GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000760-TA|BGIBMGA000760-PA|IPR002345|Lipocalin,
IPR006592|RNA polymerase I subunit A, N-terminal, IPR007080|RNA
polymerase Rpb1, domain 1, IPR000722|RNA polymerase, alpha subunit,
IPR007066|RNA polymerase Rpb1, domain 3, IPR007083|RNA polymerase
Rpb1, domain 4, IPR007081|RNA polymerase Rpb1, domain 5
         (1191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...   993   0.0  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...   630   0.0  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...   411   e-115
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    29   2.9  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    29   2.9  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    28   6.8  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score =  993 bits (2457), Expect = 0.0
 Identities = 479/934 (51%), Positives = 642/934 (68%), Gaps = 29/934 (3%)

Query: 11  VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
           + ++I H+ F ++ P    +   +EV  ++L+     R PA HG LD  MGT+ K  NC 
Sbjct: 9   IPKRIKHLQFGINGPEEFVKDGTVEVSRRDLYTMT-DRSPAEHGALDLHMGTSNKQINCA 67

Query: 71  TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFI 130
           TCG  +A+C+GHFGY++L LPVFH+GYF+A +TILQ ICK+C+ V+L +  K+ + +   
Sbjct: 68  TCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQFLKDLR 127

Query: 131 NPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPI 190
            P +  L +  +   ++   K   +C  C+A+ G+VKK+  G LKI+HE++R  + +   
Sbjct: 128 RPGIDNLRRSQICKRINDHCKKMRRCSKCDAMQGVVKKA--GPLKIIHERFRYVRKSQDD 185

Query: 191 VKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPE 250
            +     F EA ++  E+   ++     +++PL+VLNLF++I   D  LLGM+ +  RPE
Sbjct: 186 EENFRHSFDEALKTIPELKMHLSKAH-DDLNPLKVLNLFKQITPVDCELLGMDPEHGRPE 244

Query: 251 DLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQE 310
           +L+   +P PP+CIRPSV  +    T EDDLT+K +EI+  + +I   L+       + E
Sbjct: 245 NLLWRYVPAPPVCIRPSVAQE--GATTEDDLTVKITEIIWTSSLIRAALSKGTPISNLME 302

Query: 311 DWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTV 370
            W+++QL  A+YINSEM G+  +  P KP RG  QRLKGKQGRFRGNLSGKRVDFS RTV
Sbjct: 303 QWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTV 362

Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKT 430
           ISPDPNL+I +V VP  +AKILT+PERV   N + L+  + NGPDVHPGANYV  R    
Sbjct: 363 ISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVIDRESGF 422

Query: 431 KKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRF 490
           K++L++GNR +IA +LK GD+VERHL D DVVLFNRQPSLHKLSIM H  KV+P RT RF
Sbjct: 423 KRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKVRPWRTLRF 482

Query: 491 NECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTP 550
           NECVC PYNADFDGDEMN+H+PQTEEA+ EAL LMG                 K+NLV+P
Sbjct: 483 NECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGI----------------KNNLVSP 526

Query: 551 RNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPR 610
           RNGE +IAATQDFIT  YL++ +DTF  +     +   ++   DA+  ID+PPPAIIKPR
Sbjct: 527 RNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMM---DASTHIDLPPPAIIKPR 583

Query: 611 KLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNK----DLCVQDSYVIIRNSELVCGS 666
            LWTGKQ+F+++M+PNR  +V  NL+ K ++++  K    ++C +D Y++IRNSE++ G 
Sbjct: 584 CLWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEMCPKDGYLMIRNSEIIAGV 643

Query: 667 MDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKL 726
           +DKS +G G K S+FY++LRD+G   A   + RL++M + ++ NRGFS GI DV PGK L
Sbjct: 644 VDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPGKSL 703

Query: 727 IEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFR 786
              K  L+   Y+  D +I++  KG L+CQPG   E TLEA + S LS +R+   + C  
Sbjct: 704 SSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRDDVGEICMD 763

Query: 787 ELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPA 846
           EL P N+PLIMA  GSKGS IN+SQM+ACVGQQ ++GKRVP+GF+DRSLPHF ++SK P 
Sbjct: 764 ELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKNSKHPL 823

Query: 847 ARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMT 906
           A+GFV NSFY+GLTPTEF FH + GREGLVDTAVKTAETGY+ RRL+KSLEDL   YD T
Sbjct: 824 AKGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYDGT 883

Query: 907 VRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLAR 940
           VR++  +VVQF YG DGLDPTYMEG  + V+  R
Sbjct: 884 VRSSNSDVVQFVYGDDGLDPTYMEGDGQAVEFKR 917



 Score =  132 bits (320), Expect = 2e-31
 Identities = 68/107 (63%), Positives = 80/107 (74%), Gaps = 1/107 (0%)

Query: 1016 RLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNIT 1075
            R+T  QL  F+  C  KY R  +EPGTAVGA+ AQSIGEPGTQMTLKTFHFAGVA+   T
Sbjct: 1019 RVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAQT-T 1077

Query: 1076 QGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRICTSKLK 1122
             GVPR+KEIINA++ ISTPIIT +L+   D+  AR VKGRI  + LK
Sbjct: 1078 LGVPRIKEIINAAKTISTPIITGQLINDRDERSARVVKGRIEKTYLK 1124



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 1118 TSKLKVKPAEVTAVSAWA---IKVTGEPSKSCGWLNMSLQQLGRQLPAVVVKGLPQVSRA 1174
            T KLK+   +VT  +      +  + +   S   +   LQ   R LP VVV G+P ++R+
Sbjct: 1169 TPKLKIPSQQVTVNNTLQQIHVHTSSDGKSSETEVYYRLQTYKRVLPDVVVAGIPTINRS 1228

Query: 1175 VIACDDSSEKPDLPGT 1190
            VI  +    +  + GT
Sbjct: 1229 VINQESGKIELFMEGT 1244


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score =  630 bits (1557), Expect = 0.0
 Identities = 365/919 (39%), Positives = 529/919 (57%), Gaps = 48/919 (5%)

Query: 13  RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
           R++  V F + SP  I+  +  ++       + GQR P   G+LD R+GT  +   C+TC
Sbjct: 14  RRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQR-PRVGGLLDPRLGTIDRQFKCQTC 72

Query: 73  GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
           G  +A+C GHFG+I+L  PVFH+G+   I  IL+ +C  C K+ +  S  K       N 
Sbjct: 73  GETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPK------FND 126

Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVK 192
              Y   KN    V    KT   C +  +        S     + H    A +PT   ++
Sbjct: 127 TQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPT---IR 183

Query: 193 KVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDL 252
           K  +    + +  K+ + +    L   +SPLEV  +F  I  ED+  LG+N + +RP+ +
Sbjct: 184 KDGLRLWGSWKRGKDESDLPEKRL---LSPLEVHTIFTHISSEDLAHLGLNEQYARPDWM 240

Query: 253 ILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDW 312
           I+T LPVPP  +RPS+  D      EDDLT K S+I+  N  + R         ++ E  
Sbjct: 241 IITVLPVPPPSVRPSISVD-GTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYE 299

Query: 313 DYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVI 371
             LQ H A Y+++E++G P A+Q   +P + +  RLKGK+GR RGNL GKRVDFS+RTVI
Sbjct: 300 QLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVI 359

Query: 372 SPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTK 431
           + DPNL + E+GVP  +AK LTYPE V P N+  L+ LV NGPD HPGA Y+  R    +
Sbjct: 360 TGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYII-RDTGER 418

Query: 432 KYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFN 491
             L+Y  R      L+ G  VERH+ DGDVV+FNRQPSLHK+S+M HR +V P  TFR N
Sbjct: 419 IDLRYHKRAGDIP-LRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLN 477

Query: 492 ECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPR 551
             V +PYNADFDGDEMNMH+PQ+EE RAE           +T++ +         +V+P+
Sbjct: 478 LSVTSPYNADFDGDEMNMHVPQSEETRAEI--------QEITMVPK--------QIVSPQ 521

Query: 552 NGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRK 611
           + + ++   QD + G    + RD F T++    +   +L  PD    +  PPP I+KP+ 
Sbjct: 522 SNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNI---MLWVPDWDGIL--PPPVILKPKV 576

Query: 612 LWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKST 671
           LWTGKQI SLI+ P     ++ + +    N T        DS ++I N E++ G +DK T
Sbjct: 577 LWTGKQILSLII-PKGINLIRDDDKQSLSNPT--------DSGMLIENGEIIYGVVDKKT 627

Query: 672 LGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKN 731
           +G+ ++  + + + ++ G E        + R+ +Y++++ GFS GI D       ++   
Sbjct: 628 VGA-SQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVT 686

Query: 732 KLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPT 791
           + ++    +    I + +   L+ +PG T+ E+ EA +   L+  R+ A ++    L  +
Sbjct: 687 RTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDS 746

Query: 792 NAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFV 851
           N    M  +GSKGS INISQM ACVGQQ + GKR+P GF+ R+LPHF +    P +RGF+
Sbjct: 747 NNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFI 806

Query: 852 ENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNAT 911
           ENS+  GLTP EFFFH M GREGL+DTAVKTAETGY+QRRLVK++ED++++YD TVRNA 
Sbjct: 807 ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAM 866

Query: 912 GEVVQFRYGSDGLDPTYME 930
           G+++QF YG DGLD T +E
Sbjct: 867 GDIIQFAYGEDGLDATLVE 885



 Score =  100 bits (239), Expect = 1e-21
 Identities = 44/70 (62%), Positives = 56/70 (80%)

Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNI 1091
            ++Q+ V+ PG  VG LAAQSIGEP TQMTL TFH+AGV+S N+T GVPR+KEI+N ++NI
Sbjct: 1055 RFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNI 1114

Query: 1092 STPIITAELM 1101
             TP +T  LM
Sbjct: 1115 KTPSLTIYLM 1124


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score =  411 bits (1012), Expect = e-115
 Identities = 279/811 (34%), Positives = 426/811 (52%), Gaps = 74/811 (9%)

Query: 342  GLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPA 401
            G+ Q L+ K+G FR ++ GKRV++++R+VISPDPN++  E+GVP   A  LTYPE V   
Sbjct: 463  GIKQILEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLY 522

Query: 402  NLQWLRRLVCNGPDVHPGANYVQQRG--LKTKKYLKYGNREKIAQEL------------- 446
            N   +R  V NGP   PGA+++Q     L +   L    R  +A +L             
Sbjct: 523  NFNEMRNAVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYS 582

Query: 447  -----KCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNA 500
                      V RH+ +GD+++ NRQP+LHK S+M H+A++ P ++T R +   C  YNA
Sbjct: 583  YSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNA 642

Query: 501  DFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAAT 560
            DFDGDEMNMH PQ+  AR+EA  +    NT              S  + P +G+ L    
Sbjct: 643  DFDGDEMNMHFPQSTNARSEAQFIA---NT-------------DSQYLVPTSGDPLRGLI 686

Query: 561  QDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATM--RIDMPPPAIIKPRKLWTGKQI 618
            QD +  G  +T +DTF+T+ E QQL    L   +  M  RI   PPAI +P   WTGKQI
Sbjct: 687  QDHVVMGVWLTCKDTFYTRDEYQQLLFQALKPDETGMYGRIKTLPPAIQRPGIYWTGKQI 746

Query: 619  FSLIM---RPNRR--CEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLG 673
             S ++   +P+ R    +K+  +  GK ++ + +    +  V+  + EL+CG +DKS+ G
Sbjct: 747  ISSVLLNLKPSDRPGLNLKSKAKVPGKYWSPDSE----EGSVLFDDGELLCGILDKSSFG 802

Query: 674  SGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKL 733
            +     + + +   +G + A R +  L+R+ + Y   RGF+  + D+   ++    + +L
Sbjct: 803  ASA-FGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQL 861

Query: 734  LESGYS------------KCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAA 781
            LE+G S              D  I  +     +        + L+A M  +++ +     
Sbjct: 862  LENGKSFGLEAASEYVGLSTDSPIALLNANLEEVYRDDEKLQGLDAAMKGKMNGLTSSII 921

Query: 782  KACFRE----LHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPH 837
              C  +      P N    M  SG+KGSN+N+SQ+   +GQQ L G+RVP     +SLP 
Sbjct: 922  NKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPS 981

Query: 838  FERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLE 897
            F  +     + GF+ + F TG+ P E++FH M GREGL+DTAVKT+ +GYLQR L+K LE
Sbjct: 982  FVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLE 1041

Query: 898  DLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNA-EP 956
             L +QYD TVR++ G +VQF YG D LD T  +   +    A+    +  K + K+    
Sbjct: 1042 GLCVQYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLTQFEFSAKNYKSLIQKYKVKSVLSA 1101

Query: 957  LDGDGIVLAAEETLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYAGCGR----AAL 1012
            +D +     A++ L    +K      K     +L + + + +     Y         A+ 
Sbjct: 1102 VDSETASSYAKKALK-KPYKYDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKLIASK 1160

Query: 1013 QLERL--TLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVA 1070
            +  +L  +L    +F  +   +YQ+ +++PG +VG LA+QSIGEP TQMTL TFHFAG  
Sbjct: 1161 KESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAGFG 1220

Query: 1071 SMNITQGVPRVKEII-NASRNISTPIITAEL 1100
            + N+T G+PR++EII  AS NI TP +T  L
Sbjct: 1221 AKNVTLGIPRLREIIMTASANIQTPTMTLRL 1251



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 11  VGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCE 70
           V  +I  V F +     +++ +  +++  N  L D    P   G+ D  +G   K++ C 
Sbjct: 7   VSSEIKSVKFGIYDVDDVEKISVKQIV--NPVLLDNLNHPTNGGLYDLALGPYLKNSVCA 64

Query: 71  TCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKEC 112
           TC L    C GHFG+I L +P +H  +F  +  +L++ C  C
Sbjct: 65  TCHLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYC 106


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 742 DGYI-LEMEKGTLQCQPGCTMEETLEAVMLSELSSIR-ELAAKACFRELHPTNAPLIMAQ 799
           D YI L    GTL    G T+EE  ++  LS +S++      +    ++HP     I A 
Sbjct: 496 DSYIILSFTNGTLVLSIGETVEEISDSGFLSSVSTLNARQMGRDSLVQIHPKGIRYIRA- 554

Query: 800 SGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFE 839
              + S   + Q +  V Q A+N  ++     +  L +FE
Sbjct: 555 -NKQTSEWKLPQDVYVV-QSAINDMQIVVALSNGELVYFE 592


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)

Query: 310 EDWDYLQLHAALYINSEMSGIPLAMQPKKP 339
           EDWDY+ L     IN++M G+P+   P  P
Sbjct: 801 EDWDYIVLKL---INAKMQGMPINSDPSIP 827


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 884 ETGYL-QRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVL 942
           ETG + +   VK L+  VLQ D     A   ++Q R  S   +  ++  K R ++LAR  
Sbjct: 34  ETGLVSETEDVKRLKQAVLQGDWITAEAAFSIMQLRDESKRKEAQFLLQKQRCLELARSG 93

Query: 943 ADVRAKCQDKNAEPLD 958
           A   A    +N E  D
Sbjct: 94  AICEAIYVLQNFESTD 109


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,278,489
Number of Sequences: 5004
Number of extensions: 221969
Number of successful extensions: 534
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 16
length of query: 1191
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1110
effective length of database: 1,957,154
effective search space: 2172440940
effective search space used: 2172440940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)