Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000760-TA|BGIBMGA000760-PA|IPR002345|Lipocalin,
IPR006592|RNA polymerase I subunit A, N-terminal, IPR007080|RNA
polymerase Rpb1, domain 1, IPR000722|RNA polymerase, alpha subunit,
IPR007066|RNA polymerase Rpb1, domain 3, IPR007083|RNA polymerase
Rpb1, domain 4, IPR007081|RNA polymerase Rpb1, domain 5
(1191 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (D... 1439 0.0
AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (D... 1439 0.0
AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III larg... 1434 0.0
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 588 e-167
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 588 e-167
AY091460-1|AAM12030.1| 387|Homo sapiens RNA polymerase III subu... 555 e-157
AY091461-1|AAM12031.1| 435|Homo sapiens RNA polymerase III subu... 472 e-132
AY091459-1|AAM12029.1| 374|Homo sapiens RNA polymerase III subu... 468 e-131
BC126303-1|AAI26304.1| 1720|Homo sapiens polymerase (RNA) I poly... 359 4e-98
BC117173-1|AAI17174.1| 1720|Homo sapiens polymerase (RNA) I poly... 359 4e-98
BC073968-1|AAH73968.1| 1032|Homo sapiens POLR1A protein protein. 359 4e-98
U33460-1|AAC99959.1| 1717|Homo sapiens DNA-directed RNA polymera... 355 5e-97
BC067295-1|AAH67295.1| 566|Homo sapiens POLR2A protein protein. 343 2e-93
AC012511-1|AAY24277.1| 922|Homo sapiens unknown protein. 157 2e-37
U33823-1|AAD09356.1| 441|Homo sapiens DNA-directed RNA polymera... 123 3e-27
BC017115-1|AAH17115.2| 574|Homo sapiens POLR1A protein protein. 93 7e-18
AY091462-1|AAM12032.1| 299|Homo sapiens RNA polymerase III subu... 58 2e-07
M21610-1|AAA60135.1| 113|Homo sapiens POLR2 protein. 57 4e-07
AK025568-1|BAB15171.1| 495|Homo sapiens protein ( Homo sapiens ... 52 9e-06
BC014399-1|AAH14399.1| 162|Homo sapiens POLR3A protein protein. 38 0.16
AF187991-1|AAF04107.1| 706|Homo sapiens zinc finger protein ZNF... 35 1.5
BC108912-1|AAI08913.1| 706|Homo sapiens zinc finger protein 225... 34 2.7
AK223477-1|BAD97197.1| 706|Homo sapiens zinc finger protein 225... 34 2.7
AC074331-1|AAF88105.1| 628|Homo sapiens ZNF225 [amino acids 79-... 34 2.7
AC021092-2|AAF24967.1| 706|Homo sapiens ZNF225 protein. 34 2.7
>BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide A, 155kDa protein.
Length = 1390
Score = 1439 bits (3567), Expect = 0.0
Identities = 700/1124 (62%), Positives = 852/1124 (75%), Gaps = 27/1124 (2%)
Query: 1 MPKEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRM 60
M KEQ+RET V +KISH+ F + SP ++Q AHI+V++KNL+ QD Q P +GVLD RM
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRM 60
Query: 61 GTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPES 120
GT++KD CETCG LA+C+GH+GYI L LP FHVGYFRA+I ILQ ICK C +ML +
Sbjct: 61 GTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQE 120
Query: 121 LKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEK 180
KK + P ++YL K+ LK + K + + C C A NG VKK G+LKI+HEK
Sbjct: 121 EKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKC--GLLKIIHEK 178
Query: 181 YRA-KKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPL 239
Y+ KK DPIV L F A E NKEV ++ + ++PL VLNLF+RIP ED+PL
Sbjct: 179 YKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQ-ENLNPLVVLNLFKRIPAEDVPL 237
Query: 240 LGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHL 299
L MN + +P DLILTRL VPPLCIRPSVVSD+K+GTNEDDLTMK +EI+ +NDVI +H
Sbjct: 238 LLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHR 297
Query: 300 ASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLS 359
S K ++I EDWD+LQL ALYINSE+SGIPL M PKK RG VQRLKGKQGRFRGNLS
Sbjct: 298 ISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLS 357
Query: 360 GKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG 419
GKRVDFS RTVISPDPNL+I EV VPVHVAKILT+PE+V AN+ +LR+LV NGP+VHPG
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Query: 420 ANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHR 479
AN++QQR + K++LKYGNREK+AQELK GD+VERHL+DGDVVLFNRQPSLHKLSIM H
Sbjct: 418 ANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHL 477
Query: 480 AKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVS 539
A+V+P RTFRFNECVCTPYNADFDGDEMN+HLPQTEEA+AEAL+LMG+
Sbjct: 478 ARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGT------------ 525
Query: 540 LEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRI 599
K+NLVTPRNGE LIAA QDF+TG YL+T +DTFF +++A Q+ A +L G D +++
Sbjct: 526 ----KANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKV 581
Query: 600 DMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGN-KDLCVQDSYVIIR 658
+PPP I+KP LWTGKQIFS+I+RP+ V+ANL TKGK Y G +DLC DSYV I+
Sbjct: 582 RLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQ 641
Query: 659 NSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGII 718
NSEL+ GSMDK TLGSG+K++IFYILLRDWG+ A M RLAR+A Y+ NRGFS GI
Sbjct: 642 NSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIG 701
Query: 719 DVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRE 778
DVTPG+ L++AK +LL +GY KCD YI + G LQ QPGCT EETLEA++L ELS IR+
Sbjct: 702 DVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRD 761
Query: 779 LAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHF 838
A AC REL +N+PL MA GSKGS INISQMIACVGQQA++G RVP+GFE+RSLPHF
Sbjct: 762 HAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHF 821
Query: 839 ERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLED 898
E+HSK+PAA+GFV NSFY+GLTPTEFFFHTM GREGLVDTAVKTAETGY+QRRLVKSLED
Sbjct: 822 EKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLED 881
Query: 899 LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNAEPLD 958
L QYD+TVR++TG+++QF YG DGLDP MEGKD P++ RVL +++A + L
Sbjct: 882 LCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCPSEPALS 941
Query: 959 GDGIVLAAEETLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYA----GC--GRAAL 1012
+ ++L E + +F D F E+ F+K + +++ R +Y G R
Sbjct: 942 KNELILTTESIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLY 1001
Query: 1013 QLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASM 1072
QL+R+T TQ+ +FL C KY R +EPG+AVGAL AQSIGEPGTQMTLKTFHFAGVASM
Sbjct: 1002 QLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061
Query: 1073 NITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
NIT GVPR+KEIINAS+ ISTPIITA+L + D ++AR VKGRI
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRI 1105
Score = 57.6 bits (133), Expect = 2e-07
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1109 ARRVKGRICTSKLKVKPAEVTAVSAWAIKVTG-EPSKSCGWLNMSLQQLGRQLPAVVVKG 1167
A V+ ICTSKL+VKP +V + VT E SKS + LQ L LP VVV+G
Sbjct: 1146 AETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSS--MYYVLQFLKEDLPKVVVQG 1203
Query: 1168 LPQVSRAVIACDDSSEK 1184
+P+VSRAVI D+ S K
Sbjct: 1204 IPEVSRAVIHIDEQSGK 1220
>AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) (155kD) (RPC155) protein.
Length = 1390
Score = 1439 bits (3567), Expect = 0.0
Identities = 700/1124 (62%), Positives = 852/1124 (75%), Gaps = 27/1124 (2%)
Query: 1 MPKEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRM 60
M KEQ+RET V +KISH+ F + SP ++Q AHI+V++KNL+ QD Q P +GVLD RM
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRM 60
Query: 61 GTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPES 120
GT++KD CETCG LA+C+GH+GYI L LP FHVGYFRA+I ILQ ICK C +ML +
Sbjct: 61 GTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQE 120
Query: 121 LKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEK 180
KK + P ++YL K+ LK + K + + C C A NG VKK G+LKI+HEK
Sbjct: 121 EKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKC--GLLKIIHEK 178
Query: 181 YRA-KKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPL 239
Y+ KK DPIV L F A E NKEV ++ + ++PL VLNLF+RIP ED+PL
Sbjct: 179 YKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQ-ENLNPLVVLNLFKRIPAEDVPL 237
Query: 240 LGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHL 299
L MN + +P DLILTRL VPPLCIRPSVVSD+K+GTNEDDLTMK +EI+ +NDVI +H
Sbjct: 238 LLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHR 297
Query: 300 ASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLS 359
S K ++I EDWD+LQL ALYINSE+SGIPL M PKK RG VQRLKGKQGRFRGNLS
Sbjct: 298 ISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLS 357
Query: 360 GKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG 419
GKRVDFS RTVISPDPNL+I EV VPVHVAKILT+PE+V AN+ +LR+LV NGP+VHPG
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Query: 420 ANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHR 479
AN++QQR + K++LKYGNREK+AQELK GD+VERHL+DGDVVLFNRQPSLHKLSIM H
Sbjct: 418 ANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHL 477
Query: 480 AKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVS 539
A+V+P RTFRFNECVCTPYNADFDGDEMN+HLPQTEEA+AEAL+LMG+
Sbjct: 478 ARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGT------------ 525
Query: 540 LEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRI 599
K+NLVTPRNGE LIAA QDF+TG YL+T +DTFF +++A Q+ A +L G D +++
Sbjct: 526 ----KANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKV 581
Query: 600 DMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGN-KDLCVQDSYVIIR 658
+PPP I+KP LWTGKQIFS+I+RP+ V+ANL TKGK Y G +DLC DSYV I+
Sbjct: 582 RLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQ 641
Query: 659 NSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGII 718
NSEL+ GSMDK TLGSG+K++IFYILLRDWG+ A M RLAR+A Y+ NRGFS GI
Sbjct: 642 NSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIG 701
Query: 719 DVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRE 778
DVTPG+ L++AK +LL +GY KCD YI + G LQ QPGCT EETLEA++L ELS IR+
Sbjct: 702 DVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRD 761
Query: 779 LAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHF 838
A AC REL +N+PL MA GSKGS INISQMIACVGQQA++G RVP+GFE+RSLPHF
Sbjct: 762 HAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHF 821
Query: 839 ERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLED 898
E+HSK+PAA+GFV NSFY+GLTPTEFFFHTM GREGLVDTAVKTAETGY+QRRLVKSLED
Sbjct: 822 EKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLED 881
Query: 899 LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNAEPLD 958
L QYD+TVR++TG+++QF YG DGLDP MEGKD P++ RVL +++A + L
Sbjct: 882 LCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCPSEPALS 941
Query: 959 GDGIVLAAEETLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYA----GC--GRAAL 1012
+ ++L E + +F D F E+ F+K + +++ R +Y G R
Sbjct: 942 KNELILTTESIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLY 1001
Query: 1013 QLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASM 1072
QL+R+T TQ+ +FL C KY R +EPG+AVGAL AQSIGEPGTQMTLKTFHFAGVASM
Sbjct: 1002 QLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061
Query: 1073 NITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
NIT GVPR+KEIINAS+ ISTPIITA+L + D ++AR VKGRI
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRI 1105
Score = 57.6 bits (133), Expect = 2e-07
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1109 ARRVKGRICTSKLKVKPAEVTAVSAWAIKVTG-EPSKSCGWLNMSLQQLGRQLPAVVVKG 1167
A V+ ICTSKL+VKP +V + VT E SKS + LQ L LP VVV+G
Sbjct: 1146 AETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSS--MYYVLQFLKEDLPKVVVQG 1203
Query: 1168 LPQVSRAVIACDDSSEK 1184
+P+VSRAVI D+ S K
Sbjct: 1204 IPEVSRAVIHIDEQSGK 1220
>AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III largest
subunit protein.
Length = 1391
Score = 1434 bits (3554), Expect = 0.0
Identities = 697/1124 (62%), Positives = 849/1124 (75%), Gaps = 27/1124 (2%)
Query: 1 MPKEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRM 60
M KEQ+RET V +K SH+ F + SP ++Q AHI+V++KNL+ QD Q P +GVLD RM
Sbjct: 1 MVKEQFRETDVAKKTSHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRM 60
Query: 61 GTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPES 120
GT++KD CETCG LA+C+GH+GYI L LP FHVGYFRA+I ILQ ICK C +ML +
Sbjct: 61 GTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQE 120
Query: 121 LKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEK 180
KK + P ++YL K+ LK + K + + C C A NG VKK G+LKI+HEK
Sbjct: 121 EKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKC--GLLKIIHEK 178
Query: 181 YRA-KKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPL 239
Y+ KK DPIV L F A E NKEV ++ + ++PL VLNLF+RIP ED+PL
Sbjct: 179 YKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQ-ENLNPLVVLNLFKRIPAEDVPL 237
Query: 240 LGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHL 299
L MN + +P DLILTRL VPPLC RPSVVSD+K+GTNEDDLTMK +EI+ +NDVI +H
Sbjct: 238 LLMNPEAGKPSDLILTRLLVPPLCFRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHR 297
Query: 300 ASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLS 359
S K ++I EDWD+LQL ALYINSE+SGIPL M PKK RG VQRLKGKQGRFRGNLS
Sbjct: 298 ISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLS 357
Query: 360 GKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG 419
GKRVDFS RTVISPDPNL+I EV VPVHVAKILT+PE+V AN+ +LR+LV NGP+VHPG
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Query: 420 ANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHR 479
AN++QQR + K++LKYGNREK+AQELK GD+VERHL+DGDVVLFNRQPSLHKLSIM H
Sbjct: 418 ANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHL 477
Query: 480 AKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVS 539
A+V+P RTFRFNECVCTPYNADFDGDEMN+HLPQTEEA+AEAL+LMG+
Sbjct: 478 ARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGT------------ 525
Query: 540 LEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRI 599
K+NLVTPRNGE LIAA QDF+TG YL+T +DTFF +++A Q+ A +L G D +++
Sbjct: 526 ----KANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKV 581
Query: 600 DMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGN-KDLCVQDSYVIIR 658
+PPP I+KP LWTGKQIFS+I+RP+ V+ANL TKGK Y G +DLC DSYV I+
Sbjct: 582 RLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQ 641
Query: 659 NSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGII 718
NSEL+ GSMDK TLGSG+K++IFYILLRDWG+ A M RLAR+A Y+ NRGFS GI
Sbjct: 642 NSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIG 701
Query: 719 DVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRE 778
DVTPG+ L++AK +LL +GY KCD YI + G LQ QPGCT EETLEA++L ELS IR+
Sbjct: 702 DVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRD 761
Query: 779 LAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHF 838
A AC REL +N+PL MA GSKGS INISQMIACVGQQA++G RVP+GFE+RSLPHF
Sbjct: 762 HAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHF 821
Query: 839 ERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLED 898
E+HSK+PAA+GFV NSFY+GLTPTEFFFHTM GREGLVDTAVKTAETGY+QRRLVKSLED
Sbjct: 822 EKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLED 881
Query: 899 LVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNAEPLD 958
L QYD+TVR++TG+++QF YG DGLDP MEGKD P++ RVL +++A + L
Sbjct: 882 LCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCPSEPALS 941
Query: 959 GDGIVLAAEETLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYA----GC--GRAAL 1012
+ ++L E + +F D F E+ F+K + +++ R +Y G R
Sbjct: 942 KNELILTTESIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLY 1001
Query: 1013 QLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASM 1072
QL+R+T TQ+ +FL C KY R +EPG+AVGAL AQSIGEPGTQMTLKTFHF GVASM
Sbjct: 1002 QLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFGGVASM 1061
Query: 1073 NITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRI 1116
NIT GVPR+KEIINAS+ ISTPIITA+L + D ++AR VKGRI
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRI 1105
Score = 57.6 bits (133), Expect = 2e-07
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1109 ARRVKGRICTSKLKVKPAEVTAVSAWAIKVTG-EPSKSCGWLNMSLQQLGRQLPAVVVKG 1167
A V+ ICTSKL+VKP +V + VT E SKS + LQ L LP VVV+G
Sbjct: 1146 AETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSS--MYYVLQFLKEDLPKVVVQG 1203
Query: 1168 LPQVSRAVIACDDSSEK 1184
+P+VSRAVI D+ S K
Sbjct: 1204 IPEVSRAVIHIDEQSGK 1220
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 588 bits (1453), Expect = e-167
Identities = 352/922 (38%), Positives = 518/922 (56%), Gaps = 51/922 (5%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
R I V F V SP +++ + E K +G R P G++D R G ++ C+TC
Sbjct: 16 RTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGR-PKLGGLMDPRQGVIERTGRCQTC 74
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
+ EC GHFG+I+L PVFHVG+ + +L+ +C C+K+++ + NP
Sbjct: 75 AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSN----------NP 124
Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCPS---CEAINGMVKKSSI----GILKIVHEK-YRAK 184
++ +L K+ + + C CE M K + G + EK +
Sbjct: 125 KIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGC 184
Query: 185 KPTDPIVKKVLMDFH-EAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMN 243
P +++ ++ + E K N++ ++ +SP V +F+RI DE+ +LGM
Sbjct: 185 GRYQPRIRRSGLELYAEWKHVNEDSQ---EKKIL--LSPERVHEIFKRISDEECFVLGME 239
Query: 244 VKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAG 303
+ +RPE +I+T LPVPPL +RP+VV A N+DDLT K ++I+ IN+ + R+ +
Sbjct: 240 PRYARPEWMIVTVLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGA 298
Query: 304 KCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKR 362
+I ED LQ H A +++E+ G+P AMQ +P + L QRLKGK+GR RGNL GKR
Sbjct: 299 AAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKR 358
Query: 363 VDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANY 422
VDFS+RTVI+PDPNL I +VGVP +A +T+ E V P N+ L+ LV G +PGA Y
Sbjct: 359 VDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKY 418
Query: 423 VQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV 482
+ R + L++ + L+ G VERH+ DGD+V+FNRQP+LHK+S+M HR ++
Sbjct: 419 II-RDNGDRIDLRFHPKPSDLH-LQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRI 476
Query: 483 QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQ 542
P TFR N V TPYNADFDGDEMN+HLPQ+ E RAE + ++ R+
Sbjct: 477 LPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEI--------QELAMVPRM---- 524
Query: 543 NKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMP 602
+VTP++ ++ QD +T T+RD F + E L L +T +P
Sbjct: 525 ----IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFL-----STWDGKVP 575
Query: 603 PPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSEL 662
PAI+KPR LWTGKQIFSLI+ + C + ++ K + D+ V++ N EL
Sbjct: 576 QPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGEL 635
Query: 663 VCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTP 722
+ G + K +LG+ + S+ +I + G + + + + +++ G + GI D
Sbjct: 636 IMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIA 694
Query: 723 GKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAK 782
K + ++ I + L+ PG T+ +T E + L+ R+
Sbjct: 695 DSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGS 754
Query: 783 ACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHS 842
+ + L N M SG+KGS INISQ+IA VGQQ + GKR+P GF+ R+LPHF +
Sbjct: 755 SAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDD 814
Query: 843 KIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
P +RGFVENS+ GLTPTEFFFH MGGREGL+DTAVKTAETGY+QRRL+KS+E ++++
Sbjct: 815 YGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVK 874
Query: 903 YDMTVRNATGEVVQFRYGSDGL 924
YD TVRN+ +VVQ RYG DGL
Sbjct: 875 YDATVRNSINQVVQLRYGEDGL 896
Score = 95.5 bits (227), Expect = 1e-18
Identities = 49/111 (44%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 1007 CGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHF 1066
C R + RL+ L K+ + + PG VGALAAQS+GEP TQMTL TFH+
Sbjct: 1050 CSRRMAEEFRLSGEAFDLLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHY 1109
Query: 1067 AGVASMNITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRIC 1117
AGV++ N+T GVPR+KE+IN S+ TP +T L+ ++ A R K +C
Sbjct: 1110 AGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARD-AERAKDILC 1159
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 588 bits (1453), Expect = e-167
Identities = 352/922 (38%), Positives = 518/922 (56%), Gaps = 51/922 (5%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
R I V F V SP +++ + E K +G R P G++D R G ++ C+TC
Sbjct: 16 RTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGR-PKLGGLMDPRQGVIERTGRCQTC 74
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
+ EC GHFG+I+L PVFHVG+ + +L+ +C C+K+++ + NP
Sbjct: 75 AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSN----------NP 124
Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCPS---CEAINGMVKKSSI----GILKIVHEK-YRAK 184
++ +L K+ + + C CE M K + G + EK +
Sbjct: 125 KIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGC 184
Query: 185 KPTDPIVKKVLMDFH-EAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMN 243
P +++ ++ + E K N++ ++ +SP V +F+RI DE+ +LGM
Sbjct: 185 GRYQPRIRRSGLELYAEWKHVNEDSQ---EKKIL--LSPERVHEIFKRISDEECFVLGME 239
Query: 244 VKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAG 303
+ +RPE +I+T LPVPPL +RP+VV A N+DDLT K ++I+ IN+ + R+ +
Sbjct: 240 PRYARPEWMIVTVLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGA 298
Query: 304 KCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKR 362
+I ED LQ H A +++E+ G+P AMQ +P + L QRLKGK+GR RGNL GKR
Sbjct: 299 AAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKR 358
Query: 363 VDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANY 422
VDFS+RTVI+PDPNL I +VGVP +A +T+ E V P N+ L+ LV G +PGA Y
Sbjct: 359 VDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKY 418
Query: 423 VQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV 482
+ R + L++ + L+ G VERH+ DGD+V+FNRQP+LHK+S+M HR ++
Sbjct: 419 II-RDNGDRIDLRFHPKPSDLH-LQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRI 476
Query: 483 QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQ 542
P TFR N V TPYNADFDGDEMN+HLPQ+ E RAE + ++ R+
Sbjct: 477 LPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEI--------QELAMVPRM---- 524
Query: 543 NKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMP 602
+VTP++ ++ QD +T T+RD F + E L L +T +P
Sbjct: 525 ----IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFL-----STWDGKVP 575
Query: 603 PPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSEL 662
PAI+KPR LWTGKQIFSLI+ + C + ++ K + D+ V++ N EL
Sbjct: 576 QPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGEL 635
Query: 663 VCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTP 722
+ G + K +LG+ + S+ +I + G + + + + +++ G + GI D
Sbjct: 636 IMGILCKKSLGT-SAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIA 694
Query: 723 GKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAK 782
K + ++ I + L+ PG T+ +T E + L+ R+
Sbjct: 695 DSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGS 754
Query: 783 ACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHS 842
+ + L N M SG+KGS INISQ+IA VGQQ + GKR+P GF+ R+LPHF +
Sbjct: 755 SAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDD 814
Query: 843 KIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQ 902
P +RGFVENS+ GLTPTEFFFH MGGREGL+DTAVKTAETGY+QRRL+KS+E ++++
Sbjct: 815 YGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVK 874
Query: 903 YDMTVRNATGEVVQFRYGSDGL 924
YD TVRN+ +VVQ RYG DGL
Sbjct: 875 YDATVRNSINQVVQLRYGEDGL 896
Score = 95.1 bits (226), Expect = 1e-18
Identities = 49/111 (44%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 1007 CGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHF 1066
C R + RL+ L K+ + + PG VGALAAQS+GEP TQMTL TFH+
Sbjct: 1050 CSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHY 1109
Query: 1067 AGVASMNITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRIC 1117
AGV++ N+T GVPR+KE+IN S+ TP +T L+ ++ A R K +C
Sbjct: 1110 AGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARD-AERAKDILC 1159
>AY091460-1|AAM12030.1| 387|Homo sapiens RNA polymerase III subunit
RPC155-B protein.
Length = 387
Score = 555 bits (1370), Expect = e-157
Identities = 265/402 (65%), Positives = 320/402 (79%), Gaps = 17/402 (4%)
Query: 368 RTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRG 427
RTVISPDPNL+I EV VPVHVAKILT+PE+V AN+ +LR+LV NGP+VHPGAN++QQR
Sbjct: 2 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 61
Query: 428 LKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRT 487
+ K++LKYGNREK+AQELK GD+VERHL+DGDVVLFNRQPSLHKLSIM H A+V+P RT
Sbjct: 62 TQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRT 121
Query: 488 FRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNL 547
FRFNECVCTPYNADFDGDEMN+HLPQTEEA+AEAL+LMG+ K+NL
Sbjct: 122 FRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGT----------------KANL 165
Query: 548 VTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAII 607
VTPRNGE LIAA QDF+TG YL+T +DTFF +++A Q+ A +L G D +++ +PPP I+
Sbjct: 166 VTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTIL 225
Query: 608 KPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGN-KDLCVQDSYVIIRNSELVCGS 666
KP LWTGKQIFS+I+RP+ V+ANL TKGK Y G +DLC DSYV I+NSEL+ GS
Sbjct: 226 KPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGS 285
Query: 667 MDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKL 726
MDK TLGSG+K++IFYILLRDWG+ A M RLAR+A Y+ NRGFS GI DVTPG+ L
Sbjct: 286 MDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGL 345
Query: 727 IEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAV 768
++AK +LL +GY KCD YI + G LQ QPGCT EETLEA+
Sbjct: 346 LKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEAL 387
>AY091461-1|AAM12031.1| 435|Homo sapiens RNA polymerase III subunit
RPC155-C protein.
Length = 435
Score = 472 bits (1164), Expect = e-132
Identities = 232/372 (62%), Positives = 282/372 (75%), Gaps = 6/372 (1%)
Query: 751 GTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINIS 810
G LQ QPGCT EETLEA++L ELS IR+ A AC REL +N+PL MA GSKGS INIS
Sbjct: 3 GKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINIS 62
Query: 811 QMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMG 870
QMIACVGQQA++G RVP+GFE+RSLPHFE+HSK+PAA+GFV NSFY+GLTPTEFFFHTM
Sbjct: 63 QMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMA 122
Query: 871 GREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYME 930
GREGLVDTAVKTAETGY+QRRLVKSLEDL QYD+TVR++TG+++QF YG DGLDP ME
Sbjct: 123 GREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 182
Query: 931 GKDRPVDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFKNELLSFL 990
GKD P++ RVL +++A + L + ++L E + +F D F E+ F+
Sbjct: 183 GKDEPLEFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKKSEFLCCQDSFLQEIKKFI 242
Query: 991 KATAGRVRALRARYA----GC--GRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAV 1044
K + +++ R +Y G R QL+R+T TQ+ +FL C KY R +EPG+AV
Sbjct: 243 KGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAV 302
Query: 1045 GALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIITAELMQPY 1104
GAL AQSIGEPGTQMTLKTFHFAGVASMNIT GVPR+KEIINAS+ ISTPIITA+L +
Sbjct: 303 GALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDD 362
Query: 1105 DQEFARRVKGRI 1116
D ++AR VKGRI
Sbjct: 363 DADYARLVKGRI 374
>AY091459-1|AAM12029.1| 374|Homo sapiens RNA polymerase III subunit
RPC155-A protein.
Length = 374
Score = 468 bits (1153), Expect = e-131
Identities = 226/377 (59%), Positives = 274/377 (72%), Gaps = 4/377 (1%)
Query: 1 MPKEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRM 60
M KEQ+RET V +KISH+ F + SP ++Q AHI+V++KNL+ QD Q P +GVLD RM
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRM 60
Query: 61 GTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPES 120
GT++KD CETCG LA+C+GH+GYI L LP FHVGYFRA+I ILQ ICK C +ML +
Sbjct: 61 GTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQE 120
Query: 121 LKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEK 180
KK + P ++YL K+ LK + K + + C C A NG VKK G+LKI+HEK
Sbjct: 121 EKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKC--GLLKIIHEK 178
Query: 181 YRA-KKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPL 239
Y+ KK DPIV L F A E NKEV ++ + ++PL VLNLF+RIP ED+PL
Sbjct: 179 YKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQ-ENLNPLVVLNLFKRIPAEDVPL 237
Query: 240 LGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHL 299
L MN + +P DLILTRL VPPLCIRPSVVSD+K+GTNEDDLTMK +EI+ +NDVI +H
Sbjct: 238 LLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKPTEIIFLNDVIKKHR 297
Query: 300 ASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLS 359
S K ++I EDWD+LQL ALYINSE+SGIPL M PKK RG VQRLKGKQGRFRGNLS
Sbjct: 298 ISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLS 357
Query: 360 GKRVDFSSRTVISPDPN 376
GKRVDFS RTVISPDPN
Sbjct: 358 GKRVDFSGRTVISPDPN 374
>BC126303-1|AAI26304.1| 1720|Homo sapiens polymerase (RNA) I
polypeptide A, 194kDa protein.
Length = 1720
Score = 359 bits (882), Expect = 4e-98
Identities = 248/721 (34%), Positives = 374/721 (51%), Gaps = 73/721 (10%)
Query: 250 EDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQ 309
+D++L R + + + ++ T +++ + ++ I+ L + +
Sbjct: 333 KDVVLIRKLLALMAQEQKLPEEVATPTTDEE----KDSLIAIDRSFLSTLPGQSLIDKLY 388
Query: 310 EDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRT 369
W LQ H + +SEM + M K PG + Q L+ K+G FR ++ GKRVD+++R+
Sbjct: 389 NIWIRLQSHVNIVFDSEMDKL---MMDKYPG--IRQILEKKEGLFRKHMMGKRVDYAARS 443
Query: 370 VISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV-QQRGL 428
VI PD + E+G+P+ A LTYP+ V P N+Q LR+ V NGP+VHPGA+ V + G
Sbjct: 444 VICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGS 503
Query: 429 KTK-KYLKYGNREKIAQEL----------KCGDVVERHLVDGDVVLFNRQPSLHKLSIMC 477
+T + RE +A++L + +V RH+ +GD++L NRQP+LH+ SI
Sbjct: 504 RTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQA 563
Query: 478 HRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVII 536
HRA++ P ++ R + C YNADFDGDEMN H PQ+E RAEA +L A T
Sbjct: 564 HRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVL------ACT--- 614
Query: 537 RVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDAT 596
+ P++G+ L QD + G +T R FFT+ +L L D
Sbjct: 615 -------DQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLT--DKV 665
Query: 597 MRIDMPPPAIIKPRKLWTGKQIFS-LIMRPNRRCEVKANLETKGK------------NYT 643
R+ + P+I+KP LWTGKQ+ S L++ + NL K K +
Sbjct: 666 GRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKETPRSVP 725
Query: 644 GNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARM 703
G + +S VIIR EL+CG +DK+ GS + + + +G E + + + LAR+
Sbjct: 726 GFNPDSMCESQVIIREGELLCGVLDKAHYGS-SAYGLVHCCYEIYGGETSGKVLTCLARL 784
Query: 704 -ASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLE-----------SGYSKCDGYILEMEKG 751
+Y + RGF+ G+ D+ K + +++E + + + + +G
Sbjct: 785 FTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRG 844
Query: 752 TLQ-CQPGCTMEE--TLEAVMLSELSSIRELAAKACFR-ELH---PTNAPLIMAQSGSKG 804
Q G + ++ E++ KAC LH P N+ +M QSG+KG
Sbjct: 845 KWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKG 904
Query: 805 SNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEF 864
S +N Q+ +GQ L G+R P +SLP FE + P A GFV F TG+ P EF
Sbjct: 905 STVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEF 964
Query: 865 FFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGL 924
FFH M GREGLVDTAVKT+ +GYLQR ++K LE LV+QYD+TVR++ G VVQF YG DGL
Sbjct: 965 FFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1024
Query: 925 D 925
D
Sbjct: 1025 D 1025
Score = 92.7 bits (220), Expect = 7e-18
Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-ASRN 1090
K+QR + EPG AVG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ AS N
Sbjct: 1199 KWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN 1258
Query: 1091 ISTPIITAELMQPYDQEFARRVK 1113
I TP+++ ++ ++ +RVK
Sbjct: 1259 IKTPMMSVPVLN--TKKALKRVK 1279
Score = 49.6 bits (113), Expect = 7e-05
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
R++ ++F + S +++ + ++ IT +L D P+ +G+ D +G C TC
Sbjct: 10 RRLQGISFGMYSAEELKKLS-VKSITNPRYL-DSLGNPSANGLYDLALGPADSKEVCSTC 67
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESL 121
+ C GH G+I+L L V++ F + +L+ C C + P ++
Sbjct: 68 VQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAV 116
>BC117173-1|AAI17174.1| 1720|Homo sapiens polymerase (RNA) I
polypeptide A, 194kDa protein.
Length = 1720
Score = 359 bits (882), Expect = 4e-98
Identities = 248/721 (34%), Positives = 374/721 (51%), Gaps = 73/721 (10%)
Query: 250 EDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQ 309
+D++L R + + + ++ T +++ + ++ I+ L + +
Sbjct: 333 KDVVLIRKLLALMAQEQKLPEEVATPTTDEE----KDSLIAIDRSFLSTLPGQSLIDKLY 388
Query: 310 EDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRT 369
W LQ H + +SEM + M K PG + Q L+ K+G FR ++ GKRVD+++R+
Sbjct: 389 NIWIRLQSHVNIVFDSEMDKL---MMDKYPG--IRQILEKKEGLFRKHMMGKRVDYAARS 443
Query: 370 VISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV-QQRGL 428
VI PD + E+G+P+ A LTYP+ V P N+Q LR+ V NGP+VHPGA+ V + G
Sbjct: 444 VICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGS 503
Query: 429 KTK-KYLKYGNREKIAQEL----------KCGDVVERHLVDGDVVLFNRQPSLHKLSIMC 477
+T + RE +A++L + +V RH+ +GD++L NRQP+LH+ SI
Sbjct: 504 RTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQA 563
Query: 478 HRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVII 536
HRA++ P ++ R + C YNADFDGDEMN H PQ+E RAEA +L A T
Sbjct: 564 HRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVL------ACT--- 614
Query: 537 RVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDAT 596
+ P++G+ L QD + G +T R FFT+ +L L D
Sbjct: 615 -------DQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLT--DKV 665
Query: 597 MRIDMPPPAIIKPRKLWTGKQIFS-LIMRPNRRCEVKANLETKGK------------NYT 643
R+ + P+I+KP LWTGKQ+ S L++ + NL K K +
Sbjct: 666 GRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKETPRSVP 725
Query: 644 GNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARM 703
G + +S VIIR EL+CG +DK+ GS + + + +G E + + + LAR+
Sbjct: 726 GFNPDSMCESQVIIREGELLCGVLDKAHYGS-SAYGLVHCCYEIYGGETSGKVLTCLARL 784
Query: 704 -ASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLE-----------SGYSKCDGYILEMEKG 751
+Y + RGF+ G+ D+ K + +++E + + + + +G
Sbjct: 785 FTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRG 844
Query: 752 TLQ-CQPGCTMEE--TLEAVMLSELSSIRELAAKACFR-ELH---PTNAPLIMAQSGSKG 804
Q G + ++ E++ KAC LH P N+ +M QSG+KG
Sbjct: 845 KWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKG 904
Query: 805 SNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEF 864
S +N Q+ +GQ L G+R P +SLP FE + P A GFV F TG+ P EF
Sbjct: 905 STVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEF 964
Query: 865 FFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGL 924
FFH M GREGLVDTAVKT+ +GYLQR ++K LE LV+QYD+TVR++ G VVQF YG DGL
Sbjct: 965 FFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1024
Query: 925 D 925
D
Sbjct: 1025 D 1025
Score = 92.7 bits (220), Expect = 7e-18
Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-ASRN 1090
K+QR + EPG AVG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ AS N
Sbjct: 1199 KWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN 1258
Query: 1091 ISTPIITAELMQPYDQEFARRVK 1113
I TP+++ ++ ++ +RVK
Sbjct: 1259 IKTPMMSVPVLN--TKKALKRVK 1279
Score = 49.6 bits (113), Expect = 7e-05
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
R++ ++F + S +++ + ++ IT +L D P+ +G+ D +G C TC
Sbjct: 10 RRLQGISFGMYSAEELKKLS-VKSITNPRYL-DSLGNPSANGLYDLALGPADSKEVCSTC 67
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESL 121
+ C GH G+I+L L V++ F + +L+ C C + P ++
Sbjct: 68 VQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAV 116
>BC073968-1|AAH73968.1| 1032|Homo sapiens POLR1A protein protein.
Length = 1032
Score = 359 bits (882), Expect = 4e-98
Identities = 248/721 (34%), Positives = 374/721 (51%), Gaps = 73/721 (10%)
Query: 250 EDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQ 309
+D++L R + + + ++ T +++ + ++ I+ L + +
Sbjct: 333 KDVVLIRKLLALMAQEQKLPEEVATPTTDEE----KDSLIAIDRSFLSTLPGQSLIDKLY 388
Query: 310 EDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRT 369
W LQ H + +SEM + M K PG + Q L+ K+G FR ++ GKRVD+++R+
Sbjct: 389 NIWIRLQSHVNIVFDSEMDKL---MMDKYPG--IRQILEKKEGLFRKHMMGKRVDYAARS 443
Query: 370 VISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV-QQRGL 428
VI PD + E+G+P+ A LTYP+ V P N+Q LR+ V NGP+VHPGA+ V + G
Sbjct: 444 VICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGS 503
Query: 429 KTK-KYLKYGNREKIAQEL----------KCGDVVERHLVDGDVVLFNRQPSLHKLSIMC 477
+T + RE +A++L + +V RH+ +GD++L NRQP+LH+ SI
Sbjct: 504 RTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQA 563
Query: 478 HRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVII 536
HRA++ P ++ R + C YNADFDGDEMN H PQ+E RAEA +L A T
Sbjct: 564 HRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVL------ACT--- 614
Query: 537 RVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDAT 596
+ P++G+ L QD + G +T R FFT+ +L L D
Sbjct: 615 -------DQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLT--DKV 665
Query: 597 MRIDMPPPAIIKPRKLWTGKQIFS-LIMRPNRRCEVKANLETKGK------------NYT 643
R+ + P+I+KP LWTGKQ+ S L++ + NL K K +
Sbjct: 666 GRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKETPRSVP 725
Query: 644 GNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARM 703
G + +S VIIR EL+CG +DK+ GS + + + +G E + + + LAR+
Sbjct: 726 GFNPDSMCESQVIIREGELLCGVLDKAHYGS-SAYGLVHCCYEIYGGETSGKVLTCLARL 784
Query: 704 -ASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLE-----------SGYSKCDGYILEMEKG 751
+Y + RGF+ G+ D+ K + +++E + + + + +G
Sbjct: 785 FTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRG 844
Query: 752 TLQ-CQPGCTMEE--TLEAVMLSELSSIRELAAKACFR-ELH---PTNAPLIMAQSGSKG 804
Q G + ++ E++ KAC LH P N+ +M QSG+KG
Sbjct: 845 KWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKG 904
Query: 805 SNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEF 864
S +N Q+ +GQ L G+R P +SLP FE + P A GFV F TG+ P EF
Sbjct: 905 STVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEF 964
Query: 865 FFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGL 924
FFH M GREGLVDTAVKT+ +GYLQR ++K LE LV+QYD+TVR++ G VVQF YG DGL
Sbjct: 965 FFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1024
Query: 925 D 925
D
Sbjct: 1025 D 1025
Score = 49.6 bits (113), Expect = 7e-05
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
R++ ++F + S +++ + ++ IT +L D P+ +G+ D +G C TC
Sbjct: 10 RRLQGISFGMYSAEELKKLS-VKSITNPRYL-DSLGNPSANGLYDLALGPADSKEVCSTC 67
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESL 121
+ C GH G+I+L L V++ F + +L+ C C + P ++
Sbjct: 68 VQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAV 116
>U33460-1|AAC99959.1| 1717|Homo sapiens DNA-directed RNA polymerase I,
largest subunit protein.
Length = 1717
Score = 355 bits (873), Expect = 5e-97
Identities = 247/721 (34%), Positives = 372/721 (51%), Gaps = 73/721 (10%)
Query: 250 EDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQ 309
+D++L R + + + ++ T +++ + ++ I+ L + +
Sbjct: 333 KDVVLIRKLLALMAQEQKLPEEVATPTTDEE----KDSLIAIDRSFLSTLPGQSLIDKLY 388
Query: 310 EDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRT 369
W LQ H + +SEM + M+ K PG + Q L+ K+G FR ++ GKRVD ++R+
Sbjct: 389 NIWIRLQSHVNIVFDSEMDKL---MRDKYPG--IRQILEKKEGLFRKHMMGKRVDSTARS 443
Query: 370 VISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYV-QQRGL 428
VI PD + E+G+P+ A LTYP+ V P N+Q LR+ V NGP+VHPGA+ V + G
Sbjct: 444 VICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGS 503
Query: 429 KTK-KYLKYGNREKIAQEL----------KCGDVVERHLVDGDVVLFNRQPSLHKLSIMC 477
+T + RE +A++L + +V RH+ +GD++L NRQP+LH+ SI
Sbjct: 504 RTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQA 563
Query: 478 HRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVII 536
HRA++ P ++ R + C YNADFDGDEMN H PQ+E RAEA +L A T
Sbjct: 564 HRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVL------ACT--- 614
Query: 537 RVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDAT 596
+ P++G+ L QD + G +T R FFT+ +L L D
Sbjct: 615 -------DQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLT--DKV 665
Query: 597 MRIDMPPPAIIKPRKLWTGKQIFS-LIMRPNRRCEVKANLETKGK------------NYT 643
R+ + P+I+KP LWTGKQ+ S L++ + NL K K +
Sbjct: 666 GRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKETPRSVP 725
Query: 644 GNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARM 703
G + +S VIIR EL+CG +DK+ GS + + + +G E + + + LAR+
Sbjct: 726 GFNPDSMCESQVIIREGELLCGVLDKAHYGS-SAYGLVHCCYEIYGGETSGKVLTCLARL 784
Query: 704 -ASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLE-----------SGYSKCDGYILEMEKG 751
+Y + RGF+ G+ D+ K + +++E + + + + +G
Sbjct: 785 FTAYLQLYRGFTLGVEDILVKPKRDVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRG 844
Query: 752 TLQ-CQPGCTMEE--TLEAVMLSELSSIRELAAKACFR-ELH---PTNAPLIMAQSGSKG 804
Q G + ++ E++ KAC LH P N +M QSG+KG
Sbjct: 845 KWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENTLQLMVQSGAKG 904
Query: 805 SNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEF 864
S +N Q+ +GQ L G+ P +SLP FE + P A GFV F TG+ P EF
Sbjct: 905 STVNTMQISCLLGQIELEGRSTPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEF 964
Query: 865 FFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGL 924
FFH M GREGLVDTAVKT+ +GYLQR ++K LE LV+QYD+TVR++ G VVQF YG DGL
Sbjct: 965 FFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1024
Query: 925 D 925
D
Sbjct: 1025 D 1025
Score = 92.7 bits (220), Expect = 7e-18
Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-ASRN 1090
K+QR + EPG AVG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ AS N
Sbjct: 1200 KWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN 1259
Query: 1091 ISTPIITAELMQPYDQEFARRVK 1113
I TP+++ ++ ++ +RVK
Sbjct: 1260 IKTPMMSVPVLN--TKKALKRVK 1280
Score = 49.6 bits (113), Expect = 7e-05
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
R++ ++F + S +++ + ++ IT +L D P+ +G+ D +G C TC
Sbjct: 10 RRLQGISFGMYSAEELKKLS-VKSITNPRYL-DSLGNPSANGLYDLALGPADSKEVCSTC 67
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESL 121
+ C GH G+I+L L V++ F + +L+ C C + P ++
Sbjct: 68 VQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAV 116
>BC067295-1|AAH67295.1| 566|Homo sapiens POLR2A protein protein.
Length = 566
Score = 343 bits (843), Expect = 2e-93
Identities = 214/577 (37%), Positives = 321/577 (55%), Gaps = 45/577 (7%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
R I V F V SP +++ + E K +G R P G++D R G ++ C+TC
Sbjct: 16 RTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGR-PKLGGLMDPRQGVIERTGRCQTC 74
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
+ EC GHFG+I+L PVFHVG+ + +L+ +C C+K+++ + NP
Sbjct: 75 AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSN----------NP 124
Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCPS---CEAINGMVKKSSI----GILKIVHEK-YRAK 184
++ +L K+ + + C CE M K + G + EK +
Sbjct: 125 KIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGC 184
Query: 185 KPTDPIVKKVLMDFH-EAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMN 243
P +++ ++ + E K N++ ++ +SP V +F+RI DE+ +LGM
Sbjct: 185 GRYQPRIRRSGLELYAEWKHVNEDSQ---EKKIL--LSPERVHEIFKRISDEECFVLGME 239
Query: 244 VKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAG 303
+ +RPE +I+T LPVPPL +RP+VV A N+DDLT K ++I+ IN+ + R+ +
Sbjct: 240 PRYARPEWMIVTVLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGA 298
Query: 304 KCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKR 362
+I ED LQ H A +++E+ G+P AMQ +P + L QRLKGK+GR RGNL GKR
Sbjct: 299 AAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKR 358
Query: 363 VDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANY 422
VDFS+RTVI+PDPNL I +VGVP +A +T+ E V P N+ L+ LV G +PGA Y
Sbjct: 359 VDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKY 418
Query: 423 VQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKV 482
+ R + L++ + L+ G VERH+ DGD+V+FNRQP+LHK+S+M HR ++
Sbjct: 419 II-RDNGDRIDLRFHPKPSDLH-LQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRI 476
Query: 483 QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQ 542
P TFR N V TPYNADFDGDEMN+HLPQ+ E RAE + ++ R+
Sbjct: 477 LPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEI--------QELAMVPRM---- 524
Query: 543 NKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTK 579
+VTP++ ++ QD +T T+RD F +
Sbjct: 525 ----IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557
>AC012511-1|AAY24277.1| 922|Homo sapiens unknown protein.
Length = 922
Score = 157 bits (381), Expect = 2e-37
Identities = 76/136 (55%), Positives = 94/136 (69%)
Query: 790 PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARG 849
P N+ +M QSG+KGS +N Q+ +GQ L G+R P +SLP FE + P A G
Sbjct: 92 PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGG 151
Query: 850 FVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRN 909
FV F TG+ P EFFFH M GREGLVDTAVKT+ +GYLQR ++K LE LV+QYD+TVR+
Sbjct: 152 FVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRD 211
Query: 910 ATGEVVQFRYGSDGLD 925
+ G VVQF YG DGLD
Sbjct: 212 SDGSVVQFLYGEDGLD 227
Score = 92.7 bits (220), Expect = 7e-18
Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-ASRN 1090
K+QR + EPG AVG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ AS N
Sbjct: 401 KWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN 460
Query: 1091 ISTPIITAELMQPYDQEFARRVK 1113
I TP+++ ++ ++ +RVK
Sbjct: 461 IKTPMMSVPVLN--TKKALKRVK 481
>U33823-1|AAD09356.1| 441|Homo sapiens DNA-directed RNA polymerase
I largest subunit protein.
Length = 441
Score = 123 bits (297), Expect = 3e-27
Identities = 58/92 (63%), Positives = 68/92 (73%)
Query: 834 SLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLV 893
SLP FE + P A GFV F TG+ P EFFFH M GREGLVDTAVKT+ + YLQR ++
Sbjct: 1 SLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSAYLQRCII 60
Query: 894 KSLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
K LE LV+QYD+TVR++ G VVQF YG DGLD
Sbjct: 61 KHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 92
Score = 92.7 bits (220), Expect = 7e-18
Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-ASRN 1090
K+QR + EPG AVG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ AS N
Sbjct: 267 KWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN 326
Query: 1091 ISTPIITAELMQPYDQEFARRVK 1113
I TP+++ ++ ++ +RVK
Sbjct: 327 IKTPMMSVPVLN--TKKALKRVK 347
>BC017115-1|AAH17115.2| 574|Homo sapiens POLR1A protein protein.
Length = 574
Score = 92.7 bits (220), Expect = 7e-18
Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-ASRN 1090
K+QR + EPG AVG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+ AS N
Sbjct: 53 KWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN 112
Query: 1091 ISTPIITAELMQPYDQEFARRVK 1113
I TP+++ ++ ++ +RVK
Sbjct: 113 IKTPMMSVPVLN--TKKALKRVK 133
>AY091462-1|AAM12032.1| 299|Homo sapiens RNA polymerase III subunit
RPC155-D protein.
Length = 299
Score = 57.6 bits (133), Expect = 2e-07
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1109 ARRVKGRICTSKLKVKPAEVTAVSAWAIKVTG-EPSKSCGWLNMSLQQLGRQLPAVVVKG 1167
A V+ ICTSKL+VKP +V + VT E SKS + LQ L LP VVV+G
Sbjct: 55 AETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSS--MYYVLQFLKEDLPKVVVQG 112
Query: 1168 LPQVSRAVIACDDSSEK 1184
+P+VSRAVI D+ S K
Sbjct: 113 IPEVSRAVIHIDEQSGK 129
>M21610-1|AAA60135.1| 113|Homo sapiens POLR2 protein.
Length = 113
Score = 56.8 bits (131), Expect = 4e-07
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 220 MSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVV 269
+SP V +F+RI DE+ +LG+ + +RPE +I+T LPVPPL +RP+VV
Sbjct: 26 LSPERVHEIFKRISDEECFVLGIEPRYARPESMIVTVLPVPPLSVRPAVV 75
>AK025568-1|BAB15171.1| 495|Homo sapiens protein ( Homo sapiens cDNA:
FLJ21915 fis, clone HEP03920. ).
Length = 495
Score = 52.4 bits (120), Expect = 9e-06
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 3/56 (5%)
Query: 1059 MTLKTFHFAGVASMNITQGVPRVKEIIN-ASRNISTPIITAELMQPYDQEFARRVK 1113
MTL TFHFAG MN+T G+PR++EI+ AS NI TP+++ ++ ++ +RVK
Sbjct: 1 MTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLN--TKKALKRVK 54
>BC014399-1|AAH14399.1| 162|Homo sapiens POLR3A protein protein.
Length = 162
Score = 38.3 bits (85), Expect = 0.16
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 1153 LQQLGRQLPAVVVKGLPQVSRAVIACDDSSEK 1184
LQ L LP VVV+G+P+VSRAVI D+ S K
Sbjct: 5 LQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGK 36
>AF187991-1|AAF04107.1| 706|Homo sapiens zinc finger protein ZNF225
protein.
Length = 706
Score = 35.1 bits (77), Expect = 1.5
Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 25/170 (14%)
Query: 19 TFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGLGLAE 78
+F S I Q H+ N + + + H + +R+ T +K CE CG G +
Sbjct: 184 SFCYSSALRIHQRVHMGEKLYNCDVCGKEFNQSSHQQIHQRIHTGEKPFKCEQCGKGFSR 243
Query: 79 CVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPE----- 133
G + + +L H G + IC++C K + +S + ++R +
Sbjct: 244 RSGLYVHRKL-----HTG-------VKPHICEKCGKAFIHDSQLQEHQRIHTGEKPFKCD 291
Query: 134 ---MSYLLKKNLK--AVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVH 178
S+ + NL ++VH + K F +C +C G+ KS++ ++VH
Sbjct: 292 ICCKSFRSRANLNRHSMVHMREKPF-RCDTCGKSFGL--KSALNSHRMVH 338
>BC108912-1|AAI08913.1| 706|Homo sapiens zinc finger protein 225
protein.
Length = 706
Score = 34.3 bits (75), Expect = 2.7
Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 25/170 (14%)
Query: 19 TFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGLGLAE 78
+F S I Q H+ N + + + H + +R+ T +K CE CG G +
Sbjct: 184 SFCYSSALRIHQRVHMGEKLYNCDVCGKEFNQSSHLQIHQRIHTGEKPFKCEQCGKGFSR 243
Query: 79 CVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPE----- 133
G + + +L H G + IC++C K + +S + ++R +
Sbjct: 244 RSGLYVHRKL-----HTG-------VKPHICEKCGKAFIHDSQLQEHQRIHTGEKPFKCD 291
Query: 134 ---MSYLLKKNLK--AVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVH 178
S+ + NL ++VH + K F +C +C G+ KS++ ++VH
Sbjct: 292 ICCKSFRSRANLNRHSMVHMREKPF-RCDTCGKSFGL--KSALNSHRMVH 338
>AK223477-1|BAD97197.1| 706|Homo sapiens zinc finger protein 225
variant protein.
Length = 706
Score = 34.3 bits (75), Expect = 2.7
Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 25/170 (14%)
Query: 19 TFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGLGLAE 78
+F S I Q H+ N + + + H + +R+ T +K CE CG G +
Sbjct: 184 SFCYSSALRIHQRVHMGEKLYNCDVCGKEFNQSSHLQIHQRIHTGEKPFKCEQCGKGFSR 243
Query: 79 CVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPE----- 133
G + + +L H G + IC++C K + +S + ++R +
Sbjct: 244 RSGLYVHRKL-----HTG-------VKPHICEKCGKAFIHDSQLQEHQRIHTGEKPFKCD 291
Query: 134 ---MSYLLKKNLK--AVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVH 178
S+ + NL ++VH + K F +C +C G+ KS++ ++VH
Sbjct: 292 ICCKSFRSRANLNRHSMVHMREKPF-RCDTCGKSFGL--KSALNSHRMVH 338
>AC074331-1|AAF88105.1| 628|Homo sapiens ZNF225 [amino acids
79-706] protein.
Length = 628
Score = 34.3 bits (75), Expect = 2.7
Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 25/170 (14%)
Query: 19 TFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGLGLAE 78
+F S I Q H+ N + + + H + +R+ T +K CE CG G +
Sbjct: 106 SFCYSSALRIHQRVHMGEKLYNCDVCGKEFNQSSHLQIHQRIHTGEKPFKCEQCGKGFSR 165
Query: 79 CVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPE----- 133
G + + +L H G + IC++C K + +S + ++R +
Sbjct: 166 RSGLYVHRKL-----HTG-------VKPHICEKCGKAFIHDSQLQEHQRIHTGEKPFKCD 213
Query: 134 ---MSYLLKKNLK--AVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVH 178
S+ + NL ++VH + K F +C +C G+ KS++ ++VH
Sbjct: 214 ICCKSFRSRANLNRHSMVHMREKPF-RCDTCGKSFGL--KSALNSHRMVH 260
>AC021092-2|AAF24967.1| 706|Homo sapiens ZNF225 protein.
Length = 706
Score = 34.3 bits (75), Expect = 2.7
Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 25/170 (14%)
Query: 19 TFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGLGLAE 78
+F S I Q H+ N + + + H + +R+ T +K CE CG G +
Sbjct: 184 SFCYSSALRIHQRVHMGEKLYNCDVCGKEFNQSSHLQIHQRIHTGEKPFKCEQCGKGFSR 243
Query: 79 CVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPE----- 133
G + + +L H G + IC++C K + +S + ++R +
Sbjct: 244 RSGLYVHRKL-----HTG-------VKPHICEKCGKAFIHDSQLQEHQRIHTGEKPFKCD 291
Query: 134 ---MSYLLKKNLK--AVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVH 178
S+ + NL ++VH + K F +C +C G+ KS++ ++VH
Sbjct: 292 ICCKSFRSRANLNRHSMVHMREKPF-RCDTCGKSFGL--KSALNSHRMVH 338
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,185,837
Number of Sequences: 224733
Number of extensions: 7353838
Number of successful extensions: 15575
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 15431
Number of HSP's gapped (non-prelim): 99
length of query: 1191
length of database: 73,234,838
effective HSP length: 98
effective length of query: 1093
effective length of database: 51,211,004
effective search space: 55973627372
effective search space used: 55973627372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 71 (32.7 bits)
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