GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000760-TA|BGIBMGA000760-PA|IPR002345|Lipocalin,
IPR006592|RNA polymerase I subunit A, N-terminal, IPR007080|RNA
polymerase Rpb1, domain 1, IPR000722|RNA polymerase, alpha subunit,
IPR007066|RNA polymerase Rpb1, domain 3, IPR007083|RNA polymerase
Rpb1, domain 4, IPR007081|RNA polymerase Rpb1, domain 5
         (1191 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...   161   2e-41
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    27   0.91 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   6.4  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score =  161 bits (392), Expect = 2e-41
 Identities = 105/303 (34%), Positives = 156/303 (51%), Gaps = 8/303 (2%)

Query: 562 DFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSL 621
           D +T    +T+RD F  K   +Q+   L+  P    +  MP P I+KP+ LWTGKQI SL
Sbjct: 1   DTLTAVRKMTKRDVFIEK---EQMMNILMFLPSWDGK--MPQPCILKPKPLWTGKQISSL 55

Query: 622 IMRPNRRCEVKANLETKGKNYTGN-KDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSI 680
           I+ P     ++ +     +   G  K +   D+ V++ + ELV G + K TLG+    S+
Sbjct: 56  II-PGNVNMIRTHSTXPXEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSA-GSL 113

Query: 681 FYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSK 740
            +I + + G E   R    +  + + +++  G S GI D     +      K ++     
Sbjct: 114 LHICMLELGHEVCGRFYGNIQTVXNNWLLLEGHSIGIGDTIADPQTYLEIQKXIKKAKED 173

Query: 741 CDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQS 800
               I +     L+  PG T+ +T E  +   L+  R+    +  + L   N    M  S
Sbjct: 174 VIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVS 233

Query: 801 GSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLT 860
           GSKGSNINISQ+IACVGQQ + GKR+P GF  R+LPHF +    P +RGFVENS+  GLT
Sbjct: 234 GSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLT 293

Query: 861 PTE 863
           P+E
Sbjct: 294 PSE 296


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 266 PSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQL 317
           P+ V +  + T E  L  +  + +     IA+H  +  K E ++EDW Y+ +
Sbjct: 493 PAYVHEDVSPTFEKPLVREIEKTIDDARFIAQHAKNKDKFESVEEDWKYVAM 544


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 181 YRAKKPTDPIVKKV--LMDFHEAKESNKEVAAMINSGLVKEMSPLE 224
           Y    PT  I++K   L+D  +  E N +    + +GL    +PL+
Sbjct: 104 YNVAVPTKSILEKKPELVDATDPGEHNGDTVTDVEAGLASRTNPLD 149


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 326,686
Number of Sequences: 429
Number of extensions: 13995
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 3
length of query: 1191
length of database: 140,377
effective HSP length: 65
effective length of query: 1126
effective length of database: 112,492
effective search space: 126665992
effective search space used: 126665992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)