GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000759-TA|BGIBMGA000759-PA|undefined
         (76 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446...    28   1.1  
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204...    27   2.5  
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549...    26   3.4  
11_06_0405 + 23183366-23185558                                         25   7.8  
03_05_0821 - 27960414-27961253                                         25   7.8  
02_02_0644 + 12593913-12595154                                         25   7.8  
01_06_1675 + 39078774-39078890,39079607-39079723,39079950-390800...    25   7.8  

>03_03_0186 +
           15243150-15243563,15243685-15243777,15244604-15244666,
           15245028-15245114,15245197-15245349,15245422-15245579,
           15246458-15246692,15246782-15246892,15246942-15246968,
           15247269-15248327,15248432-15248692,15249011-15249196,
           15249642-15250793,15250886-15251236,15251343-15251738
          Length = 1581

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 57  SPENVSKWAEIRRKEAAE 74
           +PE + KW +I+RKEA E
Sbjct: 225 NPELIKKWTKIKRKEAKE 242


>11_06_0223 -
           21419128-21419397,21419493-21419747,21420243-21420414,
           21420530-21420757,21420916-21421049,21421309-21421392,
           21421554-21421760,21421871-21422203,21422343-21422449,
           21422823-21422988,21423127-21423230,21423347-21423507,
           21423595-21424495,21424642-21424732,21424837-21425127,
           21425491-21425575,21425665-21425747,21427653-21427773,
           21427785-21428260
          Length = 1422

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 6/34 (17%)

Query: 32  WLWRYWAAAIVISSPLFYKIHKMSNSPENVSKWA 65
           W+W YWA      SP+ Y    +S +    S+WA
Sbjct: 743 WIWGYWA------SPMMYSQQAISINEFLASRWA 770


>07_03_0635 +
           20151861-20152249,20152589-20152709,20154914-20154996,
           20155819-20155903,20155987-20156277,20156555-20156645,
           20157380-20158280,20158401-20158561,20158759-20158862,
           20159040-20159205,20159283-20159378,20159694-20159800,
           20160443-20160775,20161393-20161599,20161774-20161857,
           20162887-20163020,20163166-20163393,20163541-20163712,
           20164301-20164555,20164647-20164919
          Length = 1426

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 6/34 (17%)

Query: 32  WLWRYWAAAIVISSPLFYKIHKMSNSPENVSKWA 65
           W+W YW      +SP+ Y  + +S +    S+WA
Sbjct: 714 WIWGYW------TSPMMYSNNALSVNEFLASRWA 741


>11_06_0405 + 23183366-23185558
          Length = 730

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 34  WRYWAAAIVISSPLF--YKIHKMSNSPENVSK 63
           WR   A  ++S+ ++  + +H++S SP+  SK
Sbjct: 331 WRMLLAGSLVSAVMYLGFVVHRLSKSPDTDSK 362


>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 18  KIAQFPYKFYLQNLWLWRYWAA 39
           +IAQF + F    + LWR++AA
Sbjct: 211 QIAQFLFSFAASAVMLWRHFAA 232


>02_02_0644 + 12593913-12595154
          Length = 413

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 34  WRYWAAAIVISSP-LFYKIHKMSNSPENVSKW 64
           +RYW AAIV   P L +  + M+     + KW
Sbjct: 153 YRYWVAAIVSGKPNLMFWSNNMNEWAPPMLKW 184


>01_06_1675 +
           39078774-39078890,39079607-39079723,39079950-39080006,
           39080340-39080417,39080553-39080597,39080872-39080931,
           39081149-39081271,39081850-39081927,39082056-39082125,
           39082612-39082719,39082962-39083095,39083177-39083247,
           39083384-39083432,39083507-39083557
          Length = 385

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 13  YTFSAKIAQFPYKFYLQNLWLWRYWA 38
           Y   A  +QF    YLQNL+L+ Y A
Sbjct: 209 YNEKALKSQFDTSIYLQNLFLYGYGA 234


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.132    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,524
Number of Sequences: 37544
Number of extensions: 77988
Number of successful extensions: 204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 8
length of query: 76
length of database: 14,793,348
effective HSP length: 55
effective length of query: 21
effective length of database: 12,728,428
effective search space: 267296988
effective search space used: 267296988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)