Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000760-TA|BGIBMGA000760-PA|IPR002345|Lipocalin,
IPR006592|RNA polymerase I subunit A, N-terminal, IPR007080|RNA
polymerase Rpb1, domain 1, IPR000722|RNA polymerase, alpha subunit,
IPR007066|RNA polymerase Rpb1, domain 3, IPR007083|RNA polymerase
Rpb1, domain 4, IPR007081|RNA polymerase Rpb1, domain 5
(1191 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 618 e-177
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s... 493 e-139
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot... 322 9e-88
At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subun... 149 8e-36
At2g40030.1 68415.m04919 DNA-directed RNA polymerase alpha subun... 126 7e-29
At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A (... 33 1.1
At2g27240.1 68415.m03273 expressed protein contains Pfam profile... 33 1.5
At3g58220.1 68416.m06491 meprin and TRAF homology domain-contain... 31 3.5
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co... 31 4.6
At3g48270.1 68416.m05268 cytochrome P450 71A26, putative (CYP71A... 31 6.1
At2g22800.1 68415.m02706 homeobox-leucine zipper protein 9 (HAT9... 31 6.1
At3g58580.1 68416.m06529 endonuclease/exonuclease/phosphatase fa... 30 8.1
At1g63000.1 68414.m07114 expressed protein 30 8.1
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 618 bits (1526), Expect = e-177
Identities = 366/929 (39%), Positives = 534/929 (57%), Gaps = 51/929 (5%)
Query: 14 KISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCG 73
K+ V F + SP I+Q + I V + G+ P G+ D R+GT + CETC
Sbjct: 14 KVRVVQFGILSPDEIRQMSVIHVEHSET-TEKGK--PKVGGLSDTRLGTIDRKVKCETCM 70
Query: 74 LGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRR--KFIN 131
+AEC GHFGY++L P++HVG+ + +++I++ +C C+K++ E + +R+ K N
Sbjct: 71 ANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRSLFRQAMKIKN 130
Query: 132 PEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIV 191
P+ LKK L A +K +KC + I+ + S+ +K A++P I
Sbjct: 131 PKNR--LKKILDACKNK-----TKCDGGDDIDDVQSHSTDEPVKKSRGGCGAQQPKLTIE 183
Query: 192 -KKVLMDFHEAKESNKEVAAMINSGLVKE-MSPLEVLNLFRRIPDEDIPLLGMNVKLSRP 249
K++ ++ ++ N E + K+ + VL++ +RI D D LLG N K +RP
Sbjct: 184 GMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFARP 243
Query: 250 EDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQ 309
+ +IL LP+PP +RPSV+ D + +EDDLT + + I+ N+ + R + +I
Sbjct: 244 DWMILEVLPIPPPPVRPSVMMDATS-RSEDDLTHQLAMIIRHNENLKRQEKNGAPAHIIS 302
Query: 310 EDWDYLQLHAALYINSEMSGIPLAMQPK-KPGRGLVQRLKGKQGRFRGNLSGKRVDFSSR 368
E LQ H A Y ++E+ G P A Q +P + + RLK K+GR RGNL GKRVDFS+R
Sbjct: 303 EFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 362
Query: 369 TVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPG---ANYV-Q 424
TVI+PDP + I E+GVP +A LTYPE V P N++ L+ LV GP PG A Y+ +
Sbjct: 363 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIR 422
Query: 425 QRGLKTK-KYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQ 483
G + +YLK + Q L+ G VERHL DGD VLFNRQPSLHK+SIM HR ++
Sbjct: 423 DDGQRLDLRYLKKSSD----QHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIM 478
Query: 484 PQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIRVSLEQN 543
P TFR N V +PYNADFDGDEMNMH+PQ+ E RAE L LM
Sbjct: 479 PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELM----------------MV 522
Query: 544 KSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPP 603
+V+P+ ++ QD + G IT+RDTF K L+ D ++ P
Sbjct: 523 PKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN---TLMWWEDFDGKV--PA 577
Query: 604 PAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELV 663
PAI+KPR LWTGKQ+F+LI+ ++ + TG + D+ V I EL+
Sbjct: 578 PAILKPRPLWTGKQVFNLII--PKQINLLRYSAWHADTETG--FITPGDTQVRIERGELL 633
Query: 664 CGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPG 723
G++ K TLG+ + S+ +++ + G + A + + + +Y+++ GF+ GI D
Sbjct: 634 AGTLCKKTLGT-SNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDTIAD 692
Query: 724 KKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKA 783
+E N+ + + + I + + L +PG TM +T E + L+ R+ A +
Sbjct: 693 SSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARDDAGSS 752
Query: 784 CFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSK 843
+ L TN M +GSKGS INISQM ACVGQQ + GKR+P GF+ R+LPHF +
Sbjct: 753 AQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDY 812
Query: 844 IPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQY 903
P +RGFVENS+ GLTP EFFFH MGGREGL+DTAVKT+ETGY+QRRLVK++ED++++Y
Sbjct: 813 GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKY 872
Query: 904 DMTVRNATGEVVQFRYGSDGLDPTYMEGK 932
D TVRN+ G+V+QF YG DG+D ++E +
Sbjct: 873 DGTVRNSLGDVIQFLYGEDGMDAVWIESQ 901
Score = 87.0 bits (206), Expect = 7e-17
Identities = 36/69 (52%), Positives = 53/69 (76%)
Query: 1032 KYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNI 1091
++ + ++ PG +G +AAQSIGEP TQMTL TFH+AGV++ N+T GVPR++EIIN ++ I
Sbjct: 1073 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRI 1132
Query: 1092 STPIITAEL 1100
TP ++ L
Sbjct: 1133 KTPSLSVYL 1141
>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
similar to SP|P04051 DNA-directed RNA polymerase III
largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
contains InterPro accession IPR000722: RNA polymerase,
alpha subunit
Length = 1328
Score = 493 bits (1216), Expect = e-139
Identities = 272/558 (48%), Positives = 354/558 (63%), Gaps = 41/558 (7%)
Query: 574 DTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKA 633
DTF+ ++ + + + G D+ ID+P P I+KP +LWTGKQIFS+++RPN V
Sbjct: 525 DTFYDRAAFSLICSYMGDGMDS---IDLPTPTILKPIELWTGKQIFSVLLRPNASIRVYV 581
Query: 634 NLETKGKNYTG-----NKDLCVQDSYVIIRNSELVCGSMDKSTL-------GSGTKSSIF 681
L K KN+ ++ +C+ D +V RNSEL+ G + K+TL G+G K ++
Sbjct: 582 TLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGKATLALDIFPLGNGNKDGLY 641
Query: 682 YILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKC 741
ILLRD+ A M RLA++++ ++ GFS GI DV PG++L + + ++ GY +C
Sbjct: 642 SILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQC 701
Query: 742 DGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSG 801
I E +G LQ + G ++LEA + L++IRE KAC LH N+PLIM+Q G
Sbjct: 702 HRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCG 761
Query: 802 SKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTP 861
SKGS INISQM+ACVGQQ +NG R P+GF DRSLPHF R SK PAA+GFV NSFY+GLT
Sbjct: 762 SKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTA 821
Query: 862 TEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGS 921
TEFFFHTMGGREGLVDTAVKTA TGY+ RRL+K+LEDL++ YD TVRNA+G ++QF YG
Sbjct: 822 TEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGD 881
Query: 922 DGLDPTYMEGKD-RPVDLARVLADVRAKCQDKNAEP-LDGDGIVLAAEETLAL-DDFKTS 978
DG+DP MEGKD P++ R+ V+A C ++ L + + EE L D +
Sbjct: 882 DGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEELVRHDKSRVC 941
Query: 979 TDEFKNELLSFLKATAGRVRALRARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQRGVI 1038
TD F L F V L + A + + +T QL
Sbjct: 942 TDAFVKSLREF-------VSLLGVKSASPPQVLYKASGVTDKQL---------------- 978
Query: 1039 EPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIITA 1098
E GTA+G + AQSIGEPGTQMTLKTFHFAGVASMNITQGVPR+ EIINAS+NISTP+I+A
Sbjct: 979 EAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKNISTPVISA 1038
Query: 1099 ELMQPYDQEFARRVKGRI 1116
EL P + AR VKGRI
Sbjct: 1039 ELENPLELTSARWVKGRI 1056
Score = 421 bits (1038), Expect = e-117
Identities = 242/532 (45%), Positives = 329/532 (61%), Gaps = 26/532 (4%)
Query: 3 KEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGT 62
K+ Y E KI + F+V S + ++A ++V N+ L D P +G+LD RMG
Sbjct: 11 KKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVW--NIGLYDHSFKPYENGLLDPRMGP 68
Query: 63 NQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLK 122
K + C TC C GH+GY++L LPV++VGYF I+ IL+ ICK C+ ++L E L
Sbjct: 69 PNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEKLY 128
Query: 123 KSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSK-----CPSCEAINGMVKKSSIGI-LKI 176
+ + RK NP M L K L V KK T + C C +NGMVKK + + I
Sbjct: 129 EDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFGIGI 188
Query: 177 VHEKYRAKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDED 236
H++ + I + + A K+ A IN L + P VL LF+R+ D+D
Sbjct: 189 SHDRSK-------IHGGEIDECKSAISHTKQSTAAINP-LTYVLDPNLVLGLFKRMSDKD 240
Query: 237 IPLLGMNVKLSRPEDLILTRLPVPPLCIRPSV-VSDIKAGTNEDDLTMKQSEILLINDVI 295
LL + RPE+LI+T + VPPL IRPSV + I++ NE+DLT + +I+L N +
Sbjct: 241 CELLYIAY---RPENLIITCMLVPPLSIRPSVMIGGIQS--NENDLTARLKQIILGNASL 295
Query: 296 ARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKK-PGRGLVQRLKGKQGRF 354
+ L+ + WD +Q+ A YINSE+ G QP++ P G++QRLKGK GRF
Sbjct: 296 HKILSQPTSSPKNMQVWDTVQIEVARYINSEVRGCQ--NQPEEHPLSGILQRLKGKGGRF 353
Query: 355 RGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGP 414
R NLSGKRV+F+ RTVISPDPNL+I EVG+P+ +A+ILT+PE V N++ LR+ V NGP
Sbjct: 354 RANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGP 413
Query: 415 DVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLS 474
+ +PGA V+ + + L R++IA EL G +V+RHL +GDVVLFNRQPSLH++S
Sbjct: 414 NKYPGARNVRYPD-GSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMS 472
Query: 475 IMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMG 526
IMCHRA++ P RT RFNE VC PYNADFDGDEMNMH+PQTEEAR EA+ LMG
Sbjct: 473 IMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMG 524
>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
similar to SP|O35134 DNA-directed RNA polymerase I
largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
subunit) (RPA194) {Mus musculus}; contains InterPro
accession IPR000722: RNA polymerase, alpha subunit
Length = 1670
Score = 322 bits (791), Expect = 9e-88
Identities = 255/818 (31%), Positives = 388/818 (47%), Gaps = 121/818 (14%)
Query: 200 EAKESNKEVAAMINSGLVK-EMSPLEVLNLFRRIPDEDIPLLGMNVKL--SRPEDL---- 252
E +E + EVAA K ++ P EV N+ + + + L S E +
Sbjct: 281 ETREKSTEVAAEFEEHNSKRDLLPSEVRNILKHLWQNEHEFCSFIGDLWQSGSEKIDYSM 340
Query: 253 -ILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQED 311
L + VPP RP E T+ ++++ N+++ + +
Sbjct: 341 FFLESVLVPPTKFRPPTTGG--DSVMEHPQTVGLNKVIESNNILGNACTNKLDQSKVIFR 398
Query: 312 WDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVI 371
W LQ + +S+ + + Q ++ G+ Q L+ K+G FR + GKRV+ + R+VI
Sbjct: 399 WRNLQESVNVLFDSKTATV----QSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVI 454
Query: 372 SPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTK 431
SPDP + + ++G+P A LTYPERV P N++ LR + NGPD+HPGA + + K
Sbjct: 455 SPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMK 514
Query: 432 KYLKYGNREKIAQEL------------KC-----GDVVERHLVDGDVVLFNRQPSLHKLS 474
R IA++L C G V RH+ DGD+VL NRQP+LHK S
Sbjct: 515 LPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPS 574
Query: 475 IMCHRAKV-QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVT 533
+M H+ +V + ++T R + C+ YNADFDGDEMN+H PQ E +RAEA ++ ++N
Sbjct: 575 LMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANN---- 630
Query: 534 VIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLA------- 586
P NGE L A QD I L+T+RDTF K QL
Sbjct: 631 ------------QYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTD 678
Query: 587 ------------ACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRR------ 628
+++ DA + PAI+KP LWTGKQ+ + ++ +
Sbjct: 679 MVLSTFSGRSGKKVMVSASDAELLT--VTPAILKPVPLWTGKQVITAVLNQITKGHPPFT 736
Query: 629 -------------C---EVKANLE--TKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKS 670
C EVK N TK K + + + + IR +E VCG +DK+
Sbjct: 737 VEKATKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKA 796
Query: 671 TLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAK 730
+ + + +G A + +R+ + ++ GF+ G+ D+ K + E +
Sbjct: 797 QFAD---YGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEER 853
Query: 731 NKLLESGYSKCDGYILEMEKGT---LQCQPGCTMEETLEAVML----SELSSI------- 776
K L+ +L G +Q P M +E ++ S L+S+
Sbjct: 854 TKQLQE-CENVGERVLRKTFGIDVDVQIDPQ-DMRSRIERILYEDGESALASLDRSIVNY 911
Query: 777 -RELAAKACFRELHPT--------NAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVP 827
+ ++K +L N +M SG+KGS +N Q+ + +GQQ L GKRVP
Sbjct: 912 LNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVP 971
Query: 828 NGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGY 887
++LP F P A GF+ + F +GL P E++FH M GREGLVDTAVKT+ +GY
Sbjct: 972 RMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1031
Query: 888 LQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLD 925
LQR L+K+LE L + YD TVR+A G ++QF+YG DG+D
Sbjct: 1032 LQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVD 1069
Score = 89.8 bits (213), Expect = 9e-18
Identities = 43/92 (46%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 1026 LRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEII 1085
L++ K+ + +PG VG LAAQS+GEP TQMTL TFH AG MN+T G+PR++EI+
Sbjct: 1140 LKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1199
Query: 1086 -NASRNISTPIITAELMQPYDQEFARRVKGRI 1116
A+ NI TPI+T L++ +E A + R+
Sbjct: 1200 MTAAANIKTPIMTCPLLKGKTKEDANDITDRL 1231
Score = 58.8 bits (136), Expect = 2e-08
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 15 ISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGL 74
+ V F+ + +++ + ++V + L D P P G+ D ++G C +CG
Sbjct: 27 VESVRFSFMTEQDVRKHSFLKVTSP--ILHDNVGNPFPGGLYDLKLGPKDDKQACNSCGQ 84
Query: 75 GLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVML-PESLKKSYRRKFINPE 133
C GH G+I+L P++H F + LQ C C M PE ++++ + + +
Sbjct: 85 LKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLKLIIK 144
Query: 134 MSYLLKKNLKAVVHKKAKTFSKCPSCEAI 162
+ K L++ K+K S SCE++
Sbjct: 145 GDIVSAKQLESNTPTKSK--SSDESCESV 171
>At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subunit
family protein low similarity to RNA polymerase IIA
largest subunit [Trypanosoma brucei] GI:162215; contains
InterPro accession IPR000722: RNA polymerase, alpha
subunit
Length = 1453
Score = 149 bits (362), Expect = 8e-36
Identities = 170/616 (27%), Positives = 282/616 (45%), Gaps = 111/616 (18%)
Query: 358 LSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVH 417
L GKR D + RTV+ DP+L++ E+G+P +AK L E + N + RLV
Sbjct: 313 LLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKE---RLV------- 362
Query: 418 PGANYVQQRGLKTKKYLKYGNREKIAQ--ELKCGDVVERHLVDGDVVLFNRQPSLHKLSI 475
++V + +++ G+R Q +L+ GD + R L+DGD VL NR PS+H+ S+
Sbjct: 363 --TSFVPTLLDNKEMHVRRGDRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSL 420
Query: 476 MCHRAKVQPQRT-FRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTV 534
+ ++ P + N C P+ DFDGD ++ ++PQ+ +A+ E L
Sbjct: 421 IAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDEL---------- 470
Query: 535 IIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLI-TQRDTFFTKSEAQQLAACLLAGP 593
V+L++ L+ +NG L++ QD +T YL+ +++ + +++ QQL
Sbjct: 471 ---VALDK---QLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQL-------- 516
Query: 594 DATMRIDMPPPAIIK-----PRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDL 648
+PPPAIIK WTG Q+F ++ P G +YT
Sbjct: 517 QMYCPFQLPPPAIIKASPSSTEPQWTGMQLFGMLFPP-------------GFDYT----- 558
Query: 649 CVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYM 708
+ V++ N EL+ S + L G + I +L D G+ + ++ M S ++
Sbjct: 559 -YPLNNVVVSNGELLSFSEGSAWLRDGEGNFIERLLKHDKGKVLDI--IYSAQEMLSQWL 615
Query: 709 MNRGFSFGIIDVTPGKKLIEAKNKLLESGY------SKCDGYILEME--KGTLQCQPGCT 760
+ RG S + D+ L KN E Y C+ L +E + L
Sbjct: 616 LMRGLSVSLADLYLSSDLQSRKNLTEEISYGLREAEQVCNKQQLMVESWRDFLAVNGEDK 675
Query: 761 MEETL-----------EAVMLSELS------SIRELAAKACFRELHPTNAPLIMAQSGSK 803
E+++ ++ LSEL+ + R++ A A +R +N+ LIM+++GSK
Sbjct: 676 EEDSVSDLARFCYERQKSATLSELAVSAFKDAYRDVQALA-YRYGDQSNSFLIMSKAGSK 734
Query: 804 GSNINISQMIACVGQQALNGKRVPNGF--EDRSLPHFERHSKIPAAR------------- 848
G+ + Q C+G Q + + GF E + +S + A+
Sbjct: 735 GNIGKLVQHSMCIGLQN-SAVSLSFGFPRELTCAAWNDPNSPLRGAKGKDSTTTESYVPY 793
Query: 849 GFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVR 908
G +ENSF TGL P E F H++ R+ + G L RRL+ + D+ YD TVR
Sbjct: 794 GVIENSFLTGLNPLESFVHSVTSRDS--SFSGNADLPGTLSRRLMFFMRDIYAAYDGTVR 851
Query: 909 NATG-EVVQFRYGSDG 923
N+ G ++VQF Y +DG
Sbjct: 852 NSFGNQLVQFTYETDG 867
Score = 47.2 bits (107), Expect = 7e-05
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 49 VPAPHGVLDRRMGTNQKDANCETCG-LGLAECVGHFGYIQLTLPVFHVGYFRAIITILQT 107
V AP+ V D R+G D+ C TCG C GHFG I + + + + + +L
Sbjct: 36 VEAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNK 95
Query: 108 ICKEC 112
IC C
Sbjct: 96 ICPGC 100
>At2g40030.1 68415.m04919 DNA-directed RNA polymerase alpha subunit
family protein contains InterPro accession IPR000722:
RNA polymerase, alpha subunit
Length = 888
Score = 126 bits (305), Expect = 7e-29
Identities = 120/415 (28%), Positives = 191/415 (46%), Gaps = 45/415 (10%)
Query: 224 EVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTM 283
EV + RRIP+E L + + E IL LPVPP C+ SD + + D +
Sbjct: 130 EVKEILRRIPEESRKKLTAKGHIPQ-EGYILEYLPVPPNCLSVPEASDGFSTMSVDPSRI 188
Query: 284 KQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGL 343
+ ++L VIA + +G+ + ++ + ++ G A + G+
Sbjct: 189 ELKDVL--KKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAKAARNIDMRYGV 246
Query: 344 VQ-----RLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERV 398
+ K + R K FSSR+VI+ D + EVG+P+ +A+ +T+ ERV
Sbjct: 247 SKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERV 306
Query: 399 FPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVD 458
N +L++LV D +Y Q T L+ G++ ELK G VV R ++D
Sbjct: 307 SVHNRGYLQKLV----DDKLCLSYTQG---STTYSLRDGSKGHT--ELKPGQVVHRRVMD 357
Query: 459 GDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEAR 518
GDVV NR P+ HK S+ R V T + N +C+P +ADFDGD +++ PQ+ A+
Sbjct: 358 GDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAK 417
Query: 519 AEALILMGSHNTAVTVIIRVSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFT 578
AE + L S+E+ L++ G+L++ D + ++ +R F
Sbjct: 418 AEVMELF-------------SVEK---QLLSSHTGQLILQMGSDSLLSLRVMLER-VFLD 460
Query: 579 KSEAQQLAACLLAGPDATMRIDMPPPAIIKPRK---LWTGKQIFSLIMRPNRRCE 630
K+ AQQLA + G + +PPPA+ K K WT QI L C+
Sbjct: 461 KATAQQLA---MYG-----SLSLPPPALRKSSKSGPAWTVFQILQLAFPERLSCK 507
Score = 56.4 bits (130), Expect = 1e-07
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 849 GFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVR 908
G V+ F+ GL P E H++ RE +V ++ AE G L + L+ L D+V+ D TVR
Sbjct: 690 GIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVR 749
Query: 909 N-ATGEVVQFRYGSD 922
N + V+QF+YG D
Sbjct: 750 NTCSNSVIQFKYGVD 764
>At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A
(RPN10) identical to multiubiquitin chain binding
protein (MBP1) SP:P55034, GI:1165206
Length = 386
Score = 33.1 bits (72), Expect = 1.1
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 932 KDRPVDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTS--TDEFKNELLSF 989
KD+ D A + A+ DKNAEP+D D +L +++ D S DE ++ L+
Sbjct: 255 KDKDGDTASASQETVARTTDKNAEPMDEDSALLDQAIAMSVGDVNMSEAADEDQDLALAL 314
Query: 990 LKATAG 995
+ +G
Sbjct: 315 QMSMSG 320
>At2g27240.1 68415.m03273 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 506
Score = 32.7 bits (71), Expect = 1.5
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 197 DFH--EAKESNKEVAAMINSGLVKEMSPLEVLNLFRRI 232
D H AK + K + ++NSG++KE+ PLE+++L I
Sbjct: 361 DLHVQNAKSACKSLTNLLNSGILKEVEPLELVSLLTAI 398
>At3g58220.1 68416.m06491 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 487
Score = 31.5 bits (68), Expect = 3.5
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 931 GKDRPVDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDF 975
GK R +L L + + KC D+ A VLAA +L LDDF
Sbjct: 442 GKTRIQELEEELKEFKQKCLDREALLEKEKAKVLAARASLTLDDF 486
>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
contains Pfam profile PF00856: SET domain
Length = 1423
Score = 31.1 bits (67), Expect = 4.6
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 916 QFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNA-EPLDGDGIVLAAEETLAL 972
Q Y SD E K RP+ LA ++ R KC D N EP+ G + E L++
Sbjct: 289 QHGYVSDAALIRDGENKLRPITLASLIGVWRVKCGDANCDEPVTGVNFISEVSEELSV 346
>At3g48270.1 68416.m05268 cytochrome P450 71A26, putative (CYP71A26)
identical to Cytochrome P450 71A26 (SP:Q9STK7)
{Arabidopsis thaliana}
Length = 489
Score = 30.7 bits (66), Expect = 6.1
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 173 ILKIVHEKYRAKKPTDPIVKKVLMDFHE-AKESNKEVAAMINSGLVKEMSPLEVLNLFRR 231
+LK H++ A +P I +K+L D H+ A E + S V + +++ FR
Sbjct: 87 VLK-THDRVFASRPRSKIFEKLLYDKHDVASAPYGEYWRQMKSVCVLHLFSNKMVRSFRE 145
Query: 232 IPDEDIPLLGMNVK--LSRPEDL--ILTRLPVPPLC 263
+ +E+I L+ ++ +S P +L IL L +C
Sbjct: 146 VREEEISLMMEKIRKSISLPVNLSKILVSLTNDVIC 181
>At2g22800.1 68415.m02706 homeobox-leucine zipper protein 9 (HAT9) /
HD-ZIP protein 9 identical to GB:U09341
Length = 274
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 138 LKKNLKAVVHKKAKTFSKCPSCEAING 164
LK +H A T +KCPSCE I G
Sbjct: 201 LKLTQPFYMHMPASTLTKCPSCERIGG 227
>At3g58580.1 68416.m06529 endonuclease/exonuclease/phosphatase
family protein similar to SP|P31384 Glucose-repressible
alcohol dehydrogenase transcriptional effector (Carbon
catabolite repressor protein 4) {Saccharomyces
cerevisiae}; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 605
Score = 30.3 bits (65), Expect = 8.1
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 497 PYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTV-IIRVSLEQNKSNLVTPRNGEL 555
P + D D +N+ P T+ L L+ ++++ V I+ + LEQ++ + N L
Sbjct: 481 PMHPDLAVDPLNILRPHTK--LTHQLPLVSAYSSFVRKGIMGLGLEQHRRRIDLNTNEPL 538
Query: 556 LIAATQDFI-TGGYLITQRDTFFTKS 580
T+DFI T Y+ DT +S
Sbjct: 539 FTNCTRDFIGTHDYIFYTADTLMVES 564
>At1g63000.1 68414.m07114 expressed protein
Length = 301
Score = 30.3 bits (65), Expect = 8.1
Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 1/156 (0%)
Query: 479 RAKVQPQRTFRFNECVCT-PYNADFDGDEMNMHLPQTEEARAEALILMGSHNTAVTVIIR 537
+ K + + E VCT D N T+ AR E ++ + + T + ++
Sbjct: 146 KTKAMVEELLKNYENVCTLRVRMPISSDLTNPRNFITKIARYEKVVDIPNSMTILDELLP 205
Query: 538 VSLEQNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATM 597
+S+E K NL N + + I Y +F K+ + A ++ P +
Sbjct: 206 ISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNN 265
Query: 598 RIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKA 633
+D P + + + + PN++ EVKA
Sbjct: 266 ELDATKLKTEFPELMSIKESLIKFVFEPNKKTEVKA 301
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,788,607
Number of Sequences: 28952
Number of extensions: 1191940
Number of successful extensions: 2684
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2634
Number of HSP's gapped (non-prelim): 33
length of query: 1191
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1102
effective length of database: 9,493,832
effective search space: 10462202864
effective search space used: 10462202864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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