Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000760-TA|BGIBMGA000760-PA|IPR002345|Lipocalin,
IPR006592|RNA polymerase I subunit A, N-terminal, IPR007080|RNA
polymerase Rpb1, domain 1, IPR000722|RNA polymerase, alpha subunit,
IPR007066|RNA polymerase Rpb1, domain 3, IPR007083|RNA polymerase
Rpb1, domain 4, IPR007081|RNA polymerase Rpb1, domain 5
(1191 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24568| Best HMM Match : No HMM Matches (HMM E-Value=.) 716 0.0
SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0) 331 2e-90
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 122 2e-27
SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45) 59 2e-08
SB_6124| Best HMM Match : Ribul_P_3_epim (HMM E-Value=9.5) 55 4e-07
SB_21907| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=1.3e-21) 52 4e-06
SB_45256| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.11
SB_33756| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0035) 37 0.11
SB_48008| Best HMM Match : M (HMM E-Value=0.0068) 36 0.26
SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.79
SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1) 31 7.4
SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 7.4
SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 9.7
>SB_24568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 716 bits (1769), Expect = 0.0
Identities = 356/654 (54%), Positives = 451/654 (68%), Gaps = 64/654 (9%)
Query: 1 MPKEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRM 60
M KEQ+RET + +KISH+ F + SP +QQ +H++ I+KNL+ QD R P P+GVLD M
Sbjct: 1 MVKEQFRETGITKKISHINFGMFSPEQMQQYSHLQCISKNLYNQDNTRTPVPYGVLDPHM 60
Query: 61 GTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPES 120
GT KD CETCG GLA+CVGH+GYI L LPVFHVG+FR+ I ILQ +CK C +V+LP +
Sbjct: 61 GTCSKDRMCETCGKGLADCVGHYGYIDLELPVFHVGHFRSTIIILQCVCKNCCRVLLPPA 120
Query: 121 LKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEK 180
KK + P +S L KK +K + +K K S CP CE +NG V+K +G++KIVHEK
Sbjct: 121 EKKQFLDTLKKPNISSLAKKGMKKKIVEKCKKISHCPYCEDLNGFVRK--VGLMKIVHEK 178
Query: 181 YRA-KKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPL 239
Y+ +K DPI+ F A E+NKE++ ++ +D PL
Sbjct: 179 YKTTRKIVDPIISDFQSSFDVALENNKELSPLLPKA-------------------QDYPL 219
Query: 240 LGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHL 299
L + +S P DLI+ R+ PP+CIRPSV+S++ +G+NEDD+TMK +EI+ +NDVI +H
Sbjct: 220 LMFSPGMSHPHDLIMRRILAPPVCIRPSVISELASGSNEDDVTMKLTEIVFLNDVIRKHR 279
Query: 300 ASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLS 359
+ K ++I PKK RG VQRLKGKQGRFRGNLS
Sbjct: 280 SVGAKVQMIM--------------------------PKKGTRGFVQRLKGKQGRFRGNLS 313
Query: 360 GKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG 419
GKRVDFS RTVISPDPNL+I +V VP+HVAK+LTYPERV +NL+ +++LV NG D HPG
Sbjct: 314 GKRVDFSGRTVISPDPNLRIDQVAVPIHVAKVLTYPERVTQSNLKLMKQLVLNGADQHPG 373
Query: 420 ANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHR 479
AN++QQR TK++LKYGNR+ IA++LK GD VERHL+DGDVVLFNRQPSLHKLSIM H
Sbjct: 374 ANFIQQRETNTKRFLKYGNRKLIAKQLKIGDTVERHLIDGDVVLFNRQPSLHKLSIMAHL 433
Query: 480 AKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVS 539
A V+P RTFRFNECVCTPYNADFDGDEMN+HLPQTEEA+AEAL LMG
Sbjct: 434 ATVRPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALTLMGV------------ 481
Query: 540 LEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRI 599
K+NLVTPRNGE LIAA QDFITG YL+T +D F +S QL A +LAG D + I
Sbjct: 482 ----KNNLVTPRNGEPLIAAIQDFITGAYLLTYKDVFLDRSHIAQLCASILAGKDTGVDI 537
Query: 600 DMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDS 653
++PPPAI KP +LWTGKQ+FS+++RPN + +V+ NL +GK YT +DLCV DS
Sbjct: 538 ELPPPAIHKPCRLWTGKQVFSVLLRPNPKVKVRMNLRARGKQYTSGEDLCVNDS 591
Score = 233 bits (570), Expect = 6e-61
Identities = 126/230 (54%), Positives = 156/230 (67%), Gaps = 11/230 (4%)
Query: 710 NRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVM 769
NRGFS GI DVTPG L++AK LL +GYSKC+ YI E +G LQ QPGC+ E+TLE
Sbjct: 593 NRGFSIGIGDVTPGHGLLQAKEDLLSTGYSKCEDYINEFREGKLQTQPGCSAEDTLEVER 652
Query: 770 LSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNG 829
+S L L R L+ L + + S I AC+ + L+ P
Sbjct: 653 ISVLEG--NLLFPGIPRNLNLLTYCLAVILK--ELSVIRDHAGKACLRE--LHKSNTP-- 704
Query: 830 FEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQ 889
++ +K+PAA+GFV+NSF++GLTPTEFFFHTMGGREGLVDTAVKTAETGY+Q
Sbjct: 705 ---LTMAVCGSKAKLPAAKGFVKNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQ 761
Query: 890 RRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLA 939
RRLVKSLEDL QYD+TVR +TG++VQFRYG DGLDPT MEGKD+P+D +
Sbjct: 762 RRLVKSLEDLSTQYDITVRTSTGDIVQFRYGGDGLDPTDMEGKDKPLDFS 811
Score = 118 bits (283), Expect = 4e-26
Identities = 71/162 (43%), Positives = 93/162 (57%), Gaps = 7/162 (4%)
Query: 961 GIVLAAEETLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYAGCGRAAL--QLERLT 1018
GI+ ++E + DFKT T +F L ++ + + R A+ + R T
Sbjct: 890 GIIESSEFEMCSKDFKTETSDFVENLAKKIEKIHAQYGVVPHRRGKATHPAVVDYVNRCT 949
Query: 1019 LTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFA----GVASMNI 1074
TQL FL +C KY R +EPG+AVGA+ AQSIGEP T + H + ++I
Sbjct: 950 ETQLKLFLSMCREKYLRARMEPGSAVGAICAQSIGEPALP-TYEDVHVGIEEHKLLHVDI 1008
Query: 1075 TQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
T GVPR+KEIINASR ISTPII+A+L DQE AR VKGRI
Sbjct: 1009 TLGVPRIKEIINASRKISTPIISAQLQDDRDQELARAVKGRI 1050
>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
Length = 1596
Score = 331 bits (814), Expect = 2e-90
Identities = 200/534 (37%), Positives = 300/534 (56%), Gaps = 34/534 (6%)
Query: 50 PAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTIC 109
P +G++D R GT + + C+TC + EC GHFG+I+L PVFHVG+ I+ L+ +C
Sbjct: 449 PKLNGLMDPRQGTIDRFSRCQTCAGNMTECPGHFGHIELAKPVFHVGFMTKIVKTLRCVC 508
Query: 110 KECAKVMLPESLKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKS 169
C+K+++ + NP + +L K+ + + C G +
Sbjct: 509 FYCSKLLVDLN----------NPRVKEILSKSHGQPRKRMMHMYDLCKGKNICEGGDEVD 558
Query: 170 SIGILKIVHEKYRAKKPTDPIVKKVLMDFHE-AKESNKEVAAMINSGLVKE--MSPLEVL 226
+ G+L + KK + F + A E E + K+ ++ V
Sbjct: 559 A-GVLAQDNPNEAEKKLNHGGCGRYQPKFRKTALELTAEWKHVNEDANEKKITLTAERVY 617
Query: 227 NLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQS 286
+F+RI DE+ LGM+ K +RP+ +I+T LPVPPL +RPS+V A ++DDLT K +
Sbjct: 618 EIFKRISDEECNALGMDPKNARPDWMIVTVLPVPPLPVRPSIVLSGTA-RSQDDLTHKLA 676
Query: 287 EILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQ 345
+I+ N+ + R+ + +I ED LQ H A ++E+ G+P AMQ +P + + Q
Sbjct: 677 DIVKANNNLRRNELNGAAAHIIAEDTRLLQYHVATLTDNEIPGLPRAMQKSGRPLKSVKQ 736
Query: 346 RLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQW 405
RLK K+GR RGNL GKRVDFS+R VI+PDPNL I +VGVP +A+ LT+PE V P N+
Sbjct: 737 RLKSKEGRIRGNLMGKRVDFSARAVITPDPNLSIDQVGVPRTIAQNLTFPEIVTPFNIDS 796
Query: 406 LRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFN 465
++ LV G + +PGA Y+ R + L++ + L+ G VERH+ D DV++FN
Sbjct: 797 MQELVRRGNNQYPGAKYII-RDNGERVDLRFHPKPSDLH-LQFGYKVERHIRDNDVIIFN 854
Query: 466 RQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILM 525
RQP+LHK+S+M HR K+ P TFR N V TPYNADFDGDEMN+H+PQ+ E++AE
Sbjct: 855 RQPTLHKMSMMGHRVKILPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLESKAE----- 909
Query: 526 GSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTK 579
+T I+ V N+VTP++ + ++ QD +T T+RD F K
Sbjct: 910 ------ITEIMMV-----PRNIVTPQSNKPVMGIVQDSLTAVRKFTKRDVFIEK 952
Score = 217 bits (529), Expect = 6e-56
Identities = 123/333 (36%), Positives = 187/333 (56%), Gaps = 7/333 (2%)
Query: 609 PRKLWTGKQIFSLIMRPNRRCEVKANLETKG---KNYTGNKDLCVQDSY---VIIRNSEL 662
P+ L + +I ++M P ++N G + T + +D + V+I + EL
Sbjct: 901 PQSLESKAEITEIMMVPRNIVTPQSNKPVMGIVQDSLTAVRKFTKRDVFIEKVLIEHGEL 960
Query: 663 VCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTP 722
+ G + K +LG+ + S+ +I+ + G + A + + + +++ G S GI D
Sbjct: 961 LTGILCKKSLGTSS-GSLIHIIAMELGHDIARMFYSDVQCVVNNWLLLEGHSIGIGDCIA 1019
Query: 723 GKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAK 782
+ + + + I + L+ PG T+ +T E + L+ R+
Sbjct: 1020 DSDTYDEIQRATKKAKKEVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDCRDKTGG 1079
Query: 783 ACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHS 842
+ + L N M +GSKGS INISQ+IA VGQQ + GKR+P GF R+LPHF +
Sbjct: 1080 SAQKSLSEFNNFKAMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFRHRTLPHFIKDD 1139
Query: 843 KIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
P +RGFVENS+ GLTPTEFFFH MGGREGL+DTAVKT+ETGY+QRRLVK++E L +
Sbjct: 1140 YGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEGLSVA 1199
Query: 903 YDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRP 935
YD TVRN+ +++Q RYG DG+D +E ++ P
Sbjct: 1200 YDGTVRNSNNQLIQLRYGEDGMDGIAIEFQNMP 1232
Score = 89.8 bits (213), Expect = 1e-17
Identities = 45/80 (56%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 1039 EPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIITA 1098
+PG VGALAAQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN S+ TP +T
Sbjct: 1407 KPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTV 1466
Query: 1099 ELM--QPYDQEFARRVKGRI 1116
L+ D E A+ V R+
Sbjct: 1467 FLIGQAARDAEMAKAVLCRL 1486
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 122 bits (294), Expect = 2e-27
Identities = 59/109 (54%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Query: 818 QQALNGK-RVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLV 876
QQ ++ +P RSLP F + P A GFV+ F TG+ P E+FFH M GREGLV
Sbjct: 292 QQGMSSSGTLPEISSGRSLPSFLPYDTSPRAGGFVDGRFLTGIRPQEYFFHCMAGREGLV 351
Query: 877 DTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
DTAVKT+ +GYLQR L+K LE L + YD+TVR++ G +VQF YG DGLD
Sbjct: 352 DTAVKTSRSGYLQRCLIKHLEGLQVAYDLTVRDSDGSIVQFYYGEDGLD 400
Score = 92.3 bits (219), Expect = 2e-18
Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 452 VERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMH 510
V RH+ +GDV+L NRQP+LH+ SIM H+ +V P ++T R + C YNADFDGDEMN H
Sbjct: 1 VYRHIQNGDVMLLNRQPTLHRPSIMAHKVRVLPSEKTIRLHYANCKAYNADFDGDEMNAH 60
Query: 511 LPQTEEARAEALILMGSH 528
PQ E ARAEA + ++
Sbjct: 61 FPQNELARAEAYTIASTN 78
Score = 89.8 bits (213), Expect = 1e-17
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 1024 RFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKE 1083
+F + + K R +++PG AVG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++E
Sbjct: 572 KFRSLMYLKTLRSLVDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRMRE 631
Query: 1084 II-NASRNISTPIITAELM 1101
I+ AS NI TP + L+
Sbjct: 632 ILMTASANIKTPTMDMPLL 650
>SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45)
Length = 638
Score = 58.8 bits (136), Expect = 2e-08
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 768 VMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVP 827
+ S + + ELA K + N+ +M SG++GS I Q+ G A K
Sbjct: 290 IWTSANAELTELAMKNIREDQQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTA 349
Query: 828 NGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGY 887
G E P + ++F GL+ E+F T G R+GL DTA+KTA+ GY
Sbjct: 350 GGGEIIENP--------------ILSNFKEGLSILEYFISTHGARKGLADTALKTADAGY 395
Query: 888 LQRRLVKSLEDLVL 901
L RRL +D+++
Sbjct: 396 LTRRLHDVSQDVIV 409
Score = 53.2 bits (122), Expect = 1e-06
Identities = 23/32 (71%), Positives = 27/32 (84%)
Query: 1039 EPGTAVGALAAQSIGEPGTQMTLKTFHFAGVA 1070
+ G AVG +AAQSIGEPGTQ+TL+TFH GVA
Sbjct: 510 QKGEAVGVIAAQSIGEPGTQLTLRTFHVGGVA 541
>SB_6124| Best HMM Match : Ribul_P_3_epim (HMM E-Value=9.5)
Length = 158
Score = 54.8 bits (126), Expect = 4e-07
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 342 GLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVP 385
G+ Q L+ K+G FR ++ GKRVD+++R+VISPDP + E+GVP
Sbjct: 114 GIRQLLEKKEGLFRKHMMGKRVDYAARSVISPDPYINTDEIGVP 157
>SB_21907| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=1.3e-21)
Length = 380
Score = 51.6 bits (118), Expect = 4e-06
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 1039 EPGTAVGALAAQSIGEPGTQMTLKTFHFAGVA 1070
+ G +VG +AAQSIGEPGTQ+TL+TFH GVA
Sbjct: 129 QKGDSVGIIAAQSIGEPGTQLTLRTFHVGGVA 160
Score = 36.7 bits (81), Expect = 0.11
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 875 LVDTAVKTAETGYLQRRLVKSLEDLVL 901
L DTA+KTA+ GYL RRLV +D+V+
Sbjct: 2 LADTALKTADAGYLTRRLVDVAQDVVI 28
>SB_45256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 36.7 bits (81), Expect = 0.11
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 995 GRVRALRARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGE 1054
G +R RA GC R L L++L + + + C+ K + E +AV A+ GE
Sbjct: 64 GCLRKKRALNPGC-RWCLNLDKLVEDRQTKIVLACYRKLCEFLTE--SAVVKCASTLNGE 120
Query: 1055 PGTQMTLKTFHFAGVASMNITQGV----PRVKEIINASRNISTPIITAELMQPYDQEFAR 1110
T TL H A ++I + V P+VK I++ S + TP T + M P ++
Sbjct: 121 YNT--TLALLHEALANPVSIEERVGNQRPQVKRILDQSSSAETPGQTDKKMAPASRDLQA 178
Query: 1111 RVKGRI 1116
++ +
Sbjct: 179 KLPAEV 184
>SB_33756| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0035)
Length = 351
Score = 36.7 bits (81), Expect = 0.11
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 995 GRVRALRARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGE 1054
G +R RA GC R L L++L + + + C+ K + E +AV A+ GE
Sbjct: 64 GCLRKKRALNPGC-RWCLNLDKLVEDRQTKIVLACYRKLCEFLTE--SAVVKCASTLNGE 120
Query: 1055 PGTQMTLKTFHFAGVASMNITQGV----PRVKEIINASRNISTPIITAELMQPYDQEFAR 1110
T TL H A ++I + V P+VK I++ S + TP T + M P ++
Sbjct: 121 YNT--TLALLHEALANPVSIEERVGNQRPQVKRILDQSSSAETPGQTDKKMAPASRDLQA 178
Query: 1111 RVKGRI 1116
++ +
Sbjct: 179 KLPAEV 184
>SB_48008| Best HMM Match : M (HMM E-Value=0.0068)
Length = 1068
Score = 35.5 bits (78), Expect = 0.26
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 136 YLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGI--LKIVHEKYRAKKPTDPIVKK 193
Y L + ++ + KA+ + + E++ V K S+ + L++ +E+ R + DP +
Sbjct: 9 YGLSEAVQEIKDHKAQLQIRDQNIESLTASVNKLSLAVNDLEMENEELRERLGMDPRDRL 68
Query: 194 VLMDFHEAKESNKEVAAMINSGLVKEMSPLE 224
+ + + ++ KE +A +N LVKE+ LE
Sbjct: 69 DIEEIKQKRKVKKEQSAALNRVLVKEIERLE 99
>SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 33.9 bits (74), Expect = 0.79
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 267 SVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYIN 324
SV+ D + T ++ T + +L+ D HL++ C L+ E D + AAL N
Sbjct: 208 SVIKDFSSATAKETDTHTSAVKMLVTDEAPPHLSTVAVCSLLHEQEDVIAAGAALAFN 265
>SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)
Length = 616
Score = 30.7 bits (66), Expect = 7.4
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 193 KVLMDFHEAKESNKEVAAMINSGLVKEMSPL 223
K+L DFH+AKES E A+ S VKE+S +
Sbjct: 245 KILSDFHKAKESADE--ALFTSKQVKELSQI 273
>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 30.7 bits (66), Expect = 7.4
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 98 FRAIITILQTICKECAKV-MLPESLKKSY-RRKFINPEMSYLLKKNLKAVVHKKAKTFSK 155
F ++I LQ K+ + +L +LKKSY RRKF + +L+ +V K K K
Sbjct: 836 FSSLIRHLQGRVKKSFSIHLLQFALKKSYQRRKFGRVDFQFLVYCIHCSVHQKNLKWNLK 895
Query: 156 CPSCEAINGM 165
C A NGM
Sbjct: 896 CMQLFAANGM 905
>SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 30.3 bits (65), Expect = 9.7
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 181 YRAKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNL 228
Y A P + + V+M H AK+ +K + A + + KE +PL + N+
Sbjct: 216 YSASIPENAAMGSVVMQVH-AKDLDKSINAPVTYAIDKETNPLRMFNI 262
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,357,694
Number of Sequences: 59808
Number of extensions: 1656787
Number of successful extensions: 3453
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3416
Number of HSP's gapped (non-prelim): 35
length of query: 1191
length of database: 16,821,457
effective HSP length: 90
effective length of query: 1101
effective length of database: 11,438,737
effective search space: 12594049437
effective search space used: 12594049437
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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