GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000758-TA|BGIBMGA000758-PA|IPR009050|Globin-like,
IPR002052|N-6 Adenine-specific DNA methylase
         (215 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73428-4|CAH60777.1|  218|Caenorhabditis elegans Hypothetical pr...   163   7e-41
Z81525-3|CAB04258.1|  467|Caenorhabditis elegans Hypothetical pr...    36   0.017
U93847-1|AAB58269.1|  760|Caenorhabditis elegans elongation fact...    31   0.48 
U93846-1|AAB58268.1|  768|Caenorhabditis elegans elongation fact...    31   0.48 
U10414-7|AAN63383.1|  768|Caenorhabditis elegans Elongation fact...    31   0.48 
U10414-6|AAN63384.1|  760|Caenorhabditis elegans Elongation fact...    31   0.48 
AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical...    31   0.48 
U97193-4|AAB52439.1|  691|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    29   1.9  
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z66522-4|CAC70090.1|  349|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U88165-9|AAK21394.1|  280|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z73428-4|CAH60777.1|  218|Caenorhabditis elegans Hypothetical
           protein M142.8 protein.
          Length = 218

 Score =  163 bits (397), Expect = 7e-41
 Identities = 88/219 (40%), Positives = 137/219 (62%), Gaps = 18/219 (8%)

Query: 1   MEADEDVPTLSAETFAALQEFYAEQSKRQEILVKLEADKKLTENILFDENWQLSQFWYDE 60
           M   +D+P LSA+T AAL  F AEQ   QE + +L++   + E I  DE+WQLSQFWYD+
Sbjct: 1   MSDTDDIPQLSADTLAALSMFQAEQ---QEKIEQLQSG--IIEKI--DEDWQLSQFWYDD 53

Query: 61  KTVHSLV-KVIDKVLDDR----GKVALISCPTL---FVPLKRQIGDRGTVTLLEYDRRFE 112
           +T   LV + +   L+       ++  +S PTL   F   +     +  +TL E+D RF 
Sbjct: 54  ETSRKLVAEGVAAALEGSEARPARIGCVSSPTLVKFFHETEEYKTGQIQLTLFEFDDRFG 113

Query: 113 VHGP-DYIFYDYNNPKEVPPDVHHSYDLVVADPPFLSEECITKTSETIKLLSKD--KIIL 169
           +  P +++ YDY +P ++P ++   +D+++ADPPFL+ EC+ KT+ +I+LL K   K++L
Sbjct: 114 LKFPTEFVHYDYKHPTDLPAELLAKFDVIIADPPFLAAECLIKTAHSIRLLGKSDVKVLL 173

Query: 170 CTGTIMKDIVKELLDLKLCEFQPKHRNNLANEFSCYANF 208
           CTG IM+D    L+ +    F+P+H NNLAN+FSC+AN+
Sbjct: 174 CTGAIMEDYASRLMAMHRTSFEPRHANNLANDFSCFANY 212


>Z81525-3|CAB04258.1|  467|Caenorhabditis elegans Hypothetical
           protein F33A8.4 protein.
          Length = 467

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 15/119 (12%)

Query: 54  SQFWYDEKTVHSLVKVIDKVLDDRGKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEV 113
           SQF++  +T+  + K ++K   D   +  I  P +F  + R +     V LL+YD+RF  
Sbjct: 212 SQFFFSTETLDVITKAVEKSKVDG--ILCIGAPRIFENI-RALHPEKNVFLLDYDKRFAK 268

Query: 114 HGP--DYIFY----DYNNPKEVPPDVHHSYD-----LVVADPPF-LSEECITKTSETIK 160
             P   Y  Y    D+   K   P +   +D     L++ DPPF +  E + K+ E +K
Sbjct: 269 FFPSKQYAQYSMLVDHFFDKIAEPKLMEFFDKSKSILMITDPPFGVFMEPLLKSIEKMK 327


>U93847-1|AAB58269.1|  760|Caenorhabditis elegans elongation
           factor-2 kinase EFK-1B isoform protein.
          Length = 760

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 1   MEADEDVPTLSAETFAALQEFYAEQSKRQEILVKLEADKKLTENILFDENWQLSQFWYDE 60
           +E DEDVP ++   F+ L + + + S+  E+   +E D +  E +   EN       YD+
Sbjct: 510 LENDEDVPQVTGHQFSVLGQIHIDLSRYHELGRFVEVDSEHKEMLEGSENDARVPIKYDK 569

Query: 61  KT 62
           ++
Sbjct: 570 QS 571


>U93846-1|AAB58268.1|  768|Caenorhabditis elegans elongation
           factor-2 kinase EFK-1A isoform protein.
          Length = 768

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 1   MEADEDVPTLSAETFAALQEFYAEQSKRQEILVKLEADKKLTENILFDENWQLSQFWYDE 60
           +E DEDVP ++   F+ L + + + S+  E+   +E D +  E +   EN       YD+
Sbjct: 510 LENDEDVPQVTGHQFSVLGQIHIDLSRYHELGRFVEVDSEHKEMLEGSENDARVPIKYDK 569

Query: 61  KT 62
           ++
Sbjct: 570 QS 571


>U10414-7|AAN63383.1|  768|Caenorhabditis elegans Elongation factor
           kinase protein1, isoform a protein.
          Length = 768

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 1   MEADEDVPTLSAETFAALQEFYAEQSKRQEILVKLEADKKLTENILFDENWQLSQFWYDE 60
           +E DEDVP ++   F+ L + + + S+  E+   +E D +  E +   EN       YD+
Sbjct: 510 LENDEDVPQVTGHQFSVLGQIHIDLSRYHELGRFVEVDSEHKEMLEGSENDARVPIKYDK 569

Query: 61  KT 62
           ++
Sbjct: 570 QS 571


>U10414-6|AAN63384.1|  760|Caenorhabditis elegans Elongation factor
           kinase protein1, isoform b protein.
          Length = 760

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 1   MEADEDVPTLSAETFAALQEFYAEQSKRQEILVKLEADKKLTENILFDENWQLSQFWYDE 60
           +E DEDVP ++   F+ L + + + S+  E+   +E D +  E +   EN       YD+
Sbjct: 510 LENDEDVPQVTGHQFSVLGQIHIDLSRYHELGRFVEVDSEHKEMLEGSENDARVPIKYDK 569

Query: 61  KT 62
           ++
Sbjct: 570 QS 571


>AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.28 protein.
          Length = 691

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 146 FLSEECITKTSETIKLLSKDKIILCTGTIMKDIVKELLDLKLC 188
           F S ECI K  + IK  +  +   CTG   + +  E++ +K C
Sbjct: 611 FASSECIKKEHKLIKHTADKRFFKCTGCKKRTVCFEMMPVKHC 653


>U97193-4|AAB52439.1|  691|Caenorhabditis elegans Hypothetical
           protein C06A5.6 protein.
          Length = 691

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 11/89 (12%)

Query: 48  DENWQLSQFWYDEKTVHSLVKVIDKVLDDRGKVALISCP-------TLFVPLKRQIGDRG 100
           D N Q+++F+ D+    S V  +    DDRG   +  CP       T+ + +K  IG R 
Sbjct: 229 DLNGQINEFYKDKVKRKSGVHALIYKKDDRGDKLIFDCPSILGTSMTMALEIKDVIGHRS 288

Query: 101 TV----TLLEYDRRFEVHGPDYIFYDYNN 125
                 T L YD       P     D+N+
Sbjct: 289 VAENDPTALSYDELVSKQLPTVDIDDHNS 317


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
           protein R155.2 protein.
          Length = 1308

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 141 VADPPFLSEECITKTSETIKLLSKDK---IILCTGTIMKDIVKELLDLK 186
           V D  FL  E + K +ET KL+ K+K     L  GTI+KD+   + + K
Sbjct: 519 VTDAKFL--ESVQKINETYKLIFKEKGSMTTLSKGTILKDVTTVVNNFK 565


>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
           protein R05D3.1 protein.
          Length = 1053

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 25  QSKRQEILVKLEADKKLTEN-ILFDENWQLSQFWYDEKTVHSLVKVIDKVLDDRGKVALI 83
           Q    ++L   +    LTEN +LFD N +L +F    +      +V   + + R K+   
Sbjct: 875 QKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGNISEIAAEFFEVRRDLYEKRLKIQKE 934

Query: 84  SCPTLFVPLKRQI 96
            C    + ++ Q+
Sbjct: 935 ECEAKLIYVENQL 947


>Z66522-4|CAC70090.1|  349|Caenorhabditis elegans Hypothetical
           protein F14E5.6 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 119 IFYDYNNPKEVPPDVHHSYDLVVADPPFLSEECITKTSE 157
           +FYDY+ P ++ P  H +        PF+S    TKT E
Sbjct: 39  LFYDYSEPSDINPQAHLANS--TTKDPFISS---TKTHE 72


>U88165-9|AAK21394.1|  280|Caenorhabditis elegans Hypothetical
           protein F54C1.6 protein.
          Length = 280

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 106 EYDRRFEVHGPDYIFYDYNNPKEVPPDVH--H-SYDLVVADPPFLSEECITKTSETIK 160
           E +  F   GP         P  VPP+VH  H ++D+   D P  S E I+ T++ ++
Sbjct: 203 EVNSEFSTEGPHASVNSSQIPSPVPPEVHTPHPTHDVKSKDEP--SAEVISNTADILE 258


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,714,388
Number of Sequences: 27539
Number of extensions: 250355
Number of successful extensions: 711
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 12
length of query: 215
length of database: 12,573,161
effective HSP length: 78
effective length of query: 137
effective length of database: 10,425,119
effective search space: 1428241303
effective search space used: 1428241303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)