GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000758-TA|BGIBMGA000758-PA|IPR009050|Globin-like,
IPR002052|N-6 Adenine-specific DNA methylase
         (215 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              32   0.31 
SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)             28   5.1  
SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)                    28   5.1  
SB_46401| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_8627| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.0  
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)                      27   9.0  

>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 76  DRGKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDYIFYDYNNPKEVPPDVHH 135
           DR  V +++ P +      +I DR  V + + D  + +H P  +++  +     PP V+H
Sbjct: 531 DRKNVIVVNRPPMIYHPPPEIYDRPDVVVHQPD--YVIHRPSVVYHQPSVVVHRPPIVYH 588

Query: 136 SYDLVVADPPFLSEECITKTSET 158
              +V   PP +  + +  + +T
Sbjct: 589 QPPVVFHQPPPMVRQPVMHSHDT 611



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 64  HSLVKVIDKVLDDRGKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDYIFYDY 123
           +S  K  DK   D+    ++  P +      +I DR  V +   D    VH P  +++  
Sbjct: 680 NSTAKKSDK--GDKKNTVIVQRPPMIYHPPPEIYDRPDVVVHRPD--LVVHRPSIVYHQP 735

Query: 124 NNPKEVPPDVHHSYDLVVADPPFLSEECITKTSET 158
           +     PP ++H   ++   PP L  + +  + ET
Sbjct: 736 SVVVHRPPIIYHQPPVMFHQPPPLVHQPVLHSHET 770


>SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)
          Length = 576

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 96  IGDRGTVTLLEYDRRFEVHGPDYI--FYDYNNPKEVPPDVHHSYDL 139
           +G R  ++L+  D RF+     YI  ++DYN+ K+  P    SY +
Sbjct: 456 VGIRYQLSLMRGDIRFKPDSAKYIPVYFDYNSSKKEVPKFLSSYTI 501


>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
          Length = 475

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 120 FYDYNNPKEVPPDVHHSY 137
           F D+  PK+ PP +HHSY
Sbjct: 65  FSDFPIPKDYPPFMHHSY 82


>SB_46401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 114 HGPDYIFYDYNNPKEVPPDVHHSYDLVVADPPFLSE 149
           +G D++   Y+NPK   P+V  SY      P F+++
Sbjct: 413 NGMDFVLSYYDNPKVTIPNVCTSYATSAGIPNFINK 448


>SB_8627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 80  VALISCPTLFVPLKRQIGDRGTVTLLEYDRRFE-VHGPDYIFYDYNNPKEVPPD 132
           + L   P+LFVPLK +IG       + Y    E + GP+ I      PK  P D
Sbjct: 129 IGLNQRPSLFVPLKFKIGTNSQPVGVRYCTGPEMIPGPETIPGTETIPKSSPTD 182


>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
          Length = 1705

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 127 KEVPPDVHHSYDLVVADPPFLSEECITKTSETIKLLSKDKIILCTGTIMKDIVKEL 182
           KEV   VH S D++ +   F S E   +   + K   K+K +    T+ K + KE+
Sbjct: 817 KEVDTTVHESRDVLTSSIDFTSAETGVEIEPSKKRKKKNKGLKDDQTVAKIVEKEV 872


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,402,624
Number of Sequences: 59808
Number of extensions: 310615
Number of successful extensions: 740
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 20
length of query: 215
length of database: 16,821,457
effective HSP length: 79
effective length of query: 136
effective length of database: 12,096,625
effective search space: 1645141000
effective search space used: 1645141000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)