GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000759-TA|BGIBMGA000759-PA|undefined
         (76 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical pr...    27   1.6  
AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical ...    27   1.6  
Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z68880-8|CAJ43445.1|  883|Caenorhabditis elegans Hypothetical pr...    26   3.7  
Z68880-7|CAA93095.1|  870|Caenorhabditis elegans Hypothetical pr...    26   3.7  
Z92829-8|CAB07342.1|  324|Caenorhabditis elegans Hypothetical pr...    25   4.8  
AC006733-8|AAF60490.1|  600|Caenorhabditis elegans Hypothetical ...    25   6.4  

>U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical
           protein F31E8.5 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 35  RYWAA---AIVISSPLFYKIHKMSNSPEN 60
           +YWA      +I   L  K+H +S SPEN
Sbjct: 139 KYWARNRLEFIIDDQLISKVHVLSKSPEN 167


>AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical
          protein C24D10.4 protein.
          Length = 233

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 2  SDAPGRPMKFPYTFSAKIAQF 22
          S+ PG P +FP  F A IAQF
Sbjct: 79 SEFPGFPSEFPAGFPADIAQF 99


>Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical
           protein M01G12.9 protein.
          Length = 272

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 25  KFYLQNLWLWRYWAAAIVISSPLFY--KIHKMSNSPENVSKWAEIRRKE 71
           K++L+N   W YW +     + L    +  K    P+ ++K  E +R+E
Sbjct: 207 KYHLENSSCWFYWQSVFGNCNTLIVGSRTGKQDQDPKTLTKTRERQREE 255


>Z68880-8|CAJ43445.1|  883|Caenorhabditis elegans Hypothetical
           protein T14G10.5b protein.
          Length = 883

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 42  VISSPLFYKIHKMSNSPENVSKWA-EIRRKEAAEHH 76
           + SS +   IH M  S E V +WA E++   ++++H
Sbjct: 164 ISSSAIVSSIHLMRKSSEVVRRWANEVQEAVSSDNH 199


>Z68880-7|CAA93095.1|  870|Caenorhabditis elegans Hypothetical
           protein T14G10.5a protein.
          Length = 870

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 42  VISSPLFYKIHKMSNSPENVSKWA-EIRRKEAAEHH 76
           + SS +   IH M  S E V +WA E++   ++++H
Sbjct: 151 ISSSAIVSSIHLMRKSSEVVRRWANEVQEAVSSDNH 186


>Z92829-8|CAB07342.1|  324|Caenorhabditis elegans Hypothetical
           protein F10A3.8 protein.
          Length = 324

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 22  FPYKFYLQNLWLWRYWAAAIVISSPLFYKIHKMSNSPENVSK---WAEIRRKEAAEHH 76
           FP K    ++    +W   +++++ +++ ++ + N P  +       EIR++   E H
Sbjct: 122 FPVKLVRFSVRNLPFWILLVILNASVWFLLNSLVNGPSEIQDAILIPEIRQRACLERH 179


>AC006733-8|AAF60490.1|  600|Caenorhabditis elegans Hypothetical
           protein Y32H12A.7 protein.
          Length = 600

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 29  QNLWLWRYWAAAIVISSPLFYKIHKMSNSPENV 61
           +NLW WRY   ++  S P F K+ + +++  ++
Sbjct: 117 ENLW-WRYLLWSLQHSGPTFIKLGQWASTRRDI 148


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.132    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,199
Number of Sequences: 27539
Number of extensions: 64606
Number of successful extensions: 214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 7
length of query: 76
length of database: 12,573,161
effective HSP length: 56
effective length of query: 20
effective length of database: 11,030,977
effective search space: 220619540
effective search space used: 220619540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 51 (24.6 bits)