Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000760-TA|BGIBMGA000760-PA|IPR002345|Lipocalin,
IPR006592|RNA polymerase I subunit A, N-terminal, IPR007080|RNA
polymerase Rpb1, domain 1, IPR000722|RNA polymerase, alpha subunit,
IPR007066|RNA polymerase Rpb1, domain 3, IPR007083|RNA polymerase
Rpb1, domain 4, IPR007081|RNA polymerase Rpb1, domain 5
(1191 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,... 1189 0.0
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 565 e-161
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 563 e-160
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr... 352 1e-96
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr... 352 1e-96
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ... 352 1e-96
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p... 32 2.8
Z83241-2|CAB05816.2| 435|Caenorhabditis elegans Hypothetical pr... 31 3.7
Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical pr... 31 6.5
Z81112-6|CAB03277.1| 673|Caenorhabditis elegans Hypothetical pr... 30 8.6
Z77136-10|CAB00887.1| 673|Caenorhabditis elegans Hypothetical p... 30 8.6
>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
class iii (c) protein1 protein.
Length = 1400
Score = 1189 bits (2946), Expect = 0.0
Identities = 609/1143 (53%), Positives = 768/1143 (67%), Gaps = 52/1143 (4%)
Query: 1 MPKEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQ-DGQRVPAPHGVLDRR 59
M KEQ+RE K+ V F ++Q+AH+ + L+ +G+ PA +G LD +
Sbjct: 1 MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK 60
Query: 60 MGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPE 119
MG + K C TCGLGL +CVGHFGY L +PVFH+G+F+ I +LQ ICK C+ ++L
Sbjct: 61 MGVSTKTGTCSTCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP 120
Query: 120 SLKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHE 179
+ + R+ +NP + YL +K L + K S C C NG VKK+ +LKI
Sbjct: 121 EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAF- 179
Query: 180 KYRAKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPL 239
P+ L F SN+EV + ++PL V LF I + DIP+
Sbjct: 180 -------ASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPV 232
Query: 240 LGMNV-KLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARH 298
L + + P DL+LTR+PVPP+CIRPSVVS++KAGT EDD+TMK EI+L NDV+ +H
Sbjct: 233 LMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKH 292
Query: 299 LASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNL 358
+ + E W++LQ+ ALYINSEMSG+P MQPK+ R QRLKGKQGRFRGNL
Sbjct: 293 KRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNL 352
Query: 359 SGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHP 418
GKRVDFS RTVISPDPNL+I +VGVP+HVA LT+PE V +N++ +R+LV NG DVHP
Sbjct: 353 CGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHP 412
Query: 419 GANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCH 478
GANY+ ++ KK LKYG R+++A+ L+ GD +ERHL D DVVLFNRQPSLHK+SIM H
Sbjct: 413 GANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSH 472
Query: 479 RAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRV 538
RAKV P RTFRFNEC CTPYNADFDGDEMN+HLPQT EA+AEA LM
Sbjct: 473 RAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNV----------- 521
Query: 539 SLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLL-AGPDATM 597
K+NL+TPR+GE L+AA QDFITGGYL+T +DTF ++E + AA L+ A
Sbjct: 522 -----KNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQT 576
Query: 598 RIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVII 657
+I +PPPAI +P +LWTGKQ+ LI+RP++ +V NL K K+YTGN +LC +DSYVII
Sbjct: 577 KIRIPPPAIRRPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVII 636
Query: 658 RNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGI 717
RNS L+ G +DKS LGS +K +IFY+L+RD+GE+ AV MWRLARMA ++ NRGFS GI
Sbjct: 637 RNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGI 696
Query: 718 IDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIR 777
DV P ++L+ K +L+++GYSKC YI E+E+G L+ QPGCT EETLE+++L ELS+IR
Sbjct: 697 GDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIR 756
Query: 778 ELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPH 837
+ A + C R L NAPL MA GSKGS INISQMIACVGQQA++G R P+GFE+RSLPH
Sbjct: 757 DHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPH 816
Query: 838 FERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLE 897
FER K P A+GFV NSFY+GLTPTEFFFHTMGGREGLVDTAVKTAETGY+QRRLVK LE
Sbjct: 817 FERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLE 876
Query: 898 DLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKD-RPVDLARVLADVRAKCQDKNAEP 956
DL YD TVR++ G+V++F +G DGLDP ME KD VD VL + Q +P
Sbjct: 877 DLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAK-NIQTTKEQP 935
Query: 957 LDGDGI--VLAAEETL-----------ALDDFKTSTDEFKNELLSFLKATAGRVRALRAR 1003
+ D + VL AE L ++ T T+ K++ KA G +
Sbjct: 936 IPVDKLDEVLKAEIQKKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLK 995
Query: 1004 YAGCGRAALQLER----------LTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIG 1053
+ LE LT TQL F+ +C++K R + EPGTAVGA+AA SIG
Sbjct: 996 TKESCKICKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIG 1055
Query: 1054 EPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVK 1113
EP TQMTLKTFHFAGVASMNITQGVPR+KEIINA + ISTPIITA L+ PYD+ ARRVK
Sbjct: 1056 EPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVK 1115
Query: 1114 GRI 1116
RI
Sbjct: 1116 ARI 1118
Score = 31.9 bits (69), Expect = 2.8
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 1142 PSKSCGWLNMSLQQLGRQLPAVVVKGLPQVSRAVIACDD 1180
PS S M++Q L L VVVKG+P V+R VI D+
Sbjct: 1193 PSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADE 1231
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 565 bits (1395), Expect = e-161
Identities = 344/938 (36%), Positives = 519/938 (55%), Gaps = 68/938 (7%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
R +S V F + P I++ + V ++ ++G+ P G++D R G + C TC
Sbjct: 13 RIVSRVQFGILGPEEIKRMSVAHVEFPEVY-ENGK--PKLGGLMDPRQGVIDRRGRCMTC 69
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
L +C GHFG+++L PVFH+G+ + IL+ +C C ++++ +S P
Sbjct: 70 AGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSA----------P 119
Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIV- 191
+ +LKK + + C + G +K E+ P DP+
Sbjct: 120 RVLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEK----------EEGMPDDPDDPMND 169
Query: 192 -KKVLMDFHEAKESNKEVAAMINSGLVKE-----------MSPLEVLNLFRRIPDEDIPL 239
KKV + S + V IN+ K ++ VL +F++I DEDI +
Sbjct: 170 GKKVAGGCGRYQPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILV 229
Query: 240 LGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHL 299
+GM+ + +RPE +I T LPVPPL +RP+VV+ + N+DDLT K S+I+ N + R+
Sbjct: 230 IGMDPQFARPEWMICTVLPVPPLAVRPAVVT-FGSAKNQDDLTHKLSDIIKTNQQLQRNE 288
Query: 300 ASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNL 358
A+ ++ +D LQ H A +++ + G+P A Q +P + + QRLKGK+GR RGNL
Sbjct: 289 ANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNL 348
Query: 359 SGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHP 418
GKRVDFS+RTVI+ DPNL I VGVP +A+ LT+PE V P N+ L+ LV G +P
Sbjct: 349 MGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYP 408
Query: 419 GANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCH 478
GA ++ G + L+Y R L+ G VERH+ DGD+++FNRQP+LHK+S+M H
Sbjct: 409 GA---KENGARVD--LRYHPRAADLH-LQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGH 462
Query: 479 RAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRV 538
R K+ P TFR N V +PYNADFDGDEMN+HLPQ+ E RAE + ++ R
Sbjct: 463 RVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEI--------EEIAMVPR- 513
Query: 539 SLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMR 598
L+TP+ + ++ QD + ++T+RD F L L T
Sbjct: 514 -------QLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYL-----PTWD 561
Query: 599 IDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIR 658
+P PAI+KP+ LWTGKQ+FSLI+ N + ++ K + D+ VII
Sbjct: 562 GKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIE 621
Query: 659 NSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGII 718
+ EL+ G + T+G + ++ +++ + G E A + + + +++ G + GI
Sbjct: 622 HGELLSGIVCSKTVGK-SAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIG 680
Query: 719 D-VTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIR 777
D + ++ +N + ++ D I + L+ PG T+ +T E + L+ R
Sbjct: 681 DTIADQATYLDIQNTIRKAKQDVVD-VIEKAHNDDLEPTPGNTLRQTFENKVNQILNDAR 739
Query: 778 ELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPH 837
+ + + L N M SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 740 DRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPH 799
Query: 838 FERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLE 897
F + P ++GFVENS+ GLTP+EFFFH MGGREGL+DTAVKTAETGY+QRRL+K++E
Sbjct: 800 FIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAME 859
Query: 898 DLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRP 935
+++ YD TVRN+ ++VQ RYG DGLD ++E ++ P
Sbjct: 860 SVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMP 897
Score = 95.5 bits (227), Expect = 2e-19
Identities = 41/69 (59%), Positives = 55/69 (79%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNI 1091
++Q+ + +PG VGALAAQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN S+ +
Sbjct: 1065 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTL 1124
Query: 1092 STPIITAEL 1100
TP +T L
Sbjct: 1125 KTPSLTVFL 1133
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 563 bits (1390), Expect = e-160
Identities = 340/926 (36%), Positives = 516/926 (55%), Gaps = 44/926 (4%)
Query: 13 RKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETC 72
R +S V F + P I++ + V ++ ++G+ P G++D R G + C TC
Sbjct: 13 RIVSRVQFGILGPEEIKRMSVAHVEFPEVY-ENGK--PKLGGLMDPRQGVIDRRGRCMTC 69
Query: 73 GLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINP 132
L +C GHFG+++L PVFH+G+ + IL+ +C C ++++ +S + I
Sbjct: 70 AGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLE---ILK 126
Query: 133 EMSYLLKKNLKAVVHKKAKTFSKCP-SCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIV 191
+ KK L +++ K S C + E GM + + P
Sbjct: 127 KTGTNSKKRL-TMIYDLCKAKSVCEGAAEKEEGMPDDPD-DPMNDGKKVAGGCGRYQPSY 184
Query: 192 KKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPED 251
++V +D + + N ++ LEV F++I DEDI ++GM+ + +RPE
Sbjct: 185 RRVGIDINAEWKKNVNEDTQERKIMLTAERDLEV---FQQITDEDILVIGMDPQFARPEW 241
Query: 252 LILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQED 311
+I T LPVPPL +RP+VV+ + N+DDLT K S+I+ N + R+ A+ ++ +D
Sbjct: 242 MICTVLPVPPLAVRPAVVT-FGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD 300
Query: 312 WDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTV 370
LQ H A +++ + G+P A Q +P + + QRLKGK+GR RGNL GKRVDFS+RTV
Sbjct: 301 VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV 360
Query: 371 ISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKT 430
I+ DPNL I VGVP +A+ LT+PE V P N+ L+ LV G +PGA ++ G +
Sbjct: 361 ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA---KENGARV 417
Query: 431 KKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRF 490
L+Y R L+ G VERH+ DGD+++FNRQP+LHK+S+M HR K+ P TFR
Sbjct: 418 D--LRYHPRAADLH-LQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRM 474
Query: 491 NECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQNKSNLVTP 550
N V +PYNADFDGDEMN+HLPQ+ E RAE + ++ R L+TP
Sbjct: 475 NLSVTSPYNADFDGDEMNLHLPQSLETRAEI--------EEIAMVPR--------QLITP 518
Query: 551 RNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPR 610
+ + ++ QD + ++T+RD F L L T +P PAI+KP+
Sbjct: 519 QANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYL-----PTWDGKVPQPAILKPK 573
Query: 611 KLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKS 670
LWTGKQ+FSLI+ N + ++ K + D+ VII + EL+ G +
Sbjct: 574 PLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSK 633
Query: 671 TLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIID-VTPGKKLIEA 729
T+G + ++ +++ + G E A + + + +++ G + GI D + ++
Sbjct: 634 TVGK-SAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDI 692
Query: 730 KNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELH 789
+N + ++ D I + L+ PG T+ +T E + L+ R+ + + L
Sbjct: 693 QNTIRKAKQDVVD-VIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLS 751
Query: 790 PTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARG 849
N M SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPHF + P ++G
Sbjct: 752 EFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKG 811
Query: 850 FVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRN 909
FVENS+ GLTP+EFFFH MGGREGL+DTAVKTAETGY+QRRL+K++E +++ YD TVRN
Sbjct: 812 FVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRN 871
Query: 910 ATGEVVQFRYGSDGLDPTYMEGKDRP 935
+ ++VQ RYG DGLD ++E ++ P
Sbjct: 872 SLAQMVQLRYGEDGLDGMWVENQNMP 897
Score = 95.5 bits (227), Expect = 2e-19
Identities = 41/69 (59%), Positives = 55/69 (79%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNI 1091
++Q+ + +PG VGALAAQS+GEP TQMTL TFH+AGV++ N+T GVPR+KEIIN S+ +
Sbjct: 1075 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTL 1134
Query: 1092 STPIITAEL 1100
TP +T L
Sbjct: 1135 KTPSLTVFL 1143
>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 352 bits (865), Expect = 1e-96
Identities = 251/735 (34%), Positives = 376/735 (51%), Gaps = 79/735 (10%)
Query: 250 EDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIA------RHLASAG 303
+ L L R+ VPP RP + K ED T+ ++L + I+ + SA
Sbjct: 351 DGLFLERILVPPKKFRP--IRMFKGAQYEDPQTLNLRKVLEATETISAISLIMKGDTSAQ 408
Query: 304 KCELIQEDWDYLQLHAAL---YINSEMSGIPLAMQPKKPG-----RGLVQRLKGKQGRFR 355
ELI ++A + Y+ ++ + Q G G+ Q L+ KQG FR
Sbjct: 409 LKELIANRVRGKTINAQMHDAYLQLQLRANAIFDQDLNKGDRDSIAGIKQILEKKQGLFR 468
Query: 356 GNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPD 415
++ GKRV+F+ R+VI+PDP L I E+G+P AK LT+ E V N+ ++ L+ GP
Sbjct: 469 MHMMGKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPH 528
Query: 416 VHPGANY-VQQRGLKTK---KYLKYGNREKIAQELKCGDV--------VERHLVDGDVVL 463
HPGAN+ V+ G KT K + R ++A+ L V RH+ +GD+++
Sbjct: 529 QHPGANFFVEPSGKKTMLGDKPEEKKRRMQMAKTLNAATTENLRQTPKVLRHMKNGDMIM 588
Query: 464 FNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEAL 522
NRQPSLHK SI+ HRA+V QR R N C YNADFDGDEMN HL Q+ A+ E
Sbjct: 589 MNRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTE-- 646
Query: 523 ILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEA 582
V I V SN + P++ L+ QD + G L++ RD F K +
Sbjct: 647 ---------VREIANVG-----SNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDF 692
Query: 583 QQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNY 642
L A + RI++PPP I+ P++LWTGKQ+ + I++ N + K + GK
Sbjct: 693 MHLVLASFA--QYSKRIEIPPPTILYPKRLWTGKQVITTIVK-NCIPDGKPLINLDGKAK 749
Query: 643 T----------GNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEY 692
T + +S+V+ R EL+ G +DK+ G+ T+ + + +G
Sbjct: 750 TPLSCWIVPGFDAPQFDMSESHVVFRQGELLVGVLDKAHFGA-TQFGLAHCAFELYGHRC 808
Query: 693 AVRGMWRLARMASYYMMNRGFSFGIIDV-----TPGKK---LIEAK---NKLLESGYSKC 741
V+ + +R+ + Y+ GF+ G+ D+ GK+ ++E++ N+++++ +
Sbjct: 809 GVQLLSCFSRLFTTYLQFHGFTLGVADILVVKDADGKRKEAVMESRTIGNQVVKTAFGLP 868
Query: 742 DGYILEMEKGTLQ---CQPGC--TMEETLEAVMLSELSSIRELAAKAC----FRELHPTN 792
D K TL C P T + L+ M ++ + K+C L P N
Sbjct: 869 DTATPAEIKRTLAATYCNPRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPTGLLRLFPQN 928
Query: 793 APLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVE 852
A +M QSG+KGS +N Q+ C+GQ L GKR+ R+LP F P A G+++
Sbjct: 929 ALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYID 988
Query: 853 NSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATG 912
F TG+ P E FFHTM GREGL+DTAVKT+ +GYLQR ++K LE + + YD TVR+ G
Sbjct: 989 QRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDG 1048
Query: 913 EVVQFRYGSDGLDPT 927
V+QFRYG DG+D T
Sbjct: 1049 SVIQFRYGEDGMDTT 1063
Score = 84.6 bits (200), Expect = 4e-16
Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 1027 RVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEII- 1085
R + K R + +PG VG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+
Sbjct: 1218 RTLYWKGMRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM 1277
Query: 1086 NASRNISTP 1094
AS++I+TP
Sbjct: 1278 TASKSIATP 1286
Score = 44.0 bits (99), Expect = 7e-04
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 50 PAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTIC 109
P G+ D +G + C TC C GH G+IQL +PVF+ F+ +L+ C
Sbjct: 48 PIAGGLYDPILGPDNTFDMCMTCNQYERHCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSC 107
Query: 110 KECAKV 115
C ++
Sbjct: 108 VHCHRL 113
>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 352 bits (865), Expect = 1e-96
Identities = 251/735 (34%), Positives = 376/735 (51%), Gaps = 79/735 (10%)
Query: 250 EDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIA------RHLASAG 303
+ L L R+ VPP RP + K ED T+ ++L + I+ + SA
Sbjct: 351 DGLFLERILVPPKKFRP--IRMFKGAQYEDPQTLNLRKVLEATETISAISLIMKGDTSAQ 408
Query: 304 KCELIQEDWDYLQLHAAL---YINSEMSGIPLAMQPKKPG-----RGLVQRLKGKQGRFR 355
ELI ++A + Y+ ++ + Q G G+ Q L+ KQG FR
Sbjct: 409 LKELIANRVRGKTINAQMHDAYLQLQLRANAIFDQDLNKGDRDSIAGIKQILEKKQGLFR 468
Query: 356 GNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPD 415
++ GKRV+F+ R+VI+PDP L I E+G+P AK LT+ E V N+ ++ L+ GP
Sbjct: 469 MHMMGKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPH 528
Query: 416 VHPGANY-VQQRGLKTK---KYLKYGNREKIAQELKCGDV--------VERHLVDGDVVL 463
HPGAN+ V+ G KT K + R ++A+ L V RH+ +GD+++
Sbjct: 529 QHPGANFFVEPSGKKTMLGDKPEEKKRRMQMAKTLNAATTENLRQTPKVLRHMKNGDMIM 588
Query: 464 FNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEAL 522
NRQPSLHK SI+ HRA+V QR R N C YNADFDGDEMN HL Q+ A+ E
Sbjct: 589 MNRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTE-- 646
Query: 523 ILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEA 582
V I V SN + P++ L+ QD + G L++ RD F K +
Sbjct: 647 ---------VREIANVG-----SNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDF 692
Query: 583 QQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNY 642
L A + RI++PPP I+ P++LWTGKQ+ + I++ N + K + GK
Sbjct: 693 MHLVLASFA--QYSKRIEIPPPTILYPKRLWTGKQVITTIVK-NCIPDGKPLINLDGKAK 749
Query: 643 T----------GNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEY 692
T + +S+V+ R EL+ G +DK+ G+ T+ + + +G
Sbjct: 750 TPLSCWIVPGFDAPQFDMSESHVVFRQGELLVGVLDKAHFGA-TQFGLAHCAFELYGHRC 808
Query: 693 AVRGMWRLARMASYYMMNRGFSFGIIDV-----TPGKK---LIEAK---NKLLESGYSKC 741
V+ + +R+ + Y+ GF+ G+ D+ GK+ ++E++ N+++++ +
Sbjct: 809 GVQLLSCFSRLFTTYLQFHGFTLGVADILVVKDADGKRKEAVMESRTIGNQVVKTAFGLP 868
Query: 742 DGYILEMEKGTLQ---CQPGC--TMEETLEAVMLSELSSIRELAAKAC----FRELHPTN 792
D K TL C P T + L+ M ++ + K+C L P N
Sbjct: 869 DTATPAEIKRTLAATYCNPRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPTGLLRLFPQN 928
Query: 793 APLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVE 852
A +M QSG+KGS +N Q+ C+GQ L GKR+ R+LP F P A G+++
Sbjct: 929 ALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYID 988
Query: 853 NSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATG 912
F TG+ P E FFHTM GREGL+DTAVKT+ +GYLQR ++K LE + + YD TVR+ G
Sbjct: 989 QRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDG 1048
Query: 913 EVVQFRYGSDGLDPT 927
V+QFRYG DG+D T
Sbjct: 1049 SVIQFRYGEDGMDTT 1063
Score = 84.6 bits (200), Expect = 4e-16
Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 1027 RVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEII- 1085
R + K R + +PG VG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+
Sbjct: 1218 RTLYWKGMRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM 1277
Query: 1086 NASRNISTP 1094
AS++I+TP
Sbjct: 1278 TASKSIATP 1286
Score = 44.0 bits (99), Expect = 7e-04
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 50 PAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTIC 109
P G+ D +G + C TC C GH G+IQL +PVF+ F+ +L+ C
Sbjct: 48 PIAGGLYDPILGPDNTFDMCMTCNQYERHCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSC 107
Query: 110 KECAKV 115
C ++
Sbjct: 108 VHCHRL 113
>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 352 bits (865), Expect = 1e-96
Identities = 251/735 (34%), Positives = 376/735 (51%), Gaps = 79/735 (10%)
Query: 250 EDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIA------RHLASAG 303
+ L L R+ VPP RP + K ED T+ ++L + I+ + SA
Sbjct: 351 DGLFLERILVPPKKFRP--IRMFKGAQYEDPQTLNLRKVLEATETISAISLIMKGDTSAQ 408
Query: 304 KCELIQEDWDYLQLHAAL---YINSEMSGIPLAMQPKKPG-----RGLVQRLKGKQGRFR 355
ELI ++A + Y+ ++ + Q G G+ Q L+ KQG FR
Sbjct: 409 LKELIANRVRGKTINAQMHDAYLQLQLRANAIFDQDLNKGDRDSIAGIKQILEKKQGLFR 468
Query: 356 GNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPD 415
++ GKRV+F+ R+VI+PDP L I E+G+P AK LT+ E V N+ ++ L+ GP
Sbjct: 469 MHMMGKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPH 528
Query: 416 VHPGANY-VQQRGLKTK---KYLKYGNREKIAQELKCGDV--------VERHLVDGDVVL 463
HPGAN+ V+ G KT K + R ++A+ L V RH+ +GD+++
Sbjct: 529 QHPGANFFVEPSGKKTMLGDKPEEKKRRMQMAKTLNAATTENLRQTPKVLRHMKNGDMIM 588
Query: 464 FNRQPSLHKLSIMCHRAKVQP-QRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEAL 522
NRQPSLHK SI+ HRA+V QR R N C YNADFDGDEMN HL Q+ A+ E
Sbjct: 589 MNRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTE-- 646
Query: 523 ILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEA 582
V I V SN + P++ L+ QD + G L++ RD F K +
Sbjct: 647 ---------VREIANVG-----SNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDF 692
Query: 583 QQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNY 642
L A + RI++PPP I+ P++LWTGKQ+ + I++ N + K + GK
Sbjct: 693 MHLVLASFA--QYSKRIEIPPPTILYPKRLWTGKQVITTIVK-NCIPDGKPLINLDGKAK 749
Query: 643 T----------GNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEY 692
T + +S+V+ R EL+ G +DK+ G+ T+ + + +G
Sbjct: 750 TPLSCWIVPGFDAPQFDMSESHVVFRQGELLVGVLDKAHFGA-TQFGLAHCAFELYGHRC 808
Query: 693 AVRGMWRLARMASYYMMNRGFSFGIIDV-----TPGKK---LIEAK---NKLLESGYSKC 741
V+ + +R+ + Y+ GF+ G+ D+ GK+ ++E++ N+++++ +
Sbjct: 809 GVQLLSCFSRLFTTYLQFHGFTLGVADILVVKDADGKRKEAVMESRTIGNQVVKTAFGLP 868
Query: 742 DGYILEMEKGTLQ---CQPGC--TMEETLEAVMLSELSSIRELAAKAC----FRELHPTN 792
D K TL C P T + L+ M ++ + K+C L P N
Sbjct: 869 DTATPAEIKRTLAATYCNPRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPTGLLRLFPQN 928
Query: 793 APLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVE 852
A +M QSG+KGS +N Q+ C+GQ L GKR+ R+LP F P A G+++
Sbjct: 929 ALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYID 988
Query: 853 NSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATG 912
F TG+ P E FFHTM GREGL+DTAVKT+ +GYLQR ++K LE + + YD TVR+ G
Sbjct: 989 QRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDG 1048
Query: 913 EVVQFRYGSDGLDPT 927
V+QFRYG DG+D T
Sbjct: 1049 SVIQFRYGEDGMDTT 1063
Score = 84.6 bits (200), Expect = 4e-16
Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 1027 RVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEII- 1085
R + K R + +PG VG LAAQSIGEP TQMTL TFHFAG MN+T G+PR++EI+
Sbjct: 1218 RTLYWKGMRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM 1277
Query: 1086 NASRNISTP 1094
AS++I+TP
Sbjct: 1278 TASKSIATP 1286
Score = 44.0 bits (99), Expect = 7e-04
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 50 PAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTIC 109
P G+ D +G + C TC C GH G+IQL +PVF+ F+ +L+ C
Sbjct: 48 PIAGGLYDPILGPDNTFDMCMTCNQYERHCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSC 107
Query: 110 KECAKV 115
C ++
Sbjct: 108 VHCHRL 113
>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
protein C28H8.3 protein.
Length = 1714
Score = 31.9 bits (69), Expect = 2.8
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 714 SFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSEL 773
S +I+ G +NK ++ G S E + +QCQ T+ E L+ +MLS
Sbjct: 838 SKALINQVCGSVYARFRNKSMKRGISLFGTLTQEYSQNAMQCQVLITVPECLQELMLSRT 897
Query: 774 SSIRELAAK---ACFRELHPTNA 793
++++ + F E+H A
Sbjct: 898 PAVQKFVSHIKYVVFDEVHSIGA 920
>Z83241-2|CAB05816.2| 435|Caenorhabditis elegans Hypothetical
protein T25C8.1 protein.
Length = 435
Score = 31.5 bits (68), Expect = 3.7
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 393 TYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVV 452
TY PA L+ + + C D+HPG GL T +L Y N E + + CG ++
Sbjct: 113 TYSSTELPAFLKTIPKWECG--DLHPGF------GLVTLAFLNYSNPEFLTNFIHCGTIM 164
Query: 453 E 453
+
Sbjct: 165 D 165
>Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical
protein C17E4.2 protein.
Length = 819
Score = 30.7 bits (66), Expect = 6.5
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 138 LKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKKVLMD 197
L++ K +V+KK +K + ++K + I ++ E K + + +L D
Sbjct: 430 LERFTKLLVNKKFNEKTKAAKINPQSKEIEKRDVEIARLEDELRVTKMESGKDMAALLRD 489
Query: 198 FHEAKESNKEVAAMINSGLVKEMSPLEVLNLF 229
F + S+KE M+ G K++ LE N F
Sbjct: 490 FEKFAISDKESKRMV-EGCKKKIEELEEQNRF 520
>Z81112-6|CAB03277.1| 673|Caenorhabditis elegans Hypothetical
protein ZC376.3 protein.
Length = 673
Score = 30.3 bits (65), Expect = 8.6
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 268 VVSDIKAGTNEDDLTMKQSE-ILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSE 326
+VS +K D T +Q E +LL ++ + L S K EL++E W ++ + I
Sbjct: 559 IVSHMKGVATGPDKTFEQFEKMLLEREMFLKTLKSERKLELLKEKWRKIR-NGGGRIVER 617
Query: 327 MSGIPLAMQP-KKPGRGLVQRL 347
P+ M+ KK RG V L
Sbjct: 618 AGNAPMEMRDGKKGSRGGVSLL 639
>Z77136-10|CAB00887.1| 673|Caenorhabditis elegans Hypothetical
protein ZC376.3 protein.
Length = 673
Score = 30.3 bits (65), Expect = 8.6
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 268 VVSDIKAGTNEDDLTMKQSE-ILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSE 326
+VS +K D T +Q E +LL ++ + L S K EL++E W ++ + I
Sbjct: 559 IVSHMKGVATGPDKTFEQFEKMLLEREMFLKTLKSERKLELLKEKWRKIR-NGGGRIVER 617
Query: 327 MSGIPLAMQP-KKPGRGLVQRL 347
P+ M+ KK RG V L
Sbjct: 618 AGNAPMEMRDGKKGSRGGVSLL 639
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,977,783
Number of Sequences: 27539
Number of extensions: 1248607
Number of successful extensions: 2741
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2688
Number of HSP's gapped (non-prelim): 32
length of query: 1191
length of database: 12,573,161
effective HSP length: 90
effective length of query: 1101
effective length of database: 10,094,651
effective search space: 11114210751
effective search space used: 11114210751
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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