Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000760-TA|BGIBMGA000760-PA|IPR002345|Lipocalin,
IPR006592|RNA polymerase I subunit A, N-terminal, IPR007080|RNA
polymerase Rpb1, domain 1, IPR000722|RNA polymerase, alpha subunit,
IPR007066|RNA polymerase Rpb1, domain 3, IPR007083|RNA polymerase
Rpb1, domain 4, IPR007081|RNA polymerase Rpb1, domain 5
(1191 letters)
Database: tribolium
317 sequences; 114,650 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin pr... 27 0.58
AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin pr... 26 1.3
AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin pr... 26 1.3
AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin pr... 26 1.8
>AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin
protein.
Length = 685
Score = 27.5 bits (58), Expect = 0.58
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 889 QRRLV---KSLED--LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDL--ARV 941
Q+RL+ K LED + Y++ + V++ R G T + GK +++ +
Sbjct: 40 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKT-LTGKTITLEVEPSDT 98
Query: 942 LADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
+ +V+AK QDK P D ++ A ++ L+D +T +D
Sbjct: 99 IENVKAKIQDKEGIPPDQQRLIFAGKQ---LEDGRTLSD 134
Score = 27.5 bits (58), Expect = 0.58
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 889 QRRLV---KSLED--LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDL--ARV 941
Q+RL+ K LED + Y++ + V++ R G T + GK +++ +
Sbjct: 116 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKT-LTGKTITLEVEPSDT 174
Query: 942 LADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
+ +V+AK QDK P D ++ A ++ L+D +T +D
Sbjct: 175 IENVKAKIQDKEGIPPDQQRLIFAGKQ---LEDGRTLSD 210
Score = 27.5 bits (58), Expect = 0.58
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 889 QRRLV---KSLED--LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDL--ARV 941
Q+RL+ K LED + Y++ + V++ R G T + GK +++ +
Sbjct: 192 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKT-LTGKTITLEVEPSDT 250
Query: 942 LADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
+ +V+AK QDK P D ++ A ++ L+D +T +D
Sbjct: 251 IENVKAKIQDKEGIPPDQQRLIFAGKQ---LEDGRTLSD 286
Score = 27.5 bits (58), Expect = 0.58
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 889 QRRLV---KSLED--LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDL--ARV 941
Q+RL+ K LED + Y++ + V++ R G T + GK +++ +
Sbjct: 268 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKT-LTGKTITLEVEPSDT 326
Query: 942 LADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
+ +V+AK QDK P D ++ A ++ L+D +T +D
Sbjct: 327 IENVKAKIQDKEGIPPDQQRLIFAGKQ---LEDGRTLSD 362
Score = 27.5 bits (58), Expect = 0.58
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 889 QRRLV---KSLED--LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDL--ARV 941
Q+RL+ K LED + Y++ + V++ R G T + GK +++ +
Sbjct: 496 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKT-LTGKTITLEVEPSDT 554
Query: 942 LADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
+ +V+AK QDK P D ++ A ++ L+D +T +D
Sbjct: 555 IENVKAKIQDKEGIPPDQQRLIFAGKQ---LEDGRTLSD 590
Score = 27.5 bits (58), Expect = 0.58
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 889 QRRLV---KSLED--LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDL--ARV 941
Q+RL+ K LED + Y++ + V++ R G T + GK +++ +
Sbjct: 572 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKT-LTGKTITLEVEPSDT 630
Query: 942 LADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
+ +V+AK QDK P D ++ A ++ L+D +T +D
Sbjct: 631 IENVKAKIQDKEGIPPDQQRLIFAGKQ---LEDGRTLSD 666
Score = 26.2 bits (55), Expect = 1.3
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 936 VDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
V+ + + +V+AK QDK P D ++ A ++ L+D +T +D
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ---LEDGRTLSD 58
Score = 26.2 bits (55), Expect = 1.3
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 936 VDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
V+ + + +V+AK QDK P D ++ A ++ L+D +T +D
Sbjct: 473 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ---LEDGRTLSD 514
Score = 25.8 bits (54), Expect = 1.8
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 889 QRRLV---KSLED--LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDL--ARV 941
Q+RL+ K LED + Y++ + V++ R G T + GK +++ +
Sbjct: 344 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKT-LTGKTITLEVEPSDT 402
Query: 942 LADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
+ +V+AK QDK P D + A ++ L+D +T +D
Sbjct: 403 IENVKAKIQDKEGIPPDQQRSIFAGKQ---LEDGRTLSD 438
>AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin
protein.
Length = 76
Score = 26.2 bits (55), Expect = 1.3
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 936 VDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
V+ + + +V+AK QDK P D ++ A ++ L+D +T +D
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ---LEDGRTLSD 58
>AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin
protein.
Length = 64
Score = 26.2 bits (55), Expect = 1.3
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 936 VDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
V+ + + +V+AK QDK P D ++ A ++ L+D +T +D
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ---LEDGRTLSD 58
>AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin
protein.
Length = 112
Score = 25.8 bits (54), Expect = 1.8
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 889 QRRLV---KSLED--LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDL--ARV 941
Q+RL+ K LED + Y++ + V++ R G T + GK +++ +
Sbjct: 12 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKT-LTGKTITLEVEPSDT 70
Query: 942 LADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
+ +V+AK QDK P D + A ++ L+D +T +D
Sbjct: 71 IENVKAKIQDKEGIPPDQQRSIFAGKQ---LEDGRTLSD 106
Database: tribolium
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 114,650
Number of sequences in database: 317
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 268,427
Number of Sequences: 317
Number of extensions: 11200
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 12
length of query: 1191
length of database: 114,650
effective HSP length: 65
effective length of query: 1126
effective length of database: 94,045
effective search space: 105894670
effective search space used: 105894670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)
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