GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000758-TA|BGIBMGA000758-PA|IPR009050|Globin-like,
IPR002052|N-6 Adenine-specific DNA methylase
         (215 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.72 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 22  YAEQSKRQEILVKLEADKKLTENILFDE 49
           YAE++KR EI++  EA   L   + + E
Sbjct: 285 YAEENKRDEIVLLTEAYSSLENTLKYYE 312


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 6/30 (20%)

Query: 102 VTLLEYDRRFEVHGP------DYIFYDYNN 125
           +  + +DR F + G       DY FYDY+N
Sbjct: 7   IKYINFDRFFFIEGMTNVLDFDYYFYDYSN 36


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 116 PDYIFYDYNNPKEVPPDVHHSYDLVVADPPFLS 148
           PDYIF + ++   +PP+   S  L   DP FL+
Sbjct: 50  PDYIFEEGDDYVTLPPEFFDS--LWQPDPYFLN 80


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 14/31 (45%), Positives = 14/31 (45%)

Query: 129 VPPDVHHSYDLVVADPPFLSEECITKTSETI 159
           VP  V HS   V  D    S ECI   S TI
Sbjct: 117 VPDIVMHSVTSVGIDLEMPSVECIVFNSGTI 147


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 70  IDKVLDDRGKVALISCP 86
           IDK  ++ G  A+++CP
Sbjct: 551 IDKKFNEFGTTAVVNCP 567


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 70  IDKVLDDRGKVALISCP 86
           IDK  ++ G  A+++CP
Sbjct: 551 IDKKFNEFGTTAVVNCP 567


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 67  VKVIDKVLDDRGKVALISCPTLFVPLKRQIGDRGTVTL 104
           ++ +DK     G+   ++CP    P++  + +R T  L
Sbjct: 494 IRHMDKKAIVAGETLRVTCPVAGYPIESIVWERDTRVL 531


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 108 DRRFEVHGPDYIFYDYNNPKE 128
           D  +++  P ++ Y+Y  PKE
Sbjct: 361 DENWDLIAPYFLDYNYTIPKE 381


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 108 DRRFEVHGPDYIFYDYNNPKE 128
           D  +++  P ++ Y+Y  PKE
Sbjct: 361 DENWDLIAPYFLDYNYTIPKE 381


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,522
Number of Sequences: 429
Number of extensions: 3085
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 9
length of query: 215
length of database: 140,377
effective HSP length: 55
effective length of query: 160
effective length of database: 116,782
effective search space: 18685120
effective search space used: 18685120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)