GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000759-TA|BGIBMGA000759-PA|undefined
         (76 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    24   2.8  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    23   3.7  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    23   3.7  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    23   4.9  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    23   4.9  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      23   6.4  

>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 35 RYWAAAIVISSPLFYKIHKMSNSP-EN--VSKWAEIRRKE 71
          ++W     +SS L +  ++ SNSP EN  V K +EI  K+
Sbjct: 19 QHWRKRSAVSSSLEFSSYEESNSPIENTEVLKVSEIEAKK 58


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)

Query: 32  WLWRYWAAAIV 42
           W W YW  AIV
Sbjct: 204 WPWTYWTTAIV 214


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 46  PLFYKIHKMSNSPENVSKWAEIRRKE 71
           P   +I +  + P NV K AEI+R+E
Sbjct: 376 PEIRRIARHRHLPTNVKKAAEIKREE 401


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 470

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 45 SPLFYKIHKMSNSPENVSKWAEIRRKEA 72
          +P  + IHK+S S   V+ W +   K+A
Sbjct: 47 NPSKFPIHKLSVSFPEVNSWEKDTNKDA 74


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)

Query: 3   DAPGRPMKFPYTFS 16
           D P RPM  PYT S
Sbjct: 606 DVPERPMSTPYTAS 619


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 2   SDAPGRPMKFPYTFSAKIAQFPYKFYLQN 30
           +D P  P   PYTF   +  + Y  Y+ N
Sbjct: 447 NDVPAIPPNVPYTF---VDPYTYACYINN 472


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.132    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,929
Number of Sequences: 5004
Number of extensions: 13009
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 6
length of query: 76
length of database: 2,362,478
effective HSP length: 56
effective length of query: 20
effective length of database: 2,082,254
effective search space: 41645080
effective search space used: 41645080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 45 (22.2 bits)