GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000759-TA|BGIBMGA000759-PA|undefined
         (76 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   2.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   6.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   6.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 2.3
 Identities = 7/32 (21%), Positives = 16/32 (50%)

Query: 36  YWAAAIVISSPLFYKIHKMSNSPENVSKWAEI 67
           +  A+ V+S+ L    H  +     +S+W ++
Sbjct: 303 FMVASSVVSTILILNYHHRNADTHEMSEWVKV 334


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 26  FYLQNLWLW 34
           +Y+ +LW W
Sbjct: 276 YYVMSLWYW 284


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl
          cyclase beta-3 protein.
          Length = 832

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 63 KWAEIRRKEAAE 74
          +W EIRR+ + E
Sbjct: 21 RWEEIRRQASVE 32


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.132    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,398
Number of Sequences: 429
Number of extensions: 805
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 76
length of database: 140,377
effective HSP length: 46
effective length of query: 30
effective length of database: 120,643
effective search space:  3619290
effective search space used:  3619290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.7 bits)
S2: 36 (18.6 bits)