGRQPSLHRYNVIASSIRATEGDT 401
Query: 488 FRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILM 525
+ + + NADFDGDE M L Q +A E ILM
Sbjct: 402 IKISPGIANSQNADFDGDEEWMILEQNPKAVIEQSILM 439
Score = 37.1 bits (82), Expect = 2.9
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 55 VLDRRMGTNQKDANCETCGLGLAECVGHFGYIQL-TLPVFHVGYFRAIITILQTICKECA 113
V D R+G A C+TCG EC GH+G + + + + II +L IC C
Sbjct: 36 VKDGRLGA-MDGALCKTCGKTELECFGHWGKVSIYKTHIVKPEFISEIIRLLNHICIHCG 94
Query: 114 KVMLPESLKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKC 156
+ E K ++ LK K + KK+ S+C
Sbjct: 95 LLRSREPYSDDINLKELSGHALRRLKD--KILSKKKSCWNSEC 135
>UniRef50_Q74MX8 Cluster: NEQ427; n=1; Nanoarchaeum equitans|Rep:
NEQ427 - Nanoarchaeum equitans
Length = 374
Score = 76.2 bits (179), Expect = 5e-12
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 1024 RFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKE 1083
+ L+ KY +I+P +G + AQS GEP TQM L FHFAGV+ + + G+PR+ E
Sbjct: 28 QLLKKLEEKYLNSLIDPQEPIGIITAQSFGEPATQMLLNAFHFAGVSELQLVTGLPRLIE 87
Query: 1084 IINASRNISTPIITAELMQPYDQEFARRVKGRICTSKL 1121
I+NA + + P +T L + D++ A + ++ KL
Sbjct: 88 ILNAKKKPTIPSMTIYL-EKNDEKLAEELVNKLIEVKL 124
>UniRef50_Q2N100 Cluster: RNA polymerase I large subunit; n=1;
Aphrocallistes vastus|Rep: RNA polymerase I large
subunit - Aphrocallistes vastus
Length = 267
Score = 75.8 bits (178), Expect = 7e-12
Identities = 33/55 (60%), Positives = 44/55 (80%)
Query: 872 REGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDP 926
REGL+DTAVKT+ +GYLQR L+K LE + + YD+TVR++ G V+QF YG DG+ P
Sbjct: 1 REGLIDTAVKTSRSGYLQRCLIKHLEGIKVCYDLTVRDSDGSVIQFLYGEDGICP 55
Score = 44.4 bits (100), Expect = 0.019
Identities = 22/36 (61%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 1027 RVCHH-KYQRGVIEPGTAVGALAAQSIGEPGTQMTL 1061
R C KY + +PG VG LAAQSIGEP TQMTL
Sbjct: 232 RTCFELKYLSSLCQPGDPVGILAAQSIGEPSTQMTL 267
>UniRef50_A7AXE4 Cluster: RpoC1; n=1; Babesia bovis|Rep: RpoC1 -
Babesia bovis
Length = 567
Score = 74.9 bits (176), Expect = 1e-11
Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 17/216 (7%)
Query: 343 LVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAK--ILTYPERVFP 400
+ RL GK G FR L G RVD S R+VI P P+L I VG+P ++ LTY +
Sbjct: 298 IYNRLHGKYGLFRQKLLGFRVDCSGRSVIVPGPDLHISYVGLPSNMLHKFSLTYKDYE-D 356
Query: 401 ANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGD 460
N + LR+ + + + KK K NR L C D+ + + +D
Sbjct: 357 ENKKKLRKKIKKFRRSILKLYDPNLKTISRKKARKLSNRCL----LSC-DLFD-NTIDNT 410
Query: 461 VVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAE 520
V++ NR P+LHK++ + R +F C YNADFDGD+M + + + E
Sbjct: 411 VIV-NRAPTLHKMNTQSFHPLMAEGRAVKFTPICCAGYNADFDGDQMGVFSIIFKNSLIE 469
Query: 521 ALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELL 556
A +L +I + NK N+ G LL
Sbjct: 470 AQLL-------TRPMINLYSPTNKKNIFNLTQGALL 498
>UniRef50_Q8KTP7 Cluster: DNA-directed RNA polymerase; n=1;
Candidatus Tremblaya princeps|Rep: DNA-directed RNA
polymerase - Tremblaya princeps
Length = 1319
Score = 72.1 bits (169), Expect = 8e-11
Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 454 RHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQ 513
RH + VL NR P+LH+LS+ + R N VC P+NADFDGD+M +H+P
Sbjct: 412 RHAIRHHPVLLNRAPTLHRLSVQAFYPTLVEGLAIRLNPLVCAPFNADFDGDQMAVHVPL 471
Query: 514 TEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLIT 571
+ EA EA +L+ N NL+ P +G A TQD + G Y +T
Sbjct: 472 SVEAATEARMLLLPCN----------------NLLLPASGYPASAPTQDMVLGIYYLT 513
Score = 67.7 bits (158), Expect = 2e-09
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 5/150 (3%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCE 306
+RPE +ILT +PV P +RP + S + + D L ++ N+ + R +A
Sbjct: 235 ARPEWMILTVIPVLPAGLRPMIRSAGRDAASSD-LNDLYRGVINCNNRLRRLIALRAPQS 293
Query: 307 LIQEDWDYLQLHAA-LYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDF 365
++ + D LQ L + G A + +P R L + L+GK GRFR ++ GKRVD+
Sbjct: 294 IVAAEHDLLQRSVDDLMDGTARQGN--AREHCRP-RSLSEALRGKTGRFRQHMLGKRVDY 350
Query: 366 SSRTVISPDPNLQIQEVGVPVHVAKILTYP 395
S R+VI P+L + + G+P+ +A L P
Sbjct: 351 SGRSVIVVGPDLGMHQCGIPICMALELFRP 380
Score = 54.0 bits (124), Expect = 2e-05
Identities = 22/34 (64%), Positives = 28/34 (82%)
Query: 1038 IEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVAS 1071
+ G AVG +AAQSIGEPGTQ+T++TFH G+AS
Sbjct: 897 VNMGAAVGVVAAQSIGEPGTQLTMRTFHIGGIAS 930
Score = 52.0 bits (119), Expect = 9e-05
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 851 VENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL 901
V +SF GL E+ G R+GL DTA++TA++GYL RRLV + D+++
Sbjct: 748 VTSSFREGLNAVEYAMSAHGARKGLADTALRTADSGYLTRRLVDASHDVII 798
>UniRef50_Q9MTD4 Cluster: DNA-directed RNA polymerase; n=3;
Sarcocystidae|Rep: DNA-directed RNA polymerase -
Toxoplasma gondii
Length = 565
Score = 72.1 bits (169), Expect = 8e-11
Identities = 77/279 (27%), Positives = 129/279 (46%), Gaps = 38/279 (13%)
Query: 249 PEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLI-NDVIARHLASAGKCEL 307
PE L LT LPV P +RP V IK L +I+++ N+ + R
Sbjct: 223 PEWLFLTVLPVIPAGLRPLV--KIKQKLFVSSLINNLYKIIILRNNRLKRWKILRHSIPF 280
Query: 308 IQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSS 367
E D L ++ ++ I KP L+GK+G+FR + GKR+DFS
Sbjct: 281 FFELIDKQLLQCSI---DDLLNIKT-----KPSSSNCFTLQGKKGKFRQYILGKRIDFSG 332
Query: 368 RTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRG 427
R+VI P +L + +G+P++++ L P L +L++ + + A+Y+ Q
Sbjct: 333 RSVILPGSDLIYKNIGLPLNLSLDLFK-----PMLLNFLKKDLSIITLLR--ASYITQYN 385
Query: 428 -LKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQR 486
+ K+ LK+ L+ ++VL NR P+LH+++I + +
Sbjct: 386 PILLKRILKF-------------------LITKEIVLLNRAPTLHRMNIQAFKPYLIEFE 426
Query: 487 TFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILM 525
+ C+ +NADFDGD+M + L ++ A+ EA LM
Sbjct: 427 GIKLYPVGCSSFNADFDGDQMGLFLILSKIAKQEAKKLM 465
>UniRef50_Q8TXI9 Cluster: DNA-directed RNA polymerase largest subunit,
the N-terminal part; n=1; Methanopyrus kandleri|Rep:
DNA-directed RNA polymerase largest subunit, the
N-terminal part - Methanopyrus kandleri
Length = 429
Score = 72.1 bits (169), Expect = 8e-11
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 1024 RFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKE 1083
+ LR Y+ IE G AVG LAAQS+ EP TQMT++TFH AGVA ++IT G+P ++
Sbjct: 46 KVLRALVRNYKCRQIERGDAVGVLAAQSMCEPATQMTMRTFHLAGVAEIDITTGMPALER 105
Query: 1084 IINAS-RNISTPIITAELMQPY--DQEFARRVKGRI 1116
+++ T +I L +PY D+E A V +I
Sbjct: 106 VLSLPYHGPPTWVIELRLKEPYRSDREKAEGVARKI 141
>UniRef50_Q98Q24 Cluster: DNA-directed RNA polymerase subunit beta';
n=5; Mycoplasma|Rep: DNA-directed RNA polymerase subunit
beta' - Mycoplasma pulmonis
Length = 1426
Score = 69.7 bits (163), Expect = 4e-10
Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 248 RPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCEL 307
+P +++ LPV P +RP V D + D+ I++ N+ + + + +
Sbjct: 306 KPTSMLIYNLPVIPAELRPLVQLD-GGRHSTSDINELYRRIIIRNNRLRKWIELNAPTLI 364
Query: 308 IQEDWDYLQLHA-ALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 366
Q + +Q AL NS+ P+ + + + + L GK+GRFR NL GKRVD+S
Sbjct: 365 TQNELRMIQEAVDALIDNSKKKPKPVTSKDNRNLKSISDALTGKKGRFRQNLLGKRVDYS 424
Query: 367 SRTVISPDPNLQIQEVGVPVHVAKILTYP 395
R+VI P L++ +VG+P +A L P
Sbjct: 425 GRSVIVVGPELKMNQVGIPREMAAKLFEP 453
Score = 66.1 bits (154), Expect = 5e-09
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 16/116 (13%)
Query: 456 LVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTE 515
++ G VL NR P+LH+LSI + + + + V T +NADFDGD+M +H+P ++
Sbjct: 489 VIQGRPVLLNRAPTLHRLSIQAFEPVLIRGKAIKLHPLVTTAFNADFDGDQMAVHVPISD 548
Query: 516 EARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLIT 571
EA EA L+ ++ N++ P++GE +I +QD I G Y +T
Sbjct: 549 EAVREAKELLFANR----------------NILGPKDGEPIINPSQDMILGIYYLT 588
Score = 62.9 bits (146), Expect = 5e-08
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 8/122 (6%)
Query: 789 HPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAAR 848
+P N IM SG++ + N Q+ G N K + + E+ + +IP
Sbjct: 899 NPLNPIFIMMNSGARSNMANYVQLAGIRGLMTNNTKILKSDAENERV--VRSTVEIP--- 953
Query: 849 GFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVL-QYDMTV 907
V++SF GLT EF+ T G R+GL DTA+ TA++GYL RRLV + +V+ + D
Sbjct: 954 --VKSSFLDGLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQGIVVTEKDCAT 1011
Query: 908 RN 909
+N
Sbjct: 1012 QN 1013
Score = 60.5 bits (140), Expect = 3e-07
Identities = 29/55 (52%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASM-NITQGVPRVKEIINASRN 1090
++ G AVG A+QSIGEPGTQ+T++TFH GVA + +IT G R+ E+I+A R+
Sbjct: 1105 IVSIGEAVGITASQSIGEPGTQLTMRTFHSGGVAGVEDITGGFGRLTELIDAYRS 1159
>UniRef50_Q2N0X2 Cluster: RNA polymerase III large subunit; n=1;
Monosiga brevicollis|Rep: RNA polymerase III large
subunit - Monosiga brevicollis
Length = 233
Score = 69.3 bits (162), Expect = 6e-10
Identities = 32/53 (60%), Positives = 43/53 (81%)
Query: 1069 VASMNITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRICTSKL 1121
VA+MN+T GVPR+KEIINA++NISTP+ITA+L ++ FAR+VK R+ T L
Sbjct: 1 VAAMNVTLGVPRIKEIINAAKNISTPVITAKLENDREESFARQVKARLETLTL 53
>UniRef50_P23580 Cluster: DNA-directed RNA polymerase subunit beta';
n=2; Euglena|Rep: DNA-directed RNA polymerase subunit
beta' - Euglena gracilis
Length = 586
Score = 69.3 bits (162), Expect = 6e-10
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 5/151 (3%)
Query: 247 SRPEDLILTRLPVPPLCIRPSVVSDIKAGTN-EDDLTMKQSEILLINDVIARHLASAGKC 305
++P +++ LPV P IRP V ++ GT DL +I+ N+ I +
Sbjct: 220 TKPIWIMIHFLPVLPPDIRPVV--KLQDGTVIMTDLNFLYIDIIYGNNKIIKLRKFLLPE 277
Query: 306 ELIQEDWDYLQLHAALYINSE-MSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVD 364
E + + LQ+ +IN+E +S P KK + + + LKGK+GRFR NL GK VD
Sbjct: 278 EFMLNEKRSLQVKVDAFINNENISENPYEQNDKKL-KSITEGLKGKKGRFRENLLGKTVD 336
Query: 365 FSSRTVISPDPNLQIQEVGVPVHVAKILTYP 395
+S R+VI +P L + E G+P+ +A L +P
Sbjct: 337 YSGRSVIVVEPKLLLHECGMPLDIALELFHP 367
Score = 65.7 bits (153), Expect = 7e-09
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 16/110 (14%)
Query: 462 VLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEA 521
+L NR P+LH+L I + KV ++ + VC+ +NADFDGD+M +H+P + ++ AEA
Sbjct: 409 ILLNRAPTLHRLGIQSFQPKVTFEKAILLHPLVCSAFNADFDGDQMGIHIPLSLKSLAEA 468
Query: 522 LILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLIT 571
++ S N N V P NG I +QD + G Y +T
Sbjct: 469 RSMLISIN----------------NCVLPANGLPSILPSQDMVLGCYYVT 502
>UniRef50_Q0P3M4 Cluster: DNA-directed RNA polymerase; n=1;
Ostreococcus tauri|Rep: DNA-directed RNA polymerase -
Ostreococcus tauri
Length = 1011
Score = 67.3 bits (157), Expect = 2e-09
Identities = 69/236 (29%), Positives = 106/236 (44%), Gaps = 36/236 (15%)
Query: 671 TLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVT--PGKK--L 726
T+ G + +L ++G E R + +L M +Y + G S GI D++ P K L
Sbjct: 9 TVDKGEMKRLIKWVLLNYGTEKTTRLIDKLKTMGFHYATHAGISLGIDDLSIPPIKSAFL 68
Query: 727 IEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFR 786
+ A+N + E+ G I +++ T +TL+ ++ FR
Sbjct: 69 LNAENDIYENDLRLKRGQITSVQRLEKALDIWNTTNDTLKTEVVKY------------FR 116
Query: 787 ELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPA 846
N +MA SG++G NISQ+ VG + L P G + P
Sbjct: 117 STDIFNPVYMMAFSGARG---NISQVRQLVGMRGLMAD--PQG----------QILDFPI 161
Query: 847 ARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
R F E GLT TE+ G R+GLVDTA++TA +GYL RRLV + +++Q
Sbjct: 162 RRNFRE-----GLTVTEYMISCYGARKGLVDTALRTASSGYLTRRLVDVAQSVIIQ 212
Score = 56.0 bits (129), Expect = 6e-06
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 1024 RFLRVCHHKY-----QRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGV 1078
RF VC Y Q+ +++ G AVG LAAQSIGEPGTQ+T++TFH GV + T+ V
Sbjct: 283 RFHAVCQLCYGWNLAQQKLVQLGEAVGVLAAQSIGEPGTQLTMRTFHTGGVFAGEATEKV 342
>UniRef50_Q4G3A5 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Emiliania huxleyi|Rep: DNA-directed RNA
polymerase subunit beta'' - Emiliania huxleyi
Length = 1267
Score = 66.9 bits (156), Expect = 3e-09
Identities = 46/118 (38%), Positives = 67/118 (56%), Gaps = 20/118 (16%)
Query: 785 FRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKI 844
FRE P N IMA SG++G NISQ+ VG + L P G + LP
Sbjct: 121 FRESDPLNPLYIMAFSGARG---NISQVRQLVGMRGLMSN--PQG-QIIDLP-------- 166
Query: 845 PAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
++++F GLT TE+ + G R+GLVDTA++TA++GYL RRLV +D++++
Sbjct: 167 ------IKSNFREGLTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVAQDIIVR 218
Score = 55.6 bits (128), Expect = 8e-06
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 1017 LTLTQLVRFLRVCH--HKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNI 1074
LT T + C+ H +++ G AVG +AAQSIGEPGTQ+T++TFH GV S ++
Sbjct: 288 LTCTSTRSVCQNCYGWHLSHSKLVDLGEAVGIVAAQSIGEPGTQLTMRTFHTGGVFSGDL 347
Query: 1075 TQGV 1078
T+ V
Sbjct: 348 TRQV 351
>UniRef50_Q110H3 Cluster: DNA-directed RNA polymerase, beta''
subunit; n=2; Oscillatoriales|Rep: DNA-directed RNA
polymerase, beta'' subunit - Trichodesmium erythraeum
(strain IMS101)
Length = 1415
Score = 66.5 bits (155), Expect = 4e-09
Identities = 59/160 (36%), Positives = 81/160 (50%), Gaps = 26/160 (16%)
Query: 785 FRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKI 844
FR P N+ +MA SG++G NISQ+ VG + L P G E LP
Sbjct: 113 FRSTDPLNSVYMMAFSGARG---NISQVRQLVGMRGLMAD--PQG-EIIDLP-------- 158
Query: 845 PAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYD 904
++ +F GLT TE+ + G R+GLVDTA++TA++GYL RRLV +D++++
Sbjct: 159 ------IKTNFREGLTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVR-- 210
Query: 905 MTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLAD 944
T V DG D + KDR L RVLAD
Sbjct: 211 -EADCGTKRGVMVTSMKDG-DRVLIPVKDRL--LGRVLAD 246
Score = 51.6 bits (118), Expect = 1e-04
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNIT-QGVPRVKEIINASRNIST 1093
+++ G A+G +AAQSIGEPGTQ+T++TFH GV + + Q V ++ N+ T
Sbjct: 314 MVDMGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVARQFVASFGGVVKYPSNVRT 371
>UniRef50_P22705 Cluster: DNA-directed RNA polymerase subunit beta';
n=7; cellular organisms|Rep: DNA-directed RNA polymerase
subunit beta' - Anabaena sp. (strain PCC 7120)
Length = 1355
Score = 65.7 bits (153), Expect = 7e-09
Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 20/118 (16%)
Query: 785 FRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKI 844
F++ +P N+ +MA SG++G NISQ+ VG + L P G E LP
Sbjct: 118 FKQTNPLNSVYMMAFSGARG---NISQVRQLVGMRGLMAD--PQG-EIIDLP-------- 163
Query: 845 PAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
++ +F GLT TE+ + G R+GLVDTA++TA++GYL RRLV +D++++
Sbjct: 164 ------IKTNFREGLTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIR 215
Score = 54.4 bits (125), Expect = 2e-05
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 1028 VCHHKY-----QRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGV 1078
VC H Y +++ G AVG +AAQSIGEPGTQ+T++TFH GV + + Q V
Sbjct: 299 VCQHCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQQV 354
>UniRef50_Q7YN58 Cluster: DNA-directed RNA polymerase; n=1; Eimeria
tenella|Rep: DNA-directed RNA polymerase - Eimeria
tenella
Length = 571
Score = 64.5 bits (150), Expect = 2e-08
Identities = 64/274 (23%), Positives = 122/274 (44%), Gaps = 30/274 (10%)
Query: 248 RPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCEL 307
+P+ ++L LPV P +RP + + L I++IN+ + + K +
Sbjct: 227 QPQWIMLDILPVLPSGLRPLIQLN-NNNFGSSSLNELYRIIIIINNKLKQWQLLRRKFPI 285
Query: 308 IQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSS 367
E L A+ I E + KK L L+GK FR + GKR+DFS
Sbjct: 286 SFEITAKRNLQQAIDILIEDN----YKNKKKNLISLSSHLQGKFNYFRQYILGKRIDFSG 341
Query: 368 RTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRG 427
R+VI P L ++G+ +++ ++ + ++ N + Y+
Sbjct: 342 RSVIVSGPALIFNKIGISTNLS-------------IELFKPIILN---ILKKNKYINTL- 384
Query: 428 LKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRT 487
L+ +++Y I + L + + + ++++FNR P+LH+++I + +
Sbjct: 385 LRASYFIEYS--PIILKRLL------KFIFNKEIIMFNRAPTLHRMNIQTFKPLLTENEI 436
Query: 488 FRFNECVCTPYNADFDGDEMNMHLPQTEEARAEA 521
+ C+ +NADFDGD+M + L ++ A+ EA
Sbjct: 437 IKLFPLACSGFNADFDGDQMGIFLILSKSAKKEA 470
>UniRef50_O78483 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; Cryptomonadaceae|Rep: DNA-directed RNA
polymerase subunit beta'' - Guillardia theta
(Cryptomonas phi)
Length = 1286
Score = 64.1 bits (149), Expect = 2e-08
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 20/118 (16%)
Query: 785 FRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKI 844
F++ P N IMA SG++G NISQ+ VG + L P G + LP
Sbjct: 124 FKQNDPLNPIYIMAFSGARG---NISQVRQLVGMRGLMAD--PQG-QIIDLP-------- 169
Query: 845 PAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
++++F GLT TE+ + G R+GLVDTA++TA++GYL RRLV +D++++
Sbjct: 170 ------IKSNFREGLTVTEYLISSYGARKGLVDTALRTADSGYLTRRLVDVAQDIIIR 221
Score = 52.4 bits (120), Expect = 7e-05
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGV-PRVKEIINASRNISTPI 1095
+++ G AVG +AAQSIGEPGTQ+T++TFH GV + + + + II +N+ I
Sbjct: 319 LVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGELAEQIRAPFNGIIRYPKNLKIRI 378
Query: 1096 I 1096
I
Sbjct: 379 I 379
>UniRef50_Q5S1Y5 Cluster: DNA-directed RNA polymerase; n=1;
Agaricostilbum hyphaenes|Rep: DNA-directed RNA
polymerase - Agaricostilbum hyphaenes
Length = 254
Score = 63.7 bits (148), Expect = 3e-08
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 201 AKESNKEVAAMINSGLVKEMSPLEV-LNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPV 259
A++++ EV L K P L +FR++ +++ L+G++V +RPE +ILT LPV
Sbjct: 138 AEDADGEVDKKGPKTLEKTPLPASAALLIFRKMVVDELKLMGISVDEARPEWMILTVLPV 197
Query: 260 PPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQ 316
PP +RPSV D EDDLT K + I+ IN + R ++ E LQ
Sbjct: 198 PPPPVRPSVAMDGGVMRGEDDLTYKLATIIRINSGLRRLEGEGAPMHVLTESESLLQ 254
>UniRef50_Q7VA30 Cluster: DNA-directed RNA polymerase subunit beta';
n=33; root|Rep: DNA-directed RNA polymerase subunit
beta' - Prochlorococcus marinus
Length = 1367
Score = 63.7 bits (148), Expect = 3e-08
Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 20/123 (16%)
Query: 780 AAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFE 839
A K F P N+ +MA SG++G N+SQ+ VG + L P G E LP
Sbjct: 144 AVKKNFNHNDPLNSVWMMANSGARG---NMSQVRQLVGMRGLMAN--PQG-EIIDLP--- 194
Query: 840 RHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDL 899
+ +F GLT TE+ + G R+GLVDTA++TA++GYL RRLV +D+
Sbjct: 195 -----------IRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQDV 243
Query: 900 VLQ 902
+++
Sbjct: 244 IVR 246
Score = 51.6 bits (118), Expect = 1e-04
Identities = 21/35 (60%), Positives = 30/35 (85%)
Query: 1037 VIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVAS 1071
+++ G AVG +AAQSIGEPGTQ+T++TFH GV++
Sbjct: 337 LVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVST 371
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,258,186
Number of Sequences: 1657284
Number of extensions: 54944384
Number of successful extensions: 121190
Number of sequences better than 10.0: 321
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 119095
Number of HSP's gapped (non-prelim): 1354
length of query: 1191
length of database: 575,637,011
effective HSP length: 109
effective length of query: 1082
effective length of database: 394,993,055
effective search space: 427382485510
effective search space used: 427382485510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 78 (35.5 bits)
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