GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000758-TA|BGIBMGA000758-PA|IPR009050|Globin-like,
IPR002052|N-6 Adenine-specific DNA methylase
         (215 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   5.6  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   7.4  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   7.4  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   9.8  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 41  LTENILFDENWQLSQFWYDEKTVHSLVKVIDKVLDDRGK 79
           LT  ++F E   L + W  EK     ++ +   +D+R K
Sbjct: 459 LTAIVIFSERPALIEGWKVEKIQEIYLEALRAYVDNRRK 497


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 21  FYAEQSKRQEILVKLEADKKLTENILFDENWQLSQ 55
           F A  +K+  + ++++ DK+   N +     +LSQ
Sbjct: 368 FSANSTKKLIVKIRIDIDKEDERNEIISSALKLSQ 402


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
          transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 1  MEADEDVPTLSAETF 15
          +EADE+ P L + +F
Sbjct: 48 VEADEEAPVLKSRSF 62


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 44  NILFDENWQLSQFWYDEKTVHSLVKVIDKVLDDRGKVALIS 84
           N+L D  W+ +  WY       +++ +  V+       L++
Sbjct: 77  NVLTDIIWKTTVAWYAGNVACKVIRFLQVVVTYASTYVLVA 117


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,454
Number of Sequences: 317
Number of extensions: 2485
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 215
length of database: 114,650
effective HSP length: 54
effective length of query: 161
effective length of database: 97,532
effective search space: 15702652
effective search space used: 15702652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)