Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000758-TA|BGIBMGA000758-PA|IPR009050|Globin-like,
IPR002052|N-6 Adenine-specific DNA methylase
(215 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1140 + 30699054-30699533,30699627-30699708,30700265-30700428 164 6e-41
02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005... 30 1.6
07_01_0305 - 2181727-2184793,2185635-2185945 29 2.9
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187... 29 2.9
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945... 29 3.8
04_01_0143 + 1659380-1659535,1659641-1659917,1660372-1660453,166... 29 3.8
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 28 5.0
04_01_0063 - 630345-633743 28 5.0
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 28 6.6
10_01_0152 - 1754113-1754286,1754396-1754551,1755273-1756194,175... 27 8.8
06_03_0784 - 24557089-24557198,24557296-24560725 27 8.8
01_02_0098 - 11087875-11089110,11091744-11092022 27 8.8
>03_05_1140 + 30699054-30699533,30699627-30699708,30700265-30700428
Length = 241
Score = 164 bits (398), Expect = 6e-41
Identities = 86/214 (40%), Positives = 130/214 (60%), Gaps = 13/214 (6%)
Query: 4 DEDVPTLSAETFAALQEFYAEQSKRQEILVKLEADKKLTENILFDENWQLSQFWYDEKTV 63
++D P LSA AL+EF EQ + E ++ L E+W+LSQFWYDE+T
Sbjct: 17 EDDRPQLSAAAAEALREFLLEQGRDGGE----EGEEGGGGVELVAEDWRLSQFWYDERTA 72
Query: 64 HSLVKVIDKVLDDRGK-----VALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDY 118
+L + + +++ G VA ++CPTL+ LK D T LLEYD RF +G D+
Sbjct: 73 RALAEEVARLVSLSGPASSAAVACVACPTLYTYLKTSSPDV-TAQLLEYDVRFGQYGGDF 131
Query: 119 IFYDYNNPKEVPPDVHHSYDLVVADPPFLSEECITKTSETIKLLSKDK---IILCTGTIM 175
FYDYN P+E+P + H+Y +VVADPP+LS+EC+ K ++T+ L+ + ++L TG +
Sbjct: 132 TFYDYNQPEELPAAMKHAYRIVVADPPYLSKECLEKVAKTVSFLAHPEGSFLLLLTGEVQ 191
Query: 176 KDIVKELLDLKLCEFQPKHRNNLANEFSCYANFD 209
+D ELL+++ C F+P+H N L NEF + N+D
Sbjct: 192 RDRAFELLNVRPCGFKPQHSNKLGNEFRLFTNYD 225
>02_04_0597 - 24198112-24198462,24199249-24199389,24200322-24200537,
24200626-24201561,24201655-24201816,24202026-24202304,
24202399-24203171,24206142-24207363
Length = 1359
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 25 QSKRQEILVKLEADKKLTENILFDENWQLSQF 56
+S++ E +VKL ADKK + L + QLSQF
Sbjct: 1156 RSEKDEQIVKLTADKKNLHDRLHEAETQLSQF 1187
>07_01_0305 - 2181727-2184793,2185635-2185945
Length = 1125
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 16 AALQEFYAEQSKRQEILVKLEADKKLTENILFDENWQ-LSQFWYDEKTVH 64
A L YA ++ +E L L + ++ DEN Q + FWY++ VH
Sbjct: 511 AFLHVLYANPNRNREELQGLCDSLHDSHGLMLDENMQQILMFWYNDLPVH 560
>01_06_0006 -
25517892-25517935,25518156-25518276,25518598-25518733,
25519189-25519280,25519358-25519426,25519710-25519821,
25519897-25520015,25520302-25520355,25520811-25520891,
25520968-25521051,25521124-25521315,25521633-25521746,
25521832-25521978,25522066-25522302,25522762-25522810,
25522894-25523027,25523124-25523324,25523532-25523701,
25523773-25523875,25524198-25524361,25525015-25525055,
25525144-25525187
Length = 835
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 136 SYDLVVADPPFLSEECITKTSETIKLLSKDKIILCTGTIMKDIVKELLDL-KLC 188
S+D V+ D + + TK + +K LS+ + ++ TGT +++ + E L LC
Sbjct: 337 SWDYVILDEGHVLKNPNTKNAAALKSLSRGQTVVLTGTPVQNNLSEFHSLMSLC 390
>04_04_0217 -
23693124-23693535,23693965-23694052,23694428-23694503,
23694729-23694787,23694853-23694934,23695533-23696577,
23696700-23696998
Length = 686
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 7 VPTLSAETF---AALQEFYAEQSKRQEILVKLEADKKLTENI 45
+PT E F AAL EF E Q +L K + +KKL + I
Sbjct: 57 LPTRDQEQFDKTAALTEFLQEHRLEQTVLFKRKKEKKLEQTI 98
>04_01_0143 +
1659380-1659535,1659641-1659917,1660372-1660453,
1660562-1660688,1660785-1660876,1661023-1661311,
1662130-1662141
Length = 344
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 61 KTVHSLVKVIDKVLDDRGKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDYIF 120
K+ L+ + + +LD+ G +A IS P R + + G+V L+ + YI+
Sbjct: 36 KSADPLISIDEILLDEHGSMAQISVPKKLEKQFRPLLNEGSVYLITNTTAVDARRKTYIY 95
Query: 121 YDYN 124
N
Sbjct: 96 QHQN 99
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 14 TFAALQEFYAEQSKR---QEILVKLEADKKLTENILFDENWQLS 54
TF Q+F+ ++R ++LEA K E L D+ W+LS
Sbjct: 507 TFREYQDFHDSHARRTTENNFRIQLEAKKHRLEKELKDQEWRLS 550
>04_01_0063 - 630345-633743
Length = 1132
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 113 VHGPDYIFYDYNNPKEVPPDVHHSYDLVVADPPFLSEECITKTSETIKLLSKDKIILCTG 172
V G D + + KE+PPDV H + F + C K T+ L++ + T
Sbjct: 477 VAGTDCFRVESGDMKEIPPDVRHLFIRSNDQTKFAEKICKLKKLRTLILITTFGGLGITI 536
Query: 173 TIMKDIVKELLDLKL 187
++ ++K+L L++
Sbjct: 537 EELEAMLKKLKKLRV 551
>06_03_0783 -
24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 108 DRRFEVHGPDYIFYDYNNPKEVPPDVHHSYDLVVADPPFLSEECITKTSETIKLLSKDKI 167
D F + D + P+E+PP V H ++A+ L C + T+ + +KD+
Sbjct: 555 DLAFHTSNGECYRLDVDEPEEIPPAVRHL--SILAERIDLLCTCKLQRLRTLIIWNKDRC 612
Query: 168 ILCTGTIMKDIVKELLDLKLCE 189
+ + KE L+L +
Sbjct: 613 FCPRVCVEANFFKEFKSLRLLD 634
>10_01_0152 -
1754113-1754286,1754396-1754551,1755273-1756194,
1756364-1756414,1757540-1757946,1758918-1759067,
1759178-1759333,1760175-1761041
Length = 960
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 54 SQFWYDEKTVHSLVKVIDKVLDDRGKVALIS 84
S+ +YDEKT + + +++V++ R ALIS
Sbjct: 76 SEGYYDEKTELAFIMFMERVMELRDPAALIS 106
>06_03_0784 - 24557089-24557198,24557296-24560725
Length = 1179
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 122 DYNNPKEVPPDVHHSYDLVVADPPFLSEECITKTSETIKLLSKDKIILCTGTIMKDIVKE 181
D + P+E+PP V H ++A+ L C + T+ + +K + + D+ KE
Sbjct: 534 DVDEPEEIPPAVRHL--SILAERVDLLCVCKLQRLRTLIIWNKVRCFCPRVCVDADLFKE 591
Query: 182 LLDLKLCE 189
L L+L +
Sbjct: 592 LKGLRLLD 599
>01_02_0098 - 11087875-11089110,11091744-11092022
Length = 504
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 14 TFAALQEFYAEQSKRQEILVKLEADKKLTENILFDENWQLSQFWYDEKTVHSLVKVIDKV 73
TF EFY E+SK E L + KK+ + Q W EK V+ +K +
Sbjct: 385 TFCIFAEFYLEKSKMNEALQVWKDAKKMVK----------GQDWVPEKLVNRYLKHFEDS 434
Query: 74 LDDRGKVALISC 85
D G C
Sbjct: 435 KDVDGMETFCEC 446
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.137 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,299,480
Number of Sequences: 37544
Number of extensions: 258565
Number of successful extensions: 536
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 13
length of query: 215
length of database: 14,793,348
effective HSP length: 79
effective length of query: 136
effective length of database: 11,827,372
effective search space: 1608522592
effective search space used: 1608522592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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