GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000759-TA|BGIBMGA000759-PA|undefined
         (76 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)              28   1.2  
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)                   26   3.8  
SB_57379| Best HMM Match : SCP (HMM E-Value=5.8e-19)                   25   6.6  
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.6  
SB_3124| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   6.6  

>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
          Length = 479

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 5   PGRPMKFPYTFSAKIAQFPYKFYLQNLWLWRYWAAAIVISSP 46
           PG P   P+  + K +   + F     W W Y+ A+  +  P
Sbjct: 183 PGMPAAQPFVHAFKESNAAWNFCPAGKWSWEYYDASAEVPPP 224


>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
          Length = 807

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 12  PYTFSAKIAQFPYKFYLQNLWLWRYWAAAIVISSP 46
           P+  + K +   + F     W W Y+ A +VI  P
Sbjct: 411 PFVHAFKESNAAWNFCPDGKWSWEYFDATVVIPPP 445


>SB_57379| Best HMM Match : SCP (HMM E-Value=5.8e-19)
          Length = 168

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 37  WAAAIVISSPLFYKIHKMSNSPENVSKWAEIRRKEAAEH 75
           WA  +   + L ++IH+ S+  EN++  +    KEA E+
Sbjct: 62  WANKLSSGAVLPWEIHESSSDGENIAYLSSPTCKEAVEY 100


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 43  ISSPLFYKIHKMSNSPENVS 62
           I   L  K+HK+SNS +N++
Sbjct: 260 IKKELILKLHKLSNSQDNIT 279


>SB_3124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)

Query: 16  SAKIAQFPYKFYLQNLWLWRYWAAAI 41
           + ++A F  KF+L +++LW+ +  AI
Sbjct: 315 NTQLADFLRKFFLYHIYLWQNYLQAI 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.132    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,982
Number of Sequences: 59808
Number of extensions: 81955
Number of successful extensions: 251
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 5
length of query: 76
length of database: 16,821,457
effective HSP length: 54
effective length of query: 22
effective length of database: 13,591,825
effective search space: 299020150
effective search space used: 299020150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)