GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000760-TA|BGIBMGA000760-PA|IPR002345|Lipocalin,
IPR006592|RNA polymerase I subunit A, N-terminal, IPR007080|RNA
polymerase Rpb1, domain 1, IPR000722|RNA polymerase, alpha subunit,
IPR007066|RNA polymerase Rpb1, domain 3, IPR007083|RNA polymerase
Rpb1, domain 4, IPR007081|RNA polymerase Rpb1, domain 5
         (1191 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    29   0.55 
L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.     27   2.2  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    26   5.1  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           26   6.8  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    26   6.8  
DQ974167-1|ABJ52807.1|  434|Anopheles gambiae serpin 8 protein.        25   8.9  

>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 266 PSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQL 317
           P+   D+   T E  L  +  + +  +  +A+H+ +  K E ++EDW Y+ L
Sbjct: 450 PTCCGDLSP-TFEKPLLREMEKTIEASRFVAQHVRNKDKFESVKEDWKYVAL 500


>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 11/99 (11%)

Query: 889 QRRLV---KSLED--LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDL--ARV 941
           Q+RL+   K LED   +  Y++   +    V++ R G      T + GK   +++  +  
Sbjct: 40  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKT-LTGKTITLEVEPSDT 98

Query: 942 LADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
           + +V+AK QDK   P D   ++ A ++   L+D +T +D
Sbjct: 99  IENVKAKIQDKEGIPPDQQRLIFAGKQ---LEDGRTLSD 134



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 11/99 (11%)

Query: 889 QRRLV---KSLED--LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDL--ARV 941
           Q+RL+   K LED   +  Y++   +    V++ R G      T + GK   +++  +  
Sbjct: 116 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKT-LTGKTITLEVEPSDT 174

Query: 942 LADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
           + +V+AK QDK   P D   ++ A ++   L+D +T +D
Sbjct: 175 IENVKAKIQDKEGIPPDQQRLIFAGKQ---LEDGRTLSD 210



 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 936 VDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTD 980
           V+ +  + +V+AK QDK   P D   ++ A ++   L+D +T +D
Sbjct: 17  VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ---LEDGRTLSD 58


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 924 LDPTYMEGKDRPVDLARVLADVRAKCQDKNA 954
           L+  Y   K    ++ + LA+V+AK  DKN+
Sbjct: 753 LEDAYQSAKKTLANVEKKLAEVKAKSSDKNS 783


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 18/87 (20%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 292 NDVIARHLASAGKCELIQEDWDYLQLHAALY-INSEMSGIPLAMQPKKPGRGLVQRLKGK 350
           +D++ +  A   + +L+Q    + +L  +   I  E   + + M+PK   + L+ + KG+
Sbjct: 468 SDLVGKIRALRQELQLLQPQSGHCRLEVSRNEIFEESYRLIMKMRPKDMRKRLMVKFKGE 527

Query: 351 QGRFRGNLSGKRVDFSSRTVISPDPNL 377
           +G   G ++ + +   S  +++P   L
Sbjct: 528 EGLDYGGVAREWLYLLSHEMLNPQYGL 554


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 6/150 (4%)

Query: 780 AAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFE 839
           A   C R++ P   P ++  +   G      Q+I   G +     R  NG     +    
Sbjct: 541 AEMGCHRDIDPEEYPTLLHFAARWGLERLCMQLIESPGGEIACEMRNINGRTPSDIAELA 600

Query: 840 RHSKIPAA-RGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAE--TGYLQRRLVKSL 896
            H KI +A + F + +  T  T   +F    G     V    K  +  TG   R   K+ 
Sbjct: 601 GHYKIASALKNFSQMNELT--TMYHYFKGVSGASSDQVMIQPKQQQHGTGLPLRTQNKTD 658

Query: 897 EDLVLQYDMTVRNATGEV-VQFRYGSDGLD 925
            + +L +   ++ A G + +    GSD +D
Sbjct: 659 AEKILSHVHALKQAEGYIDMSCANGSDQVD 688


>DQ974167-1|ABJ52807.1|  434|Anopheles gambiae serpin 8 protein.
          Length = 434

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 501 DFDGDEMNMHLPQTE 515
           DFD DE+ +HLP+ E
Sbjct: 317 DFDDDEVEVHLPKFE 331


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,209,130
Number of Sequences: 2123
Number of extensions: 51177
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 9
length of query: 1191
length of database: 516,269
effective HSP length: 72
effective length of query: 1119
effective length of database: 363,413
effective search space: 406659147
effective search space used: 406659147
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)